Wall clock time and date at job start Tue Mar 31 2020 11:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46994 * 2 1 4 4 C 1.46497 * 119.99983 * 73.74517 * 3 2 1 5 5 C 1.52999 * 109.47246 * 89.99838 * 4 3 2 6 6 C 1.53005 * 109.47450 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.46671 * 59.99943 * 6 5 4 8 8 F 1.39894 * 109.47354 * 179.97438 * 6 5 4 9 9 F 1.39895 * 109.47169 * 300.00466 * 6 5 4 10 10 C 1.34779 * 119.99806 * 253.73541 * 3 2 1 11 11 O 1.21546 * 119.99862 * 183.88275 * 10 3 2 12 12 C 1.47880 * 120.00045 * 3.89414 * 10 3 2 13 13 C 1.39923 * 120.02558 * 23.28763 * 12 10 3 14 14 C 1.38333 * 120.35703 * 179.74539 * 13 12 10 15 15 C 1.37751 * 120.41131 * 0.55489 * 14 13 12 16 16 C 1.40745 * 120.03985 * 359.70165 * 15 14 13 17 17 C 1.41441 * 120.17916 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99919 * 28.52539 * 17 16 15 19 19 C 1.39931 * 120.00210 * 208.52193 * 17 16 15 20 20 N 1.30823 * 120.00298 * 9.39462 * 19 17 16 21 21 Si 1.86802 * 120.00131 * 189.38966 * 19 17 16 22 22 H 1.48503 * 109.46877 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47292 * 120.00093 * 21 19 17 24 24 H 1.48503 * 109.47445 * 240.00476 * 21 19 17 25 25 C 1.39000 * 120.02547 * 203.56603 * 12 10 3 26 26 H 1.08995 * 109.46923 * 300.00152 * 1 2 3 27 27 H 1.09005 * 109.46774 * 59.99910 * 1 2 3 28 28 H 1.08991 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46923 * 239.99848 * 2 1 3 30 30 H 1.09005 * 109.46774 * 120.00090 * 2 1 3 31 31 H 1.08998 * 109.47396 * 329.99621 * 4 3 2 32 32 H 1.09003 * 109.46791 * 209.99477 * 4 3 2 33 33 H 1.09000 * 109.47142 * 300.00044 * 5 4 3 34 34 H 1.08999 * 109.47602 * 59.99763 * 5 4 3 35 35 H 1.08001 * 119.82294 * 0.02562 * 13 12 10 36 36 H 1.07999 * 119.79344 * 180.27907 * 14 13 12 37 37 H 1.08000 * 119.97930 * 179.71762 * 15 14 13 38 38 H 0.96997 * 120.00582 * 180.02562 * 20 19 17 39 39 H 1.07992 * 120.19981 * 359.95151 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9277 2.1902 1.2180 5 6 3.2017 2.0102 2.0458 6 6 3.1074 2.8556 3.3176 7 9 2.0010 2.4452 4.0692 8 9 4.2720 2.6905 4.0748 9 9 2.9623 4.2034 2.9720 10 6 2.5512 1.9076 -1.1205 11 8 3.0204 3.0286 -1.1017 12 6 2.5646 1.1212 -2.3729 13 6 1.6415 0.0865 -2.5599 14 6 1.6445 -0.6500 -3.7308 15 6 2.5632 -0.3810 -4.7214 16 6 3.5030 0.6524 -4.5490 17 6 4.4473 0.9315 -5.5643 18 1 4.2073 0.7241 -6.5967 19 6 5.6925 1.4762 -5.2313 20 7 6.0569 1.5571 -3.9775 21 14 6.8345 2.0878 -6.5771 22 1 6.1925 1.8856 -7.9008 23 1 7.1076 3.5334 -6.3755 24 1 8.1111 1.3308 -6.5249 25 6 3.4981 1.4057 -3.3628 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.0658 1.8701 1.8034 32 1 1.8145 3.2404 0.9490 33 1 3.3150 0.9600 2.3148 34 1 4.0637 2.3302 1.4605 35 1 0.9197 -0.1355 -1.7877 36 1 0.9250 -1.4437 -3.8674 37 1 2.5623 -0.9634 -5.6309 38 1 6.9198 1.9351 -3.7465 39 1 4.2148 2.2010 -3.2211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604523895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:35 Heat of formation + Delta-G solvation = -150.982673 kcal Electronic energy + Delta-G solvation = -26514.309319 eV Core-core repulsion = 22200.464143 eV Total energy + Delta-G solvation = -4313.845176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.16938 -47.68002 -47.62777 -39.92649 -37.20950 -36.06289 -34.00852 -33.00220 -30.20678 -30.07115 -29.35466 -26.09841 -25.23787 -23.35359 -22.85164 -21.29746 -21.11445 -19.03354 -18.61888 -18.30027 -17.58701 -17.51496 -16.18807 -16.01667 -15.27747 -15.09139 -14.80566 -14.65871 -14.45979 -14.09316 -13.92521 -13.84712 -13.78533 -13.67409 -13.29744 -13.17368 -12.75668 -12.62444 -12.53257 -12.24072 -12.04415 -11.71137 -11.66903 -11.26392 -11.23508 -11.12934 -11.02248 -10.48340 -10.27191 -10.06870 -9.63842 -9.31090 -9.03490 -8.54192 -7.67450 -7.48502 -6.78845 -4.48209 2.14327 2.62536 2.75405 3.06062 3.08797 3.10786 3.23894 3.67422 3.87403 3.89915 3.99986 4.00659 4.57472 4.76248 4.87547 5.08626 5.20973 5.27002 5.33558 5.48961 5.58881 5.68944 5.79521 5.85530 6.00559 6.06213 6.21672 6.34024 6.62398 6.76718 6.94372 6.96680 7.17744 7.33028 7.57551 7.68245 7.81039 7.94656 8.12632 8.46078 8.73959 8.77781 8.80376 10.14656 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003824 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.208926 B = 7320.943411 C = 8778.097678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.066 3.934 3 N -0.612 5.612 4 C 0.118 3.882 5 C -0.186 4.186 6 C 0.457 3.543 7 F -0.187 7.187 8 F -0.186 7.186 9 F -0.180 7.180 10 C 0.567 3.433 11 O -0.541 6.541 12 C -0.129 4.129 13 C -0.247 4.247 14 C -0.102 4.102 15 C -0.206 4.206 16 C 0.098 3.902 17 C -0.459 4.459 18 H 0.081 0.919 19 C 0.071 3.929 20 N -0.797 5.797 21 Si 0.913 3.087 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.087 4.087 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.136 0.864 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.282 0.718 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -2.358 11.439 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.056 4.056 3 N -0.346 5.346 4 C -0.006 4.006 5 C -0.225 4.225 6 C 0.402 3.598 7 F -0.168 7.168 8 F -0.167 7.167 9 F -0.162 7.162 10 C 0.360 3.640 11 O -0.418 6.418 12 C -0.133 4.133 13 C -0.266 4.266 14 C -0.120 4.120 15 C -0.226 4.226 16 C 0.096 3.904 17 C -0.488 4.488 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.423 5.423 21 Si 0.738 3.262 22 H -0.184 1.184 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.107 4.107 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.993 -1.657 11.607 13.167 hybrid contribution 0.621 0.283 -0.152 0.699 sum -5.372 -1.374 11.455 12.727 Atomic orbital electron populations 1.22252 0.96221 1.02355 1.02457 1.22677 0.94331 0.82886 1.05683 1.47764 1.62945 1.13897 1.09963 1.21190 0.94724 0.98486 0.86201 1.23341 1.04843 1.01451 0.92889 1.20516 0.73297 0.79547 0.86400 1.93168 1.54395 1.90215 1.79055 1.93183 1.49499 1.95385 1.78653 1.93205 1.95430 1.35543 1.92017 1.19035 0.75578 0.85988 0.83444 1.90705 1.45734 1.20018 1.85392 1.19426 1.00865 0.98956 0.94020 1.21486 1.04038 1.01222 0.99827 1.20511 0.98297 0.99030 0.94202 1.21199 1.01364 1.00484 0.99540 1.17619 0.91198 0.89205 0.92421 1.19634 0.97882 1.36418 0.94911 0.90130 1.25931 0.98976 0.93335 0.96380 1.69738 1.20859 1.33525 1.18164 0.86169 0.79539 0.79142 0.81357 1.18412 1.19645 1.19903 1.21713 0.96908 0.99294 0.92825 0.92659 0.91288 0.91390 0.84659 0.92002 0.89738 0.88880 0.87281 0.86521 0.85161 0.88808 0.88614 0.90660 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.06 37.16 0.34 -1.54 16 2 C 0.07 0.85 5.60 -4.04 -0.02 0.83 16 3 N -0.61 -9.62 2.52 -174.79 -0.44 -10.06 16 4 C 0.12 1.55 5.07 -4.04 -0.02 1.53 16 5 C -0.19 -2.23 5.58 -26.73 -0.15 -2.38 16 6 C 0.46 5.42 3.16 37.16 0.12 5.54 16 7 F -0.19 -2.11 16.80 2.25 0.04 -2.07 16 8 F -0.19 -2.30 17.32 2.25 0.04 -2.26 16 9 F -0.18 -2.41 16.80 2.25 0.04 -2.37 16 10 C 0.57 11.82 7.51 -12.31 -0.09 11.73 16 11 O -0.54 -12.92 16.19 5.33 0.09 -12.83 16 12 C -0.13 -2.91 5.59 -105.04 -0.59 -3.50 16 13 C -0.25 -4.81 7.51 -38.92 -0.29 -5.10 16 14 C -0.10 -2.04 10.01 -39.72 -0.40 -2.44 16 15 C -0.21 -4.69 9.78 -38.81 -0.38 -5.07 16 16 C 0.10 2.51 5.56 -106.87 -0.59 1.92 16 17 C -0.46 -11.82 9.07 -37.73 -0.34 -12.16 16 18 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 19 C 0.07 1.76 5.28 -17.35 -0.09 1.67 16 20 N -0.80 -20.62 10.75 55.55 0.60 -20.02 16 21 Si 0.91 18.58 29.57 -169.99 -5.03 13.56 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 C -0.09 -2.25 8.20 -38.44 -0.32 -2.57 16 26 H 0.05 0.53 7.34 -51.93 -0.38 0.15 16 27 H 0.07 0.85 7.04 -51.93 -0.37 0.48 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.14 2.02 3.98 -52.82 -0.21 1.81 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.89 6.90 -51.93 -0.36 0.53 16 32 H 0.09 1.38 7.14 -51.93 -0.37 1.00 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.13 2.07 2.42 -52.49 -0.13 1.94 16 36 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.14 3.81 5.91 -52.49 -0.31 3.50 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -28.43 333.79 -6.67 -35.11 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.21 Total: 7.45 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.83 Total: -11.53 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 0.16 Total: -30.08 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.11 Total: -6.71 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.43 -6.67 -35.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604523895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.873 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds