Wall clock time and date at job start Tue Mar 31 2020 10:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 N 1.46503 * 109.46967 * 119.99651 * 2 1 3 5 5 C 1.46499 * 119.99833 * 293.81804 * 4 2 1 6 6 C 1.53000 * 109.46915 * 263.23941 * 5 4 2 7 7 F 1.39899 * 109.46905 * 65.63489 * 6 5 4 8 8 F 1.39905 * 109.47113 * 185.62948 * 6 5 4 9 9 F 1.39894 * 109.47601 * 305.62920 * 6 5 4 10 10 C 1.34774 * 119.99888 * 113.81159 * 4 2 1 11 11 O 1.21554 * 119.99788 * 175.24724 * 10 4 2 12 12 C 1.47882 * 120.00274 * 355.25190 * 10 4 2 13 13 C 1.39918 * 120.02591 * 136.77217 * 12 10 4 14 14 C 1.38328 * 120.36070 * 180.02562 * 13 12 10 15 15 C 1.37756 * 120.40828 * 359.96132 * 14 13 12 16 16 C 1.40753 * 120.04289 * 0.03927 * 15 14 13 17 17 C 1.41439 * 120.17881 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99434 * 146.25836 * 17 16 15 19 19 C 1.39939 * 119.99984 * 326.25978 * 17 16 15 20 20 N 1.30824 * 120.00120 * 355.80214 * 19 17 16 21 21 Si 1.86797 * 119.99859 * 175.79841 * 19 17 16 22 22 H 1.48504 * 109.46889 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47261 * 120.00090 * 21 19 17 24 24 H 1.48502 * 109.47348 * 240.00142 * 21 19 17 25 25 C 1.38989 * 120.02302 * 316.79751 * 12 10 4 26 26 H 1.09000 * 109.47174 * 300.00550 * 1 2 3 27 27 H 1.09000 * 109.46716 * 59.99963 * 1 2 3 28 28 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47174 * 239.99450 * 2 1 3 30 30 H 1.08998 * 109.46951 * 176.50046 * 3 2 1 31 31 H 1.09003 * 109.46779 * 296.49894 * 3 2 1 32 32 H 1.08996 * 109.46962 * 56.49697 * 3 2 1 33 33 H 1.09002 * 109.47217 * 23.24235 * 5 4 2 34 34 H 1.09002 * 109.47573 * 143.24210 * 5 4 2 35 35 H 1.08003 * 119.82079 * 0.02562 * 13 12 10 36 36 H 1.07996 * 119.79756 * 179.97438 * 14 13 12 37 37 H 1.07999 * 119.97984 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00018 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.20765 * 359.70057 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7795 -0.1160 2.5225 6 6 3.0132 0.6725 2.9664 7 9 3.1889 1.7762 2.1249 8 9 2.8364 1.1131 4.2825 9 9 4.1423 -0.1505 2.8980 10 6 2.6873 -1.8545 1.0766 11 8 3.1673 -2.3834 2.0601 12 6 2.8373 -2.4880 -0.2512 13 6 4.0689 -3.0315 -0.6325 14 6 4.2172 -3.6252 -1.8730 15 6 3.1543 -3.6891 -2.7470 16 6 1.9076 -3.1477 -2.3810 17 6 0.8145 -3.2112 -3.2763 18 1 -0.1894 -3.3268 -2.8953 19 6 1.0338 -3.1242 -4.6557 20 7 2.2390 -2.9020 -5.1137 21 14 -0.3942 -3.3255 -5.8429 22 1 -1.6440 -3.5658 -5.0777 23 1 -0.5410 -2.0907 -6.6546 24 1 -0.1330 -4.4796 -6.7403 25 6 1.7551 -2.5434 -1.1216 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1283 1.4431 0.0627 31 1 1.7289 1.9379 -0.9197 32 1 1.6264 1.9741 0.8569 33 1 0.9181 0.5506 2.4799 34 1 1.5841 -0.9168 3.2357 35 1 4.9085 -2.9872 0.0455 36 1 5.1721 -4.0415 -2.1581 37 1 3.2779 -4.1538 -3.7140 38 1 2.3910 -2.8421 -6.0698 39 1 0.8014 -2.1292 -0.8298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603961064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:56 Heat of formation + Delta-G solvation = -165.230130 kcal Electronic energy + Delta-G solvation = -27566.589304 eV Core-core repulsion = 23252.126311 eV Total energy + Delta-G solvation = -4314.462993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.98133 -47.57581 -47.36136 -39.97435 -37.26042 -36.45120 -33.70700 -32.20529 -30.50060 -29.99615 -28.42709 -27.11292 -25.38492 -23.88354 -22.59467 -21.13398 -20.93463 -19.23364 -18.42643 -18.27497 -17.65287 -17.25013 -16.24794 -15.78410 -15.30241 -14.94998 -14.60615 -14.42048 -14.33045 -14.09783 -13.89947 -13.71265 -13.56716 -13.56317 -13.35475 -12.99555 -12.82932 -12.52634 -12.30120 -12.03643 -11.92886 -11.76935 -11.71289 -11.26698 -11.23830 -11.04436 -10.82230 -10.58909 -10.47515 -10.32268 -9.59899 -9.33799 -9.25526 -8.75200 -7.66436 -7.50416 -6.78402 -4.53823 2.16307 2.65245 2.69378 3.02915 3.04526 3.06037 3.07853 3.47036 3.87675 3.95338 4.08507 4.36487 4.55280 4.86410 4.98900 5.12964 5.24100 5.34849 5.44673 5.57161 5.69029 5.75770 5.91960 6.05075 6.18792 6.24364 6.29170 6.40754 6.60456 6.72962 6.83715 6.93111 7.12765 7.24655 7.48138 7.60128 7.81151 7.87433 8.03004 8.44609 8.51565 8.74209 8.77338 10.16474 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.004212 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.467989 B = 6645.719197 C = 7368.202626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 C -0.167 4.167 4 N -0.606 5.606 5 C 0.079 3.921 6 C 0.429 3.571 7 F -0.180 7.180 8 F -0.189 7.189 9 F -0.169 7.169 10 C 0.571 3.429 11 O -0.533 6.533 12 C -0.118 4.118 13 C -0.170 4.170 14 C -0.117 4.117 15 C -0.124 4.124 16 C 0.101 3.899 17 C -0.467 4.467 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.810 5.810 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.273 1.273 25 C -0.188 4.188 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.280 0.720 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 7.866 7.621 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 C -0.225 4.225 4 N -0.340 5.340 5 C -0.047 4.047 6 C 0.373 3.627 7 F -0.162 7.162 8 F -0.171 7.171 9 F -0.150 7.150 10 C 0.363 3.637 11 O -0.410 6.410 12 C -0.121 4.121 13 C -0.190 4.190 14 C -0.136 4.136 15 C -0.144 4.144 16 C 0.099 3.901 17 C -0.497 4.497 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.436 5.436 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.208 4.208 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.672 7.614 7.911 11.301 hybrid contribution -0.350 0.258 -0.542 0.695 sum -3.022 7.872 7.369 11.199 Atomic orbital electron populations 1.22223 0.94892 1.02891 1.02023 1.21788 0.94562 0.93728 0.88979 1.22523 1.02233 0.95462 1.02277 1.47988 1.57937 1.23070 1.04997 1.22401 0.93567 0.99809 0.88963 1.21411 0.87805 0.78875 0.74601 1.93187 1.96146 1.56193 1.70675 1.93157 1.95527 1.90410 1.37983 1.93262 1.54279 1.71662 1.95840 1.19155 0.75440 0.78974 0.90163 1.90723 1.47131 1.63231 1.39879 1.19176 0.96577 1.04072 0.92273 1.20424 0.95583 1.05689 0.97321 1.20716 0.98162 1.00606 0.94083 1.21647 0.93203 1.00175 0.99356 1.17559 0.93349 0.88446 0.90732 1.19517 0.94435 1.45325 0.90440 0.90401 1.25832 0.96726 0.92387 0.99255 1.69740 1.21666 1.36602 1.15630 0.86201 0.81576 0.78616 0.79959 1.18546 1.19981 1.19877 1.21471 0.97028 1.05906 0.96348 0.93030 0.90856 0.91463 0.85244 0.91654 0.91418 0.92212 0.86253 0.86299 0.88438 0.88455 0.85762 0.90950 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.81 37.16 0.33 -1.65 16 2 C 0.11 1.61 2.36 -67.92 -0.16 1.45 16 3 C -0.17 -2.12 7.54 37.16 0.28 -1.84 16 4 N -0.61 -9.53 2.36 -167.19 -0.40 -9.92 16 5 C 0.08 1.00 4.83 -4.04 -0.02 0.98 16 6 C 0.43 5.97 3.30 37.16 0.12 6.10 16 7 F -0.18 -2.45 12.55 2.25 0.03 -2.43 16 8 F -0.19 -2.45 17.32 2.25 0.04 -2.41 16 9 F -0.17 -2.94 15.15 2.25 0.03 -2.91 16 10 C 0.57 11.28 6.75 -12.31 -0.08 11.20 16 11 O -0.53 -11.68 15.23 5.32 0.08 -11.60 16 12 C -0.12 -2.54 5.02 -105.04 -0.53 -3.07 16 13 C -0.17 -3.76 9.67 -38.92 -0.38 -4.14 16 14 C -0.12 -2.60 10.01 -39.72 -0.40 -2.99 16 15 C -0.12 -2.99 8.63 -38.81 -0.33 -3.32 16 16 C 0.10 2.45 5.51 -106.87 -0.59 1.86 16 17 C -0.47 -11.28 9.05 -37.73 -0.34 -11.62 16 18 H 0.08 1.81 7.85 -52.49 -0.41 1.40 16 19 C 0.07 1.72 5.33 -17.34 -0.09 1.63 16 20 N -0.81 -19.59 10.86 55.55 0.60 -18.98 16 21 Si 0.91 17.61 29.56 -169.99 -5.03 12.59 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.19 -4.09 7.10 -38.44 -0.27 -4.36 16 26 H 0.05 0.51 6.97 -51.93 -0.36 0.15 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.90 6.54 -51.93 -0.34 0.56 16 29 H 0.13 2.28 4.68 -51.93 -0.24 2.03 16 30 H 0.06 0.92 6.96 -51.93 -0.36 0.56 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.66 6.07 -51.93 -0.32 0.35 16 33 H 0.12 1.10 6.51 -51.93 -0.34 0.77 16 34 H 0.12 1.49 7.71 -51.93 -0.40 1.09 16 35 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 36 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.10 6.36 -52.49 -0.33 2.77 16 38 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 39 H 0.11 2.15 4.83 -52.49 -0.25 1.90 16 LS Contribution 323.42 15.07 4.87 4.87 Total: -1.00 -27.11 323.42 -6.41 -33.52 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.18 Total: 7.04 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.47 Total: -9.77 kcal Atomic # 7 Polarization: -29.11 SS G_CDS: 0.21 Total: -28.91 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.10 Total: -7.75 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.11 -6.41 -33.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603961064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.712 kcal (2) G-P(sol) polarization free energy of solvation -27.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds