Wall clock time and date at job start Tue Mar 31 2020 10:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09009 * 109.47087 * 305.00139 * 3 2 1 5 5 C 1.52999 * 109.47249 * 185.00357 * 3 2 1 6 6 C 1.53005 * 109.47085 * 175.00041 * 5 3 2 7 7 F 1.39893 * 109.46924 * 59.99770 * 6 5 3 8 8 F 1.39901 * 109.46936 * 180.02562 * 6 5 3 9 9 F 1.39900 * 109.46773 * 299.99540 * 6 5 3 10 10 N 1.46494 * 109.47109 * 64.99842 * 3 2 1 11 11 C 1.34776 * 120.00009 * 274.99992 * 10 3 2 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 3 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 3 14 14 C 1.39234 * 120.28378 * 356.71545 * 13 11 10 15 15 C 1.38221 * 120.09220 * 180.27748 * 14 13 11 16 16 C 1.38825 * 120.67612 * 359.70513 * 15 14 13 17 17 C 1.37605 * 120.56954 * 359.97438 * 16 15 14 18 18 C 1.40702 * 119.88214 * 0.02562 * 17 16 15 19 19 C 1.40890 * 120.32812 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00037 * 145.80294 * 19 18 17 21 21 C 1.40276 * 119.99891 * 325.80526 * 19 18 17 22 22 N 1.30620 * 120.00008 * 340.76169 * 21 19 18 23 23 Si 1.86798 * 119.99820 * 160.75905 * 21 19 18 24 24 H 1.48505 * 109.46990 * 270.00136 * 23 21 19 25 25 H 1.48495 * 109.47512 * 29.99815 * 23 21 19 26 26 H 1.48496 * 109.47105 * 150.00121 * 23 21 19 27 27 H 1.08999 * 109.47159 * 60.00136 * 1 2 3 28 28 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47216 * 299.99680 * 1 2 3 30 30 H 1.09003 * 109.46845 * 239.99815 * 2 1 3 31 31 H 1.08996 * 109.47317 * 120.00360 * 2 1 3 32 32 H 1.08998 * 109.46854 * 294.99713 * 5 3 2 33 33 H 1.08998 * 109.47345 * 54.99583 * 5 3 2 34 34 H 0.96994 * 119.99831 * 95.00064 * 10 3 2 35 35 H 1.07994 * 119.95345 * 0.02562 * 14 13 11 36 36 H 1.07995 * 119.65788 * 179.72345 * 15 14 13 37 37 H 1.08000 * 119.71774 * 180.02562 * 16 15 14 38 38 H 1.08000 * 120.05821 * 180.02562 * 17 16 15 39 39 H 0.97008 * 120.00066 * 354.83913 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5648 1.4443 -0.1258 6 6 4.0644 2.8851 -0.2512 7 9 3.6894 3.6092 0.8854 8 9 5.4587 2.8867 -0.3668 9 9 3.5021 3.4763 -1.3876 10 7 1.6524 2.0974 1.2517 11 6 0.4351 2.6643 1.3669 12 8 -0.3417 2.6318 0.4318 13 6 0.0453 3.3240 2.6265 14 6 0.9027 3.3056 3.7233 15 6 0.5308 3.9204 4.9041 16 6 -0.6932 4.5666 5.0112 17 6 -1.5590 4.6073 3.9425 18 6 -1.2044 3.9893 2.7292 19 6 -2.0840 4.0247 1.6291 20 1 -1.6907 4.0809 0.6248 21 6 -3.4705 3.9870 1.8382 22 7 -3.9483 3.5497 2.9725 23 14 -4.6337 4.5624 0.4946 24 1 -4.8989 6.0144 0.6577 25 1 -4.0155 4.3184 -0.8334 26 1 -5.9114 3.8119 0.5911 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.0029 0.9836 0.7595 33 1 3.8570 0.8800 -1.0114 34 1 2.2719 2.1231 1.9977 35 1 1.8580 2.8068 3.6526 36 1 1.1995 3.8980 5.7519 37 1 -0.9679 5.0422 5.9411 38 1 -2.5089 5.1127 4.0348 39 1 -3.3497 3.1813 3.6412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601444612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:52 Heat of formation + Delta-G solvation = -187.130495 kcal Electronic energy + Delta-G solvation = -27414.365849 eV Core-core repulsion = 23098.953186 eV Total energy + Delta-G solvation = -4315.412664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.07275 -47.60898 -47.50006 -39.40872 -37.43822 -35.69437 -33.97681 -32.01461 -31.22059 -29.78329 -29.23179 -25.86526 -25.06978 -22.73974 -22.50880 -21.17061 -20.56553 -19.64600 -18.48016 -18.40498 -17.99707 -17.35817 -16.34443 -15.96686 -14.88007 -14.67845 -14.48359 -14.42866 -14.10556 -14.05482 -13.96522 -13.71500 -13.66927 -13.61503 -13.42327 -13.08113 -12.84646 -12.51968 -12.41416 -12.11504 -11.89164 -11.61036 -11.16729 -11.14019 -11.00925 -10.89452 -10.72651 -10.57866 -10.37452 -10.13725 -9.60907 -9.07644 -8.56097 -8.36553 -7.78383 -7.60117 -7.13806 -4.45803 2.24327 2.73771 2.74018 3.20207 3.31033 3.41577 3.64202 3.79885 3.91522 4.03688 4.06035 4.10262 4.63447 4.72422 4.93200 5.12320 5.22844 5.33104 5.48428 5.56463 5.80310 5.88922 5.99264 6.07638 6.17776 6.20710 6.42142 6.51455 6.72030 6.85661 6.98942 7.04339 7.28368 7.50000 7.60624 7.72731 7.89203 8.08768 8.21671 8.33613 8.73529 8.86678 9.34262 10.04715 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.004892 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.080027 B = 5721.838381 C = 6505.592563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.146 3.854 4 H 0.098 0.902 5 C -0.175 4.175 6 C 0.451 3.549 7 F -0.173 7.173 8 F -0.191 7.191 9 F -0.182 7.182 10 N -0.745 5.745 11 C 0.568 3.432 12 O -0.528 6.528 13 C -0.264 4.264 14 C -0.042 4.042 15 C -0.259 4.259 16 C -0.076 4.076 17 C -0.201 4.201 18 C 0.121 3.879 19 C -0.466 4.466 20 H 0.106 0.894 21 C 0.032 3.968 22 N -0.795 5.795 23 Si 1.071 2.929 24 H -0.275 1.275 25 H -0.273 1.273 26 H -0.277 1.277 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.392 0.608 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.408 -5.361 -4.505 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.040 3.960 4 H 0.116 0.884 5 C -0.214 4.214 6 C 0.397 3.603 7 F -0.155 7.155 8 F -0.172 7.172 9 F -0.163 7.163 10 N -0.401 5.401 11 C 0.363 3.637 12 O -0.406 6.406 13 C -0.269 4.269 14 C -0.061 4.061 15 C -0.279 4.279 16 C -0.095 4.095 17 C -0.220 4.220 18 C 0.117 3.883 19 C -0.492 4.492 20 H 0.124 0.876 21 C -0.190 4.190 22 N -0.418 5.418 23 Si 0.895 3.105 24 H -0.201 1.201 25 H -0.197 1.197 26 H -0.202 1.202 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.228 0.772 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.208 -5.117 -5.509 12.678 hybrid contribution 2.270 -0.060 0.994 2.479 sum 12.478 -5.178 -4.515 14.244 Atomic orbital electron populations 1.21796 0.93839 1.00267 1.04369 1.21889 0.98154 0.94838 1.01568 1.20809 0.89568 0.95137 0.90502 0.88387 1.23259 0.99305 0.91112 1.07690 1.20549 0.74861 0.90747 0.74144 1.93231 1.90926 1.80432 1.50882 1.93171 1.31056 1.97132 1.95888 1.93196 1.84903 1.86353 1.51864 1.46153 1.18276 1.60667 1.15025 1.18265 0.79929 0.77096 0.88413 1.90692 1.50149 1.59248 1.40535 1.19378 1.01146 1.12556 0.93831 1.20710 0.96069 0.96156 0.93151 1.20239 0.98891 1.11025 0.97726 1.20742 0.94162 0.97582 0.96974 1.21251 1.00573 1.05420 0.94771 1.17501 0.91041 0.87664 0.92114 1.21196 0.92384 1.38848 0.96813 0.87596 1.27233 0.98447 0.93087 1.00217 1.70360 1.41998 1.23544 1.05896 0.83538 0.75047 0.77260 0.74671 1.20106 1.19741 1.20200 0.92043 0.94016 0.91173 0.91665 0.91955 0.87010 0.86245 0.77241 0.89222 0.88968 0.88945 0.87592 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.51 37.16 0.32 -2.01 16 2 C -0.13 -1.54 5.61 -26.73 -0.15 -1.69 16 3 C 0.15 1.95 2.19 -67.94 -0.15 1.80 16 4 H 0.10 1.54 7.10 -51.92 -0.37 1.18 16 5 C -0.17 -1.67 4.88 -26.73 -0.13 -1.80 16 6 C 0.45 5.53 3.16 37.16 0.12 5.65 16 7 F -0.17 -2.54 15.18 2.25 0.03 -2.50 16 8 F -0.19 -2.23 17.32 2.25 0.04 -2.19 16 9 F -0.18 -2.57 16.71 2.25 0.04 -2.53 16 10 N -0.75 -12.24 3.71 -54.88 -0.20 -12.44 16 11 C 0.57 12.39 6.30 -12.52 -0.08 12.32 16 12 O -0.53 -12.91 10.69 5.27 0.06 -12.85 16 13 C -0.26 -6.27 5.92 -104.36 -0.62 -6.88 16 14 C -0.04 -0.88 9.53 -39.22 -0.37 -1.25 16 15 C -0.26 -5.42 10.03 -39.37 -0.39 -5.81 16 16 C -0.08 -1.67 10.01 -39.60 -0.40 -2.07 16 17 C -0.20 -4.98 7.87 -38.88 -0.31 -5.28 16 18 C 0.12 3.18 5.17 -106.54 -0.55 2.62 16 19 C -0.47 -12.55 7.65 -37.81 -0.29 -12.84 16 20 H 0.11 2.98 5.93 -52.49 -0.31 2.67 16 21 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 22 N -0.79 -21.08 12.57 55.56 0.70 -20.38 16 23 Si 1.07 22.47 29.98 -169.99 -5.10 17.37 16 24 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 27 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 28 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.07 1.39 5.64 -51.93 -0.29 1.09 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.39 5.75 5.90 -40.82 -0.24 5.50 16 35 H 0.09 1.55 6.41 -52.49 -0.34 1.22 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.11 2.69 6.94 -52.49 -0.36 2.32 16 39 H 0.30 8.09 6.55 -40.82 -0.27 7.83 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -29.24 328.49 -6.92 -36.16 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -4.34 Total: 10.92 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -3.09 Total: -16.52 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.50 Total: -32.82 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.06 Total: -12.85 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.10 Total: 17.37 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.24 -6.92 -36.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601444612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.971 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds