Wall clock time and date at job start Tue Mar 31 2020 10:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 N 1.46503 * 109.46967 * 119.99651 * 2 1 3 5 5 C 1.46499 * 119.99833 * 293.81804 * 4 2 1 6 6 C 1.53000 * 109.46915 * 263.23941 * 5 4 2 7 7 F 1.39899 * 109.46905 * 65.63489 * 6 5 4 8 8 F 1.39905 * 109.47113 * 185.62948 * 6 5 4 9 9 F 1.39894 * 109.47601 * 305.62920 * 6 5 4 10 10 C 1.34774 * 119.99888 * 113.81159 * 4 2 1 11 11 O 1.21554 * 119.99788 * 175.24724 * 10 4 2 12 12 C 1.47882 * 120.00274 * 355.25190 * 10 4 2 13 13 C 1.39918 * 120.02591 * 136.77217 * 12 10 4 14 14 C 1.38328 * 120.36070 * 180.02562 * 13 12 10 15 15 C 1.37756 * 120.40828 * 359.96132 * 14 13 12 16 16 C 1.40753 * 120.04289 * 0.03927 * 15 14 13 17 17 C 1.41439 * 120.17881 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99434 * 146.25836 * 17 16 15 19 19 C 1.39939 * 119.99984 * 326.25978 * 17 16 15 20 20 N 1.30824 * 120.00120 * 355.80214 * 19 17 16 21 21 Si 1.86797 * 119.99859 * 175.79841 * 19 17 16 22 22 H 1.48504 * 109.46889 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47261 * 120.00090 * 21 19 17 24 24 H 1.48502 * 109.47348 * 240.00142 * 21 19 17 25 25 C 1.38989 * 120.02302 * 316.79751 * 12 10 4 26 26 H 1.09000 * 109.47174 * 300.00550 * 1 2 3 27 27 H 1.09000 * 109.46716 * 59.99963 * 1 2 3 28 28 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47174 * 239.99450 * 2 1 3 30 30 H 1.08998 * 109.46951 * 176.50046 * 3 2 1 31 31 H 1.09003 * 109.46779 * 296.49894 * 3 2 1 32 32 H 1.08996 * 109.46962 * 56.49697 * 3 2 1 33 33 H 1.09002 * 109.47217 * 23.24235 * 5 4 2 34 34 H 1.09002 * 109.47573 * 143.24210 * 5 4 2 35 35 H 1.08003 * 119.82079 * 0.02562 * 13 12 10 36 36 H 1.07996 * 119.79756 * 179.97438 * 14 13 12 37 37 H 1.07999 * 119.97984 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00018 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.20765 * 359.70057 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7795 -0.1160 2.5225 6 6 3.0132 0.6725 2.9664 7 9 3.1889 1.7762 2.1249 8 9 2.8364 1.1131 4.2825 9 9 4.1423 -0.1505 2.8980 10 6 2.6873 -1.8545 1.0766 11 8 3.1673 -2.3834 2.0601 12 6 2.8373 -2.4880 -0.2512 13 6 4.0689 -3.0315 -0.6325 14 6 4.2172 -3.6252 -1.8730 15 6 3.1543 -3.6891 -2.7470 16 6 1.9076 -3.1477 -2.3810 17 6 0.8145 -3.2112 -3.2763 18 1 -0.1894 -3.3268 -2.8953 19 6 1.0338 -3.1242 -4.6557 20 7 2.2390 -2.9020 -5.1137 21 14 -0.3942 -3.3255 -5.8429 22 1 -1.6440 -3.5658 -5.0777 23 1 -0.5410 -2.0907 -6.6546 24 1 -0.1330 -4.4796 -6.7403 25 6 1.7551 -2.5434 -1.1216 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1283 1.4431 0.0627 31 1 1.7289 1.9379 -0.9197 32 1 1.6264 1.9741 0.8569 33 1 0.9181 0.5506 2.4799 34 1 1.5841 -0.9168 3.2357 35 1 4.9085 -2.9872 0.0455 36 1 5.1721 -4.0415 -2.1581 37 1 3.2779 -4.1538 -3.7140 38 1 2.3910 -2.8421 -6.0698 39 1 0.8014 -2.1292 -0.8298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603961064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:55 Heat of formation + Delta-G solvation = -178.158643 kcal Electronic energy + Delta-G solvation = -27567.149926 eV Core-core repulsion = 23252.126311 eV Total energy + Delta-G solvation = -4315.023615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.10174 -48.64924 -48.56047 -41.43673 -38.96245 -37.82266 -35.46821 -33.35782 -32.08010 -31.78004 -29.76552 -28.12337 -27.17731 -25.16288 -23.99470 -22.66277 -22.54336 -20.65468 -19.61399 -19.41372 -19.08976 -18.46726 -17.81260 -17.37782 -16.75524 -16.59116 -16.03119 -15.67593 -15.51672 -15.26937 -15.17943 -14.97598 -14.93216 -14.79464 -14.72048 -14.54763 -14.11491 -13.93126 -13.57493 -13.48643 -13.13787 -13.05845 -12.87027 -12.83132 -12.69434 -12.53629 -12.22155 -12.13382 -11.93231 -11.73059 -11.33865 -11.07825 -10.86814 -10.04195 -9.40444 -9.31276 -8.53477 -6.38119 0.46791 0.92110 1.43876 1.45435 1.51284 1.58236 1.81692 1.97817 2.26321 2.78167 2.86184 3.02942 3.25882 3.57841 3.63758 3.88456 4.07827 4.15980 4.28336 4.37232 4.40961 4.52263 4.69173 4.78311 4.91744 4.96467 5.01091 5.11070 5.16259 5.20418 5.35083 5.41737 5.44972 5.54796 5.77103 5.96777 6.06431 6.16163 6.23331 6.63112 6.94224 6.95109 7.01375 8.43163 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.004212 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.467989 B = 6645.719197 C = 7368.202626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.108 3.892 3 C -0.161 4.161 4 N -0.597 5.597 5 C 0.077 3.923 6 C 0.429 3.571 7 F -0.178 7.178 8 F -0.181 7.181 9 F -0.194 7.194 10 C 0.570 3.430 11 O -0.560 6.560 12 C -0.124 4.124 13 C -0.183 4.183 14 C -0.116 4.116 15 C -0.148 4.148 16 C 0.076 3.924 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.036 3.964 20 N -0.840 5.840 21 Si 0.981 3.019 22 H -0.256 1.256 23 H -0.268 1.268 24 H -0.272 1.272 25 C -0.177 4.177 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.285 0.715 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 9.404 8.172 13.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.006 3.994 3 C -0.218 4.218 4 N -0.329 5.329 5 C -0.048 4.048 6 C 0.373 3.627 7 F -0.159 7.159 8 F -0.163 7.163 9 F -0.175 7.175 10 C 0.361 3.639 11 O -0.439 6.439 12 C -0.127 4.127 13 C -0.203 4.203 14 C -0.135 4.135 15 C -0.168 4.168 16 C 0.074 3.926 17 C -0.522 4.522 18 H 0.099 0.901 19 C -0.177 4.177 20 N -0.467 5.467 21 Si 0.803 3.197 22 H -0.180 1.180 23 H -0.193 1.193 24 H -0.197 1.197 25 C -0.197 4.197 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.182 0.818 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.608 9.184 8.473 13.318 hybrid contribution 0.300 -0.146 -0.639 0.721 sum -4.308 9.039 7.833 12.713 Atomic orbital electron populations 1.22188 0.92558 1.02616 1.04139 1.21830 0.96315 0.94132 0.87079 1.22472 1.01013 0.94320 1.04012 1.47901 1.56392 1.21731 1.06867 1.22749 0.94301 1.00652 0.87092 1.21554 0.87317 0.78824 0.74977 1.93194 1.96124 1.56010 1.70621 1.93173 1.95395 1.90284 1.37438 1.93220 1.55791 1.72508 1.95992 1.18858 0.75997 0.80166 0.88899 1.90707 1.48543 1.64429 1.40197 1.19460 0.96251 1.03588 0.93351 1.20609 0.96247 1.06053 0.97425 1.20900 0.98595 1.00155 0.93816 1.21591 0.94183 1.01721 0.99328 1.17892 0.93702 0.89137 0.91917 1.19752 0.94524 1.46560 0.91370 0.90119 1.26625 0.99136 0.91514 1.00466 1.69816 1.23508 1.37070 1.16299 0.85155 0.78404 0.78582 0.77580 1.17985 1.19333 1.19683 1.21605 0.97819 1.04806 0.95426 0.89824 0.89873 0.92871 0.88772 0.93573 0.90147 0.89918 0.81814 0.85798 0.87978 0.86474 0.87313 0.90424 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.81 71.98 0.63 -2.69 16 2 C 0.11 2.92 2.36 44.99 0.11 3.03 16 3 C -0.16 -3.66 7.54 71.98 0.54 -3.11 16 4 N -0.60 -17.72 2.36 -801.15 -1.89 -19.61 16 5 C 0.08 1.73 4.83 86.38 0.42 2.14 16 6 C 0.43 11.02 3.30 71.98 0.24 11.26 16 7 F -0.18 -4.41 12.55 44.97 0.56 -3.85 16 8 F -0.18 -4.25 17.32 44.97 0.78 -3.48 16 9 F -0.19 -6.60 15.15 44.97 0.68 -5.92 16 10 C 0.57 22.28 6.75 86.80 0.59 22.87 16 11 O -0.56 -24.41 15.23 -3.88 -0.06 -24.47 16 12 C -0.12 -5.38 5.02 -20.14 -0.10 -5.48 16 13 C -0.18 -8.25 9.67 22.70 0.22 -8.03 16 14 C -0.12 -5.28 10.01 22.18 0.22 -5.06 16 15 C -0.15 -7.39 8.63 22.77 0.20 -7.20 16 16 C 0.08 3.74 5.51 -21.32 -0.12 3.63 16 17 C -0.49 -24.09 9.05 23.47 0.21 -23.88 16 18 H 0.08 3.77 7.85 -2.91 -0.02 3.75 16 19 C 0.04 1.66 5.33 85.25 0.45 2.12 16 20 N -0.84 -41.36 10.86 21.82 0.24 -41.12 16 21 Si 0.98 35.76 29.56 68.60 2.03 37.79 16 22 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 23 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 24 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 25 C -0.18 -7.78 7.10 23.01 0.16 -7.62 16 26 H 0.08 1.24 6.97 -2.39 -0.02 1.22 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.29 6.54 -2.39 -0.02 1.28 16 29 H 0.09 3.28 4.68 -2.39 -0.01 3.27 16 30 H 0.05 1.23 6.96 -2.39 -0.02 1.22 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.50 6.07 -2.39 -0.01 1.48 16 33 H 0.16 2.19 6.51 -2.39 -0.02 2.18 16 34 H 0.12 2.76 7.71 -2.39 -0.02 2.74 16 35 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.11 5.67 6.36 -2.91 -0.02 5.66 16 38 H 0.29 12.83 8.30 -92.71 -0.77 12.07 16 39 H 0.13 4.96 4.83 -2.91 -0.01 4.95 16 Total: -1.00 -59.92 323.42 7.21 -52.71 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 1.10 Total: 25.98 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.77 Total: -18.04 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -1.66 Total: -60.73 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.06 Total: -24.47 kcal Atomic # 9 Polarization: -15.26 SS G_CDS: 2.02 Total: -13.24 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Total: -59.92 7.21 -52.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603961064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.451 kcal (2) G-P(sol) polarization free energy of solvation -59.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds