Wall clock time and date at job start Tue Mar 31 2020 10:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09009 * 109.47087 * 305.00139 * 3 2 1 5 5 C 1.52999 * 109.47249 * 185.00357 * 3 2 1 6 6 C 1.53005 * 109.47085 * 175.00041 * 5 3 2 7 7 F 1.39893 * 109.46924 * 59.99770 * 6 5 3 8 8 F 1.39901 * 109.46936 * 180.02562 * 6 5 3 9 9 F 1.39900 * 109.46773 * 299.99540 * 6 5 3 10 10 N 1.46494 * 109.47109 * 64.99842 * 3 2 1 11 11 C 1.34776 * 120.00009 * 274.99992 * 10 3 2 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 3 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 3 14 14 C 1.39234 * 120.28378 * 356.71545 * 13 11 10 15 15 C 1.38221 * 120.09220 * 180.27748 * 14 13 11 16 16 C 1.38825 * 120.67612 * 359.70513 * 15 14 13 17 17 C 1.37605 * 120.56954 * 359.97438 * 16 15 14 18 18 C 1.40702 * 119.88214 * 0.02562 * 17 16 15 19 19 C 1.40890 * 120.32812 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00037 * 145.80294 * 19 18 17 21 21 C 1.40276 * 119.99891 * 325.80526 * 19 18 17 22 22 N 1.30620 * 120.00008 * 340.76169 * 21 19 18 23 23 Si 1.86798 * 119.99820 * 160.75905 * 21 19 18 24 24 H 1.48505 * 109.46990 * 270.00136 * 23 21 19 25 25 H 1.48495 * 109.47512 * 29.99815 * 23 21 19 26 26 H 1.48496 * 109.47105 * 150.00121 * 23 21 19 27 27 H 1.08999 * 109.47159 * 60.00136 * 1 2 3 28 28 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47216 * 299.99680 * 1 2 3 30 30 H 1.09003 * 109.46845 * 239.99815 * 2 1 3 31 31 H 1.08996 * 109.47317 * 120.00360 * 2 1 3 32 32 H 1.08998 * 109.46854 * 294.99713 * 5 3 2 33 33 H 1.08998 * 109.47345 * 54.99583 * 5 3 2 34 34 H 0.96994 * 119.99831 * 95.00064 * 10 3 2 35 35 H 1.07994 * 119.95345 * 0.02562 * 14 13 11 36 36 H 1.07995 * 119.65788 * 179.72345 * 15 14 13 37 37 H 1.08000 * 119.71774 * 180.02562 * 16 15 14 38 38 H 1.08000 * 120.05821 * 180.02562 * 17 16 15 39 39 H 0.97008 * 120.00066 * 354.83913 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5648 1.4443 -0.1258 6 6 4.0644 2.8851 -0.2512 7 9 3.6894 3.6092 0.8854 8 9 5.4587 2.8867 -0.3668 9 9 3.5021 3.4763 -1.3876 10 7 1.6524 2.0974 1.2517 11 6 0.4351 2.6643 1.3669 12 8 -0.3417 2.6318 0.4318 13 6 0.0453 3.3240 2.6265 14 6 0.9027 3.3056 3.7233 15 6 0.5308 3.9204 4.9041 16 6 -0.6932 4.5666 5.0112 17 6 -1.5590 4.6073 3.9425 18 6 -1.2044 3.9893 2.7292 19 6 -2.0840 4.0247 1.6291 20 1 -1.6907 4.0809 0.6248 21 6 -3.4705 3.9870 1.8382 22 7 -3.9483 3.5497 2.9725 23 14 -4.6337 4.5624 0.4946 24 1 -4.8989 6.0144 0.6577 25 1 -4.0155 4.3184 -0.8334 26 1 -5.9114 3.8119 0.5911 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.0029 0.9836 0.7595 33 1 3.8570 0.8800 -1.0114 34 1 2.2719 2.1231 1.9977 35 1 1.8580 2.8068 3.6526 36 1 1.1995 3.8980 5.7519 37 1 -0.9679 5.0422 5.9411 38 1 -2.5089 5.1127 4.0348 39 1 -3.3497 3.1813 3.6412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601444612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:52 Heat of formation + Delta-G solvation = -203.484984 kcal Electronic energy + Delta-G solvation = -27415.075033 eV Core-core repulsion = 23098.953186 eV Total energy + Delta-G solvation = -4316.121847 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.06577 -48.57876 -48.55196 -40.99586 -39.09182 -37.14132 -35.81624 -33.48717 -32.26222 -31.55801 -30.96948 -27.33567 -26.64136 -24.31704 -23.57784 -22.86149 -21.91209 -21.23187 -19.92507 -19.48310 -19.32577 -18.42531 -17.88937 -17.27048 -16.52584 -16.29802 -15.85395 -15.69550 -15.51070 -15.44671 -15.31087 -14.97545 -14.76187 -14.72492 -14.68458 -14.42539 -14.16016 -13.94236 -13.87668 -13.66444 -13.26700 -12.90186 -12.78304 -12.63055 -12.50332 -12.33026 -12.09157 -12.05565 -11.91966 -11.72597 -11.42415 -10.94627 -10.26905 -9.87151 -9.58672 -9.46986 -9.06864 -6.43251 0.44239 0.91933 1.45550 1.61481 1.75732 1.82834 2.30207 2.32480 2.39388 2.77387 2.86168 2.97908 3.13095 3.59380 3.75702 4.05750 4.10479 4.24029 4.28603 4.35384 4.44277 4.52198 4.54584 4.74603 4.87108 4.90272 4.96020 5.02942 5.15858 5.23962 5.44968 5.53163 5.64829 5.69655 5.73853 5.91734 5.99282 6.22729 6.35754 6.71647 6.88740 6.95898 7.70346 8.06835 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.004892 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.080027 B = 5721.838381 C = 6505.592563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.140 3.860 4 H 0.069 0.931 5 C -0.158 4.158 6 C 0.444 3.556 7 F -0.191 7.191 8 F -0.185 7.185 9 F -0.198 7.198 10 N -0.726 5.726 11 C 0.565 3.435 12 O -0.563 6.563 13 C -0.280 4.280 14 C -0.042 4.042 15 C -0.246 4.246 16 C -0.074 4.074 17 C -0.227 4.227 18 C 0.096 3.904 19 C -0.507 4.507 20 H 0.081 0.919 21 C -0.001 4.001 22 N -0.820 5.820 23 Si 1.115 2.885 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.268 1.268 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.404 0.596 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.597 -6.871 -3.894 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C 0.035 3.965 4 H 0.087 0.913 5 C -0.196 4.196 6 C 0.390 3.610 7 F -0.173 7.173 8 F -0.167 7.167 9 F -0.180 7.180 10 N -0.382 5.382 11 C 0.358 3.642 12 O -0.443 6.443 13 C -0.285 4.285 14 C -0.061 4.061 15 C -0.265 4.265 16 C -0.093 4.093 17 C -0.246 4.246 18 C 0.092 3.908 19 C -0.535 4.535 20 H 0.099 0.901 21 C -0.217 4.217 22 N -0.444 5.444 23 Si 0.933 3.067 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.241 0.759 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.455 -6.638 -4.879 15.777 hybrid contribution 1.569 0.367 0.897 1.844 sum 15.024 -6.271 -3.982 16.760 Atomic orbital electron populations 1.21723 0.97170 1.00205 1.01021 1.21855 0.94897 0.94233 1.04467 1.20991 0.92505 0.95248 0.87771 0.91295 1.23296 0.95607 0.89553 1.11183 1.21041 0.75087 0.91760 0.73087 1.93192 1.91146 1.81163 1.51801 1.93182 1.30563 1.97134 1.95788 1.93171 1.85226 1.86864 1.52721 1.45909 1.16378 1.59246 1.16644 1.18164 0.81289 0.77311 0.87456 1.90681 1.51742 1.60407 1.41457 1.19883 1.00834 1.11908 0.95890 1.21145 0.97169 0.95709 0.92075 1.20792 0.98465 1.08454 0.98798 1.21134 0.94077 0.96936 0.97126 1.21197 1.00910 1.06760 0.95763 1.17900 0.92292 0.88009 0.92632 1.21071 0.93467 1.42965 0.96004 0.90100 1.28372 0.99636 0.92210 1.01450 1.70466 1.41148 1.26154 1.06630 0.83010 0.73572 0.77908 0.72176 1.18260 1.19950 1.19233 0.94437 0.92343 0.95549 0.87826 0.89794 0.83657 0.82468 0.75861 0.84946 0.84811 0.86026 0.89482 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.51 71.98 0.61 -3.97 16 2 C -0.12 -2.48 5.61 30.59 0.17 -2.31 16 3 C 0.14 3.43 2.19 44.99 0.10 3.52 16 4 H 0.07 2.15 7.10 -2.38 -0.02 2.14 16 5 C -0.16 -2.32 4.88 30.60 0.15 -2.17 16 6 C 0.44 9.71 3.16 71.98 0.23 9.94 16 7 F -0.19 -5.21 15.18 44.97 0.68 -4.52 16 8 F -0.19 -3.74 17.32 44.97 0.78 -2.96 16 9 F -0.20 -5.39 16.71 44.97 0.75 -4.64 16 10 N -0.73 -22.74 3.71 -445.79 -1.65 -24.39 16 11 C 0.56 25.13 6.30 86.67 0.55 25.68 16 12 O -0.56 -29.11 10.69 -4.06 -0.04 -29.15 16 13 C -0.28 -13.45 5.92 -19.70 -0.12 -13.57 16 14 C -0.04 -1.67 9.53 22.51 0.21 -1.45 16 15 C -0.25 -9.46 10.03 22.41 0.22 -9.23 16 16 C -0.07 -3.18 10.01 22.26 0.22 -2.95 16 17 C -0.23 -11.62 7.87 22.72 0.18 -11.45 16 18 C 0.10 5.24 5.17 -21.11 -0.11 5.13 16 19 C -0.51 -29.31 7.65 23.42 0.18 -29.13 16 20 H 0.08 4.96 5.93 -2.91 -0.02 4.94 16 21 C 0.00 -0.08 5.04 85.37 0.43 0.35 16 22 N -0.82 -46.12 12.57 21.88 0.28 -45.85 16 23 Si 1.12 47.83 29.98 68.60 2.06 49.88 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 27 H 0.04 1.33 7.84 -2.39 -0.02 1.31 16 28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.03 1.05 5.64 -2.39 -0.01 1.04 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.40 10.54 5.90 -92.71 -0.55 9.99 16 35 H 0.13 4.00 6.41 -2.91 -0.02 3.98 16 36 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 37 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.09 4.69 6.94 -2.91 -0.02 4.67 16 39 H 0.28 16.38 6.55 -92.70 -0.61 15.77 16 Total: -1.00 -71.20 328.49 6.59 -64.61 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.72 Total: 28.62 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 3.03 Total: -31.61 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.38 Total: -70.24 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.04 Total: -29.15 kcal Atomic # 9 Polarization: -14.33 SS G_CDS: 2.21 Total: -12.12 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.06 Total: 49.88 kcal Total: -71.20 6.59 -64.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601444612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.879 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds