Wall clock time and date at job start Tue Mar 31 2020 10:39:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52997 * 109.47134 * 2 1
4 4 H 1.09009 * 109.47087 * 305.00139 * 3 2 1
5 5 C 1.52999 * 109.47249 * 185.00357 * 3 2 1
6 6 C 1.53005 * 109.47085 * 175.00041 * 5 3 2
7 7 F 1.39893 * 109.46924 * 59.99770 * 6 5 3
8 8 F 1.39901 * 109.46936 * 180.02562 * 6 5 3
9 9 F 1.39900 * 109.46773 * 299.99540 * 6 5 3
10 10 N 1.46494 * 109.47109 * 64.99842 * 3 2 1
11 11 C 1.34776 * 120.00009 * 274.99992 * 10 3 2
12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 3
13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 3
14 14 C 1.39234 * 120.28378 * 356.71545 * 13 11 10
15 15 C 1.38221 * 120.09220 * 180.27748 * 14 13 11
16 16 C 1.38825 * 120.67612 * 359.70513 * 15 14 13
17 17 C 1.37605 * 120.56954 * 359.97438 * 16 15 14
18 18 C 1.40702 * 119.88214 * 0.02562 * 17 16 15
19 19 C 1.40890 * 120.32812 * 179.97438 * 18 17 16
20 20 H 1.07997 * 120.00037 * 145.80294 * 19 18 17
21 21 C 1.40276 * 119.99891 * 325.80526 * 19 18 17
22 22 N 1.30620 * 120.00008 * 340.76169 * 21 19 18
23 23 Si 1.86798 * 119.99820 * 160.75905 * 21 19 18
24 24 H 1.48505 * 109.46990 * 270.00136 * 23 21 19
25 25 H 1.48495 * 109.47512 * 29.99815 * 23 21 19
26 26 H 1.48496 * 109.47105 * 150.00121 * 23 21 19
27 27 H 1.08999 * 109.47159 * 60.00136 * 1 2 3
28 28 H 1.09008 * 109.47045 * 179.97438 * 1 2 3
29 29 H 1.08994 * 109.47216 * 299.99680 * 1 2 3
30 30 H 1.09003 * 109.46845 * 239.99815 * 2 1 3
31 31 H 1.08996 * 109.47317 * 120.00360 * 2 1 3
32 32 H 1.08998 * 109.46854 * 294.99713 * 5 3 2
33 33 H 1.08998 * 109.47345 * 54.99583 * 5 3 2
34 34 H 0.96994 * 119.99831 * 95.00064 * 10 3 2
35 35 H 1.07994 * 119.95345 * 0.02562 * 14 13 11
36 36 H 1.07995 * 119.65788 * 179.72345 * 15 14 13
37 37 H 1.08000 * 119.71774 * 180.02562 * 16 15 14
38 38 H 1.08000 * 120.05821 * 180.02562 * 17 16 15
39 39 H 0.97008 * 120.00066 * 354.83913 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 -0.8419
5 6 3.5648 1.4443 -0.1258
6 6 4.0644 2.8851 -0.2512
7 9 3.6894 3.6092 0.8854
8 9 5.4587 2.8867 -0.3668
9 9 3.5021 3.4763 -1.3876
10 7 1.6524 2.0974 1.2517
11 6 0.4351 2.6643 1.3669
12 8 -0.3417 2.6318 0.4318
13 6 0.0453 3.3240 2.6265
14 6 0.9027 3.3056 3.7233
15 6 0.5308 3.9204 4.9041
16 6 -0.6932 4.5666 5.0112
17 6 -1.5590 4.6073 3.9425
18 6 -1.2044 3.9893 2.7292
19 6 -2.0840 4.0247 1.6291
20 1 -1.6907 4.0809 0.6248
21 6 -3.4705 3.9870 1.8382
22 7 -3.9483 3.5497 2.9725
23 14 -4.6337 4.5624 0.4946
24 1 -4.8989 6.0144 0.6577
25 1 -4.0155 4.3184 -0.8334
26 1 -5.9114 3.8119 0.5911
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.8933 -0.5139 -0.8900
31 1 1.8934 -0.5139 0.8899
32 1 4.0029 0.9836 0.7595
33 1 3.8570 0.8800 -1.0114
34 1 2.2719 2.1231 1.9977
35 1 1.8580 2.8068 3.6526
36 1 1.1995 3.8980 5.7519
37 1 -0.9679 5.0422 5.9411
38 1 -2.5089 5.1127 4.0348
39 1 -3.3497 3.1813 3.6412
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601444612.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:52
Heat of formation + Delta-G solvation = -203.484984 kcal
Electronic energy + Delta-G solvation = -27415.075033 eV
Core-core repulsion = 23098.953186 eV
Total energy + Delta-G solvation = -4316.121847 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.119 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-51.06577 -48.57876 -48.55196 -40.99586 -39.09182 -37.14132 -35.81624 -33.48717
-32.26222 -31.55801 -30.96948 -27.33567 -26.64136 -24.31704 -23.57784 -22.86149
-21.91209 -21.23187 -19.92507 -19.48310 -19.32577 -18.42531 -17.88937 -17.27048
-16.52584 -16.29802 -15.85395 -15.69550 -15.51070 -15.44671 -15.31087 -14.97545
-14.76187 -14.72492 -14.68458 -14.42539 -14.16016 -13.94236 -13.87668 -13.66444
-13.26700 -12.90186 -12.78304 -12.63055 -12.50332 -12.33026 -12.09157 -12.05565
-11.91966 -11.72597 -11.42415 -10.94627 -10.26905 -9.87151 -9.58672 -9.46986
-9.06864 -6.43251 0.44239 0.91933 1.45550 1.61481 1.75732 1.82834
2.30207 2.32480 2.39388 2.77387 2.86168 2.97908 3.13095 3.59380
3.75702 4.05750 4.10479 4.24029 4.28603 4.35384 4.44277 4.52198
4.54584 4.74603 4.87108 4.90272 4.96020 5.02942 5.15858 5.23962
5.44968 5.53163 5.64829 5.69655 5.73853 5.91734 5.99282 6.22729
6.35754 6.71647 6.88740 6.95898 7.70346 8.06835
Molecular weight = 315.12amu
Principal moments of inertia in cm(-1)
A = 0.014216 B = 0.004892 C = 0.004303
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1969.080027 B = 5721.838381 C = 6505.592563
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.116 4.116
3 C 0.140 3.860
4 H 0.069 0.931
5 C -0.158 4.158
6 C 0.444 3.556
7 F -0.191 7.191
8 F -0.185 7.185
9 F -0.198 7.198
10 N -0.726 5.726
11 C 0.565 3.435
12 O -0.563 6.563
13 C -0.280 4.280
14 C -0.042 4.042
15 C -0.246 4.246
16 C -0.074 4.074
17 C -0.227 4.227
18 C 0.096 3.904
19 C -0.507 4.507
20 H 0.081 0.919
21 C -0.001 4.001
22 N -0.820 5.820
23 Si 1.115 2.885
24 H -0.258 1.258
25 H -0.275 1.275
26 H -0.268 1.268
27 H 0.036 0.964
28 H 0.058 0.942
29 H 0.025 0.975
30 H 0.103 0.897
31 H 0.083 0.917
32 H 0.145 0.855
33 H 0.157 0.843
34 H 0.404 0.596
35 H 0.133 0.867
36 H 0.134 0.866
37 H 0.122 0.878
38 H 0.087 0.913
39 H 0.282 0.718
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.597 -6.871 -3.894 17.483
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.155 4.155
3 C 0.035 3.965
4 H 0.087 0.913
5 C -0.196 4.196
6 C 0.390 3.610
7 F -0.173 7.173
8 F -0.167 7.167
9 F -0.180 7.180
10 N -0.382 5.382
11 C 0.358 3.642
12 O -0.443 6.443
13 C -0.285 4.285
14 C -0.061 4.061
15 C -0.265 4.265
16 C -0.093 4.093
17 C -0.246 4.246
18 C 0.092 3.908
19 C -0.535 4.535
20 H 0.099 0.901
21 C -0.217 4.217
22 N -0.444 5.444
23 Si 0.933 3.067
24 H -0.183 1.183
25 H -0.200 1.200
26 H -0.192 1.192
27 H 0.056 0.944
28 H 0.077 0.923
29 H 0.045 0.955
30 H 0.122 0.878
31 H 0.102 0.898
32 H 0.163 0.837
33 H 0.175 0.825
34 H 0.241 0.759
35 H 0.151 0.849
36 H 0.152 0.848
37 H 0.140 0.860
38 H 0.105 0.895
39 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 13.455 -6.638 -4.879 15.777
hybrid contribution 1.569 0.367 0.897 1.844
sum 15.024 -6.271 -3.982 16.760
Atomic orbital electron populations
1.21723 0.97170 1.00205 1.01021 1.21855 0.94897 0.94233 1.04467
1.20991 0.92505 0.95248 0.87771 0.91295 1.23296 0.95607 0.89553
1.11183 1.21041 0.75087 0.91760 0.73087 1.93192 1.91146 1.81163
1.51801 1.93182 1.30563 1.97134 1.95788 1.93171 1.85226 1.86864
1.52721 1.45909 1.16378 1.59246 1.16644 1.18164 0.81289 0.77311
0.87456 1.90681 1.51742 1.60407 1.41457 1.19883 1.00834 1.11908
0.95890 1.21145 0.97169 0.95709 0.92075 1.20792 0.98465 1.08454
0.98798 1.21134 0.94077 0.96936 0.97126 1.21197 1.00910 1.06760
0.95763 1.17900 0.92292 0.88009 0.92632 1.21071 0.93467 1.42965
0.96004 0.90100 1.28372 0.99636 0.92210 1.01450 1.70466 1.41148
1.26154 1.06630 0.83010 0.73572 0.77908 0.72176 1.18260 1.19950
1.19233 0.94437 0.92343 0.95549 0.87826 0.89794 0.83657 0.82468
0.75861 0.84946 0.84811 0.86026 0.89482 0.90526
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.59 8.51 71.98 0.61 -3.97 16
2 C -0.12 -2.48 5.61 30.59 0.17 -2.31 16
3 C 0.14 3.43 2.19 44.99 0.10 3.52 16
4 H 0.07 2.15 7.10 -2.38 -0.02 2.14 16
5 C -0.16 -2.32 4.88 30.60 0.15 -2.17 16
6 C 0.44 9.71 3.16 71.98 0.23 9.94 16
7 F -0.19 -5.21 15.18 44.97 0.68 -4.52 16
8 F -0.19 -3.74 17.32 44.97 0.78 -2.96 16
9 F -0.20 -5.39 16.71 44.97 0.75 -4.64 16
10 N -0.73 -22.74 3.71 -445.79 -1.65 -24.39 16
11 C 0.56 25.13 6.30 86.67 0.55 25.68 16
12 O -0.56 -29.11 10.69 -4.06 -0.04 -29.15 16
13 C -0.28 -13.45 5.92 -19.70 -0.12 -13.57 16
14 C -0.04 -1.67 9.53 22.51 0.21 -1.45 16
15 C -0.25 -9.46 10.03 22.41 0.22 -9.23 16
16 C -0.07 -3.18 10.01 22.26 0.22 -2.95 16
17 C -0.23 -11.62 7.87 22.72 0.18 -11.45 16
18 C 0.10 5.24 5.17 -21.11 -0.11 5.13 16
19 C -0.51 -29.31 7.65 23.42 0.18 -29.13 16
20 H 0.08 4.96 5.93 -2.91 -0.02 4.94 16
21 C 0.00 -0.08 5.04 85.37 0.43 0.35 16
22 N -0.82 -46.12 12.57 21.88 0.28 -45.85 16
23 Si 1.12 47.83 29.98 68.60 2.06 49.88 16
24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16
25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
26 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16
27 H 0.04 1.33 7.84 -2.39 -0.02 1.31 16
28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16
29 H 0.03 1.05 5.64 -2.39 -0.01 1.04 16
30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
32 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16
33 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16
34 H 0.40 10.54 5.90 -92.71 -0.55 9.99 16
35 H 0.13 4.00 6.41 -2.91 -0.02 3.98 16
36 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16
37 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16
38 H 0.09 4.69 6.94 -2.91 -0.02 4.67 16
39 H 0.28 16.38 6.55 -92.70 -0.61 15.77 16
Total: -1.00 -71.20 328.49 6.59 -64.61
By element:
Atomic # 1 Polarization: 27.91 SS G_CDS: 0.72 Total: 28.62 kcal
Atomic # 6 Polarization: -34.64 SS G_CDS: 3.03 Total: -31.61 kcal
Atomic # 7 Polarization: -68.86 SS G_CDS: -1.38 Total: -70.24 kcal
Atomic # 8 Polarization: -29.11 SS G_CDS: -0.04 Total: -29.15 kcal
Atomic # 9 Polarization: -14.33 SS G_CDS: 2.21 Total: -12.12 kcal
Atomic # 14 Polarization: 47.83 SS G_CDS: 2.06 Total: 49.88 kcal
Total: -71.20 6.59 -64.61 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601444612.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -138.879 kcal
(2) G-P(sol) polarization free energy of solvation -71.200 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.594 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -203.485 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds