Wall clock time and date at job start Tue Mar 31 2020 11:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46994 * 2 1 4 4 C 1.46497 * 119.99983 * 73.74517 * 3 2 1 5 5 C 1.52999 * 109.47246 * 89.99838 * 4 3 2 6 6 C 1.53005 * 109.47450 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.46671 * 59.99943 * 6 5 4 8 8 F 1.39894 * 109.47354 * 179.97438 * 6 5 4 9 9 F 1.39895 * 109.47169 * 300.00466 * 6 5 4 10 10 C 1.34779 * 119.99806 * 253.73541 * 3 2 1 11 11 O 1.21546 * 119.99862 * 183.88275 * 10 3 2 12 12 C 1.47880 * 120.00045 * 3.89414 * 10 3 2 13 13 C 1.39923 * 120.02558 * 23.28763 * 12 10 3 14 14 C 1.38333 * 120.35703 * 179.74539 * 13 12 10 15 15 C 1.37751 * 120.41131 * 0.55489 * 14 13 12 16 16 C 1.40745 * 120.03985 * 359.70165 * 15 14 13 17 17 C 1.41441 * 120.17916 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99919 * 28.52539 * 17 16 15 19 19 C 1.39931 * 120.00210 * 208.52193 * 17 16 15 20 20 N 1.30823 * 120.00298 * 9.39462 * 19 17 16 21 21 Si 1.86802 * 120.00131 * 189.38966 * 19 17 16 22 22 H 1.48503 * 109.46877 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47292 * 120.00093 * 21 19 17 24 24 H 1.48503 * 109.47445 * 240.00476 * 21 19 17 25 25 C 1.39000 * 120.02547 * 203.56603 * 12 10 3 26 26 H 1.08995 * 109.46923 * 300.00152 * 1 2 3 27 27 H 1.09005 * 109.46774 * 59.99910 * 1 2 3 28 28 H 1.08991 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46923 * 239.99848 * 2 1 3 30 30 H 1.09005 * 109.46774 * 120.00090 * 2 1 3 31 31 H 1.08998 * 109.47396 * 329.99621 * 4 3 2 32 32 H 1.09003 * 109.46791 * 209.99477 * 4 3 2 33 33 H 1.09000 * 109.47142 * 300.00044 * 5 4 3 34 34 H 1.08999 * 109.47602 * 59.99763 * 5 4 3 35 35 H 1.08001 * 119.82294 * 0.02562 * 13 12 10 36 36 H 1.07999 * 119.79344 * 180.27907 * 14 13 12 37 37 H 1.08000 * 119.97930 * 179.71762 * 15 14 13 38 38 H 0.96997 * 120.00582 * 180.02562 * 20 19 17 39 39 H 1.07992 * 120.19981 * 359.95151 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9277 2.1902 1.2180 5 6 3.2017 2.0102 2.0458 6 6 3.1074 2.8556 3.3176 7 9 2.0010 2.4452 4.0692 8 9 4.2720 2.6905 4.0748 9 9 2.9623 4.2034 2.9720 10 6 2.5512 1.9076 -1.1205 11 8 3.0204 3.0286 -1.1017 12 6 2.5646 1.1212 -2.3729 13 6 1.6415 0.0865 -2.5599 14 6 1.6445 -0.6500 -3.7308 15 6 2.5632 -0.3810 -4.7214 16 6 3.5030 0.6524 -4.5490 17 6 4.4473 0.9315 -5.5643 18 1 4.2073 0.7241 -6.5967 19 6 5.6925 1.4762 -5.2313 20 7 6.0569 1.5571 -3.9775 21 14 6.8345 2.0878 -6.5771 22 1 6.1925 1.8856 -7.9008 23 1 7.1076 3.5334 -6.3755 24 1 8.1111 1.3308 -6.5249 25 6 3.4981 1.4057 -3.3628 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.0658 1.8701 1.8034 32 1 1.8145 3.2404 0.9490 33 1 3.3150 0.9600 2.3148 34 1 4.0637 2.3302 1.4605 35 1 0.9197 -0.1355 -1.7877 36 1 0.9250 -1.4437 -3.8674 37 1 2.5623 -0.9634 -5.6309 38 1 6.9198 1.9351 -3.7465 39 1 4.2148 2.2010 -3.2211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604523895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:34 Heat of formation + Delta-G solvation = -165.831265 kcal Electronic energy + Delta-G solvation = -26514.953203 eV Core-core repulsion = 22200.464143 eV Total energy + Delta-G solvation = -4314.489060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.15064 -48.65663 -48.61721 -41.42747 -38.91230 -37.50069 -35.66858 -34.25679 -31.74281 -31.55728 -30.89497 -27.54504 -26.78955 -24.59171 -23.97984 -22.84994 -22.69555 -20.44729 -19.62321 -19.49740 -19.12024 -18.53181 -17.65563 -17.62989 -16.78383 -16.68615 -16.06722 -15.81510 -15.53539 -15.38135 -15.08982 -15.01529 -14.85224 -14.79089 -14.72912 -14.56698 -14.32573 -14.09201 -13.94317 -13.43868 -13.24401 -13.05462 -12.87291 -12.77885 -12.66135 -12.56824 -12.24862 -12.03752 -11.86994 -11.76444 -11.31801 -11.09599 -10.66141 -9.87810 -9.40559 -9.26905 -8.60493 -6.39796 0.40660 1.01084 1.36507 1.45452 1.51601 1.57053 2.00740 2.07221 2.19829 2.77898 2.86157 2.98459 3.03179 3.63561 3.68520 3.85161 3.95880 4.10914 4.25937 4.38000 4.46524 4.56751 4.59247 4.70249 4.79278 4.89953 4.95115 5.06176 5.11366 5.21683 5.33414 5.42860 5.52683 5.58536 5.85874 5.94984 6.07700 6.27715 6.35697 6.62993 6.90332 6.95697 7.19736 8.34803 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003824 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.208926 B = 7320.943411 C = 8778.097678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.057 3.943 3 N -0.599 5.599 4 C 0.115 3.885 5 C -0.179 4.179 6 C 0.465 3.535 7 F -0.178 7.178 8 F -0.188 7.188 9 F -0.192 7.192 10 C 0.560 3.440 11 O -0.586 6.586 12 C -0.141 4.141 13 C -0.218 4.218 14 C -0.101 4.101 15 C -0.210 4.210 16 C 0.065 3.935 17 C -0.498 4.498 18 H 0.081 0.919 19 C 0.027 3.973 20 N -0.838 5.838 21 Si 0.983 3.017 22 H -0.253 1.253 23 H -0.272 1.272 24 H -0.264 1.264 25 C -0.126 4.126 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.176 0.824 36 H 0.141 0.859 37 H 0.107 0.893 38 H 0.284 0.716 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.723 -4.481 12.976 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.063 4.063 3 N -0.330 5.330 4 C -0.008 4.008 5 C -0.219 4.219 6 C 0.410 3.590 7 F -0.159 7.159 8 F -0.169 7.169 9 F -0.173 7.173 10 C 0.352 3.648 11 O -0.467 6.467 12 C -0.144 4.144 13 C -0.236 4.236 14 C -0.119 4.119 15 C -0.230 4.230 16 C 0.062 3.938 17 C -0.528 4.528 18 H 0.099 0.901 19 C -0.186 4.186 20 N -0.465 5.465 21 Si 0.804 3.196 22 H -0.176 1.176 23 H -0.197 1.197 24 H -0.189 1.189 25 C -0.146 4.146 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.110 0.890 35 H 0.192 0.808 36 H 0.159 0.841 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.303 -3.826 13.177 16.038 hybrid contribution 1.117 0.830 -0.440 1.459 sum -7.187 -2.996 12.737 14.928 Atomic orbital electron populations 1.22240 0.93784 1.04337 1.02616 1.22878 0.96210 0.80854 1.06400 1.47748 1.60989 1.15122 1.09136 1.21390 0.96725 0.97259 0.85418 1.23246 1.03209 1.02969 0.92453 1.20373 0.73397 0.78930 0.86288 1.93185 1.53886 1.90037 1.78827 1.93182 1.49746 1.95342 1.78660 1.93191 1.95487 1.36516 1.92138 1.18928 0.75990 0.85381 0.84526 1.90677 1.47920 1.21897 1.86214 1.19738 1.00591 0.99863 0.94235 1.22099 1.02685 0.98451 1.00390 1.21022 0.98055 0.99750 0.93096 1.21500 1.01028 0.99637 1.00836 1.17938 0.92527 0.90530 0.92758 1.19886 0.99053 1.38803 0.95093 0.90118 1.26777 1.00246 0.93051 0.98486 1.69854 1.21397 1.35117 1.20097 0.85134 0.77590 0.78282 0.78579 1.17603 1.19733 1.18899 1.21490 0.98433 0.99862 0.94849 0.90859 0.92845 0.88475 0.86802 0.88428 0.85818 0.90951 0.84578 0.89024 0.80773 0.84102 0.87468 0.90599 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.06 71.98 0.65 -2.10 16 2 C 0.06 1.23 5.60 86.38 0.48 1.71 16 3 N -0.60 -17.64 2.52 -825.19 -2.08 -19.72 16 4 C 0.12 2.78 5.07 86.38 0.44 3.22 16 5 C -0.18 -4.00 5.58 30.60 0.17 -3.83 16 6 C 0.46 10.23 3.16 71.98 0.23 10.46 16 7 F -0.18 -3.48 16.80 44.97 0.76 -2.73 16 8 F -0.19 -4.38 17.32 44.97 0.78 -3.60 16 9 F -0.19 -5.02 16.80 44.97 0.76 -4.26 16 10 C 0.56 23.70 7.51 86.80 0.65 24.36 16 11 O -0.59 -29.49 16.19 -3.86 -0.06 -29.55 16 12 C -0.14 -6.45 5.59 -20.13 -0.11 -6.56 16 13 C -0.22 -8.01 7.51 22.70 0.17 -7.84 16 14 C -0.10 -3.78 10.01 22.18 0.22 -3.56 16 15 C -0.21 -9.53 9.78 22.77 0.22 -9.30 16 16 C 0.06 3.46 5.56 -21.32 -0.12 3.34 16 17 C -0.50 -27.07 9.07 23.47 0.21 -26.86 16 18 H 0.08 4.16 7.86 -2.91 -0.02 4.14 16 19 C 0.03 1.42 5.28 85.25 0.45 1.87 16 20 N -0.84 -46.37 10.75 21.82 0.23 -46.14 16 21 Si 0.98 39.84 29.57 68.60 2.03 41.87 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 C -0.13 -6.87 8.20 23.01 0.19 -6.69 16 26 H 0.07 0.97 7.34 -2.39 -0.02 0.96 16 27 H 0.05 1.06 7.04 -2.38 -0.02 1.04 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.11 2.97 3.98 -3.22 -0.01 2.96 16 30 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.12 2.05 6.90 -2.39 -0.02 2.03 16 32 H 0.07 2.10 7.14 -2.39 -0.02 2.08 16 33 H 0.14 2.28 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.18 4.82 2.42 -2.91 -0.01 4.81 16 36 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.28 14.46 8.30 -92.71 -0.77 13.69 16 39 H 0.10 6.02 5.91 -2.91 -0.02 6.00 16 Total: -1.00 -68.50 333.79 7.37 -61.13 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 1.10 Total: 24.77 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.86 Total: -21.78 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -1.84 Total: -65.85 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.06 Total: -29.55 kcal Atomic # 9 Polarization: -12.88 SS G_CDS: 2.29 Total: -10.59 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -68.50 7.37 -61.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604523895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.702 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds