Wall clock time and date at job start Tue Mar 31 2020 11:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47350 * 2 1 4 4 C 1.46498 * 119.99907 * 274.94793 * 3 2 1 5 5 C 1.52993 * 109.47404 * 269.99717 * 4 3 2 6 6 C 1.52999 * 109.47286 * 180.02562 * 5 4 3 7 7 F 1.39898 * 109.47282 * 60.00384 * 6 5 4 8 8 F 1.39905 * 109.46977 * 179.97438 * 6 5 4 9 9 F 1.39900 * 109.47100 * 300.00245 * 6 5 4 10 10 C 1.34775 * 119.99520 * 94.94678 * 3 2 1 11 11 O 1.21614 * 119.99835 * 185.84924 * 10 3 2 12 12 C 1.47433 * 120.00460 * 5.85625 * 10 3 2 13 13 C 1.39222 * 120.28202 * 55.09110 * 12 10 3 14 14 C 1.38225 * 120.09156 * 180.28328 * 13 12 10 15 15 C 1.38823 * 120.67482 * 359.69758 * 14 13 12 16 16 C 1.37593 * 120.57166 * 359.97438 * 15 14 13 17 17 C 1.40704 * 119.88199 * 0.02701 * 16 15 14 18 18 C 1.40892 * 120.33288 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00440 * 214.97858 * 18 17 16 20 20 C 1.40280 * 119.99835 * 34.97399 * 18 17 16 21 21 N 1.30625 * 119.99951 * 185.75123 * 20 18 17 22 22 Si 1.86803 * 119.99747 * 5.74987 * 20 18 17 23 23 H 1.48497 * 109.47073 * 265.24158 * 22 20 18 24 24 H 1.48503 * 109.47130 * 25.24182 * 22 20 18 25 25 H 1.48496 * 109.46796 * 145.24448 * 22 20 18 26 26 H 1.08994 * 109.47544 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47208 * 300.00071 * 1 2 3 28 28 H 1.09002 * 109.47134 * 59.99616 * 1 2 3 29 29 H 1.09001 * 109.47402 * 240.00425 * 2 1 3 30 30 H 1.09002 * 109.47134 * 120.00384 * 2 1 3 31 31 H 1.08998 * 109.47188 * 30.00520 * 4 3 2 32 32 H 1.09005 * 109.46420 * 149.99893 * 4 3 2 33 33 H 1.09006 * 109.47369 * 300.00759 * 5 4 3 34 34 H 1.09003 * 109.47136 * 60.00101 * 5 4 3 35 35 H 1.08003 * 119.95669 * 0.02562 * 13 12 10 36 36 H 1.07996 * 119.66395 * 179.72007 * 14 13 12 37 37 H 1.07998 * 119.71552 * 180.02562 * 15 14 13 38 38 H 1.07997 * 120.06327 * 180.02562 * 16 15 14 39 39 H 0.97001 * 119.99516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1594 2.1083 -1.2640 5 6 3.5633 1.8824 -1.8284 6 6 3.7108 2.6423 -3.1482 7 9 3.5127 4.0089 -2.9242 8 9 4.9948 2.4361 -3.6640 9 9 2.7599 2.1770 -4.0629 10 6 2.3379 1.9829 1.1629 11 8 2.6411 3.1606 1.1749 12 6 2.3199 1.2135 2.4204 13 6 3.0644 0.0429 2.5378 14 6 3.0401 -0.6785 3.7166 15 6 2.2825 -0.2457 4.7964 16 6 1.5417 0.9108 4.7128 17 6 1.5491 1.6636 3.5241 18 6 0.7937 2.8490 3.4279 19 1 0.3304 3.1196 2.4906 20 6 0.6432 3.6778 4.5496 21 7 -0.1474 4.7161 4.4932 22 14 1.5733 3.2965 6.1241 23 1 0.7069 2.5012 7.0307 24 1 2.7966 2.5191 5.8005 25 1 1.9560 4.5660 6.7927 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4185 1.7455 -1.9764 32 1 2.0048 3.1732 -1.0897 33 1 4.3042 2.2452 -1.1159 34 1 3.7179 0.8176 -2.0026 35 1 3.6585 -0.3042 1.7054 36 1 3.6166 -1.5880 3.7987 37 1 2.2751 -0.8212 5.7102 38 1 0.9556 1.2401 5.5579 39 1 -0.2517 5.2889 5.2690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601023679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:32 Heat of formation + Delta-G solvation = -190.966205 kcal Electronic energy + Delta-G solvation = -26947.203207 eV Core-core repulsion = 22631.624214 eV Total energy + Delta-G solvation = -4315.578992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.12659 -48.62805 -48.60312 -41.19511 -39.02080 -37.17089 -35.54369 -34.14052 -32.40549 -31.77040 -30.87366 -27.56566 -26.60155 -24.68115 -23.87324 -23.30975 -22.50173 -20.27601 -19.57340 -19.39847 -19.24968 -18.49916 -18.28365 -17.39598 -17.00743 -16.22665 -16.00170 -15.77509 -15.55201 -15.53074 -15.05676 -15.04352 -14.84220 -14.77266 -14.69359 -14.67109 -14.50932 -14.23625 -13.93972 -13.65380 -13.43797 -13.23952 -13.03396 -12.79842 -12.71326 -12.60730 -12.30460 -12.15793 -11.92049 -11.74971 -11.57285 -11.10775 -10.60225 -9.78773 -9.46498 -9.37354 -8.87798 -6.54493 0.49160 0.82793 1.22891 1.36787 1.45846 1.64588 1.88717 2.08826 2.19280 2.63673 2.90812 3.02280 3.05899 3.43496 3.73110 3.88220 4.08570 4.16707 4.25916 4.29227 4.40923 4.42449 4.60184 4.64472 4.71982 4.80555 4.84137 4.89042 4.99865 5.04677 5.27327 5.38118 5.43982 5.66028 5.71905 5.80481 5.93134 6.15597 6.34247 6.46246 6.69234 6.74890 7.38525 8.21013 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.004238 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.695073 B = 6605.949256 C = 7261.657103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.610 5.610 4 C 0.112 3.888 5 C -0.172 4.172 6 C 0.462 3.538 7 F -0.195 7.195 8 F -0.185 7.185 9 F -0.181 7.181 10 C 0.576 3.424 11 O -0.580 6.580 12 C -0.243 4.243 13 C -0.048 4.048 14 C -0.217 4.217 15 C -0.068 4.068 16 C -0.239 4.239 17 C 0.101 3.899 18 C -0.457 4.457 19 H 0.038 0.962 20 C 0.036 3.964 21 N -0.859 5.859 22 Si 0.968 3.032 23 H -0.247 1.247 24 H -0.240 1.240 25 H -0.287 1.287 26 H 0.091 0.909 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.276 -13.467 -10.177 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.342 5.342 4 C -0.011 4.011 5 C -0.211 4.211 6 C 0.407 3.593 7 F -0.177 7.177 8 F -0.166 7.166 9 F -0.163 7.163 10 C 0.368 3.632 11 O -0.460 6.460 12 C -0.247 4.247 13 C -0.066 4.066 14 C -0.235 4.235 15 C -0.086 4.086 16 C -0.258 4.258 17 C 0.097 3.903 18 C -0.487 4.487 19 H 0.056 0.944 20 C -0.177 4.177 21 N -0.486 5.486 22 Si 0.791 3.209 23 H -0.172 1.172 24 H -0.164 1.164 25 H -0.215 1.215 26 H 0.110 0.890 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.116 0.884 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.268 -12.592 -10.151 17.346 hybrid contribution -0.317 1.200 0.347 1.288 sum 5.951 -11.392 -9.804 16.165 Atomic orbital electron populations 1.22134 0.96376 1.03068 1.00864 1.22040 0.94434 0.80637 1.05494 1.47923 1.65926 1.15797 1.04579 1.21280 0.95492 0.98260 0.86106 1.23222 1.01488 1.04425 0.91969 1.20484 0.73452 0.77763 0.87595 1.93195 1.94823 1.34899 1.94793 1.93184 1.39906 1.94712 1.88836 1.93181 1.64751 1.88298 1.70021 1.18672 0.74432 0.85790 0.84333 1.90706 1.50003 1.18050 1.87203 1.19689 1.08425 1.01392 0.95224 1.21067 0.95835 0.91360 0.98370 1.20927 1.06000 1.03093 0.93526 1.21190 0.93954 0.94396 0.99049 1.21098 1.07456 0.98900 0.98338 1.17657 0.89206 0.91641 0.91777 1.19283 1.27536 1.05031 0.96824 0.94386 1.26990 0.93883 0.93633 1.03186 1.69597 1.31435 1.14142 1.33392 0.85495 0.81144 0.77653 0.76605 1.17218 1.16382 1.21486 0.89025 0.96033 0.92291 0.86643 0.88748 0.86920 0.92154 0.88189 0.83670 0.84378 0.83642 0.84636 0.88442 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 10.24 71.98 0.74 -3.42 16 2 C 0.10 2.23 5.95 86.38 0.51 2.74 16 3 N -0.61 -19.43 2.47 -825.68 -2.04 -21.47 16 4 C 0.11 3.06 5.23 86.38 0.45 3.51 16 5 C -0.17 -3.64 5.58 30.59 0.17 -3.47 16 6 C 0.46 10.29 3.16 71.98 0.23 10.51 16 7 F -0.20 -5.46 16.80 44.97 0.76 -4.71 16 8 F -0.18 -4.09 17.32 44.97 0.78 -3.31 16 9 F -0.18 -3.80 16.80 44.97 0.76 -3.04 16 10 C 0.58 25.36 6.33 86.67 0.55 25.91 16 11 O -0.58 -31.38 15.88 -4.08 -0.06 -31.44 16 12 C -0.24 -10.61 4.94 -19.70 -0.10 -10.71 16 13 C -0.05 -1.60 7.47 22.50 0.17 -1.44 16 14 C -0.22 -6.67 10.03 22.41 0.22 -6.45 16 15 C -0.07 -2.36 10.01 22.26 0.22 -2.14 16 16 C -0.24 -10.50 6.71 22.72 0.15 -10.35 16 17 C 0.10 5.05 5.13 -21.11 -0.11 4.95 16 18 C -0.46 -26.77 8.44 23.42 0.20 -26.58 16 19 H 0.04 2.51 7.62 -2.91 -0.02 2.49 16 20 C 0.04 2.03 5.51 85.37 0.47 2.50 16 21 N -0.86 -50.27 13.92 21.88 0.30 -49.97 16 22 Si 0.97 43.86 24.43 68.60 1.68 45.54 16 23 H -0.25 -10.11 6.91 99.48 0.69 -9.42 16 24 H -0.24 -10.86 6.20 99.48 0.62 -10.24 16 25 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.12 1.64 8.11 -2.39 -0.02 1.62 16 30 H 0.09 2.31 4.45 -2.39 -0.01 2.30 16 31 H 0.11 2.38 7.73 -2.39 -0.02 2.37 16 32 H 0.06 2.11 7.01 -2.38 -0.02 2.09 16 33 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.15 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.14 3.56 7.59 -2.91 -0.02 3.53 16 36 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.10 4.30 4.54 -2.91 -0.01 4.28 16 39 H 0.29 15.38 8.29 -92.71 -0.77 14.61 16 Total: -1.00 -73.01 334.74 7.02 -65.99 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.98 Total: 16.84 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 3.88 Total: -14.43 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.74 Total: -71.44 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.06 Total: -31.44 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 2.29 Total: -11.06 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.68 Total: 45.54 kcal Total: -73.01 7.02 -65.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.975 kcal (2) G-P(sol) polarization free energy of solvation -73.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds