Wall clock time and date at job start Tue Mar 31 2020 11:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.47364 * 300.00354 * 15 13 12 17 17 C 1.53007 * 109.46728 * 60.00210 * 15 13 12 18 18 C 1.50700 * 109.47251 * 180.02562 * 15 13 12 19 19 C 1.38260 * 119.99884 * 300.00141 * 18 15 13 20 20 C 1.38209 * 119.99783 * 180.02562 * 19 18 15 21 21 C 1.38261 * 120.00186 * 359.97438 * 20 19 18 22 22 C 1.38215 * 119.99938 * 359.97438 * 21 20 19 23 23 C 1.38207 * 119.99861 * 119.73067 * 18 15 13 24 24 C 1.50706 * 120.00270 * 359.97438 * 23 18 15 25 25 F 1.39898 * 109.46900 * 180.02562 * 24 23 18 26 26 F 1.39905 * 109.46659 * 300.00079 * 24 23 18 27 27 F 1.39895 * 109.46935 * 60.00261 * 24 23 18 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 32 32 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 33 33 H 1.08997 * 109.47081 * 59.99970 * 17 15 13 34 34 H 1.09002 * 109.46869 * 180.02562 * 17 15 13 35 35 H 1.08994 * 109.47155 * 300.00116 * 17 15 13 36 36 H 1.08002 * 119.99855 * 359.97438 * 19 18 15 37 37 H 1.07995 * 120.00056 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00026 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.00013 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 1 3.6479 -1.1211 -3.3988 17 6 1.7042 -1.8821 -3.9315 18 6 2.7002 0.2400 -4.7412 19 6 1.5454 0.8700 -5.1667 20 6 1.5924 1.7579 -6.2249 21 6 2.7942 2.0165 -6.8575 22 6 3.9489 1.3875 -6.4314 23 6 3.9026 0.5027 -5.3699 24 6 5.1625 -0.1789 -4.9018 25 9 6.2408 0.2446 -5.6860 26 9 5.4016 0.1513 -3.5635 27 9 5.0146 -1.5649 -5.0209 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7096 1.1617 3.4844 32 1 2.2491 -1.6316 -1.1527 33 1 0.7051 -1.4896 -4.1206 34 1 2.0674 -2.3963 -4.8214 35 1 1.6675 -2.5825 -3.0972 36 1 0.6065 0.6676 -4.6728 37 1 0.6903 2.2497 -6.5576 38 1 2.8309 2.7100 -7.6846 39 1 4.8876 1.5892 -6.9258 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610239231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:43 Heat of formation + Delta-G solvation = -188.711553 kcal Electronic energy + Delta-G solvation = -27133.527679 eV Core-core repulsion = 22818.046456 eV Total energy + Delta-G solvation = -4315.481223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.30436 -48.79371 -48.71075 -41.37456 -39.84317 -36.75600 -35.33689 -34.24752 -32.96301 -31.26858 -30.07008 -27.34379 -27.01836 -25.84890 -23.93727 -23.05116 -22.15517 -20.93542 -19.60942 -19.56004 -19.36483 -18.77642 -17.54159 -17.40148 -16.81967 -16.34817 -16.04557 -15.89873 -15.61610 -15.51474 -15.35974 -15.15515 -14.91179 -14.86604 -14.76898 -14.64000 -14.34393 -13.91233 -13.77198 -13.64299 -13.22877 -13.12809 -12.97648 -12.87292 -12.78530 -12.63796 -12.26881 -12.14232 -12.09594 -11.93879 -11.11637 -10.71869 -10.57139 -10.15471 -9.83574 -9.76094 -8.18384 -6.35727 -0.05716 0.29045 1.44169 1.44788 1.55393 1.59845 1.76535 2.31016 2.45966 2.63423 2.73236 2.96259 3.12102 3.35504 3.39630 3.68263 3.95394 4.07706 4.10841 4.18124 4.39905 4.43273 4.66238 4.74581 4.77835 4.81820 4.91908 4.94805 5.09089 5.14553 5.22734 5.38403 5.43166 5.44517 5.59886 5.68314 5.83867 5.89988 6.09686 6.71600 6.92609 7.31047 7.51296 8.87866 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.003925 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.772477 B = 7132.650639 C = 7869.292072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.271 3.729 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.260 1.260 12 N -0.703 5.703 13 C 0.508 3.492 14 O -0.585 6.585 15 C -0.084 4.084 16 H 0.102 0.898 17 C -0.133 4.133 18 C -0.028 4.028 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.116 4.116 22 C -0.080 4.080 23 C -0.197 4.197 24 C 0.506 3.494 25 F -0.173 7.173 26 F -0.188 7.188 27 F -0.174 7.174 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -3.889 -20.841 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.168 3.832 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.184 1.184 12 N -0.351 5.351 13 C 0.294 3.706 14 O -0.466 6.466 15 C -0.105 4.105 16 H 0.120 0.880 17 C -0.190 4.190 18 C -0.029 4.029 19 C -0.122 4.122 20 C -0.105 4.105 21 C -0.134 4.134 22 C -0.098 4.098 23 C -0.199 4.199 24 C 0.452 3.548 25 F -0.154 7.154 26 F -0.170 7.170 27 F -0.155 7.155 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.175 0.825 38 H 0.187 0.813 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.940 -2.978 -20.694 21.275 hybrid contribution 0.595 -0.568 1.466 1.681 sum 4.535 -3.546 -19.227 20.071 Atomic orbital electron populations 1.21861 0.97920 0.99528 0.99600 1.18347 0.91342 0.91735 0.81756 0.98610 1.21543 1.32597 1.13580 0.90890 0.91052 1.25775 0.94822 0.95582 1.02241 1.70047 1.36947 1.23893 1.24599 0.85363 0.77750 0.79234 0.78107 1.20538 1.20772 1.18352 1.46253 1.65109 1.14159 1.09609 1.20807 0.77572 0.87025 0.85185 1.90643 1.52619 1.17667 1.85686 1.20563 1.03104 0.96525 0.90352 0.88040 1.21791 0.98145 0.95280 1.03831 1.19167 0.92986 0.96469 0.94240 1.21066 0.97525 0.96813 0.96790 1.21726 0.99951 0.95188 0.93675 1.21548 0.91064 0.99772 1.00999 1.21262 1.01196 0.93489 0.93845 1.19915 0.91233 1.05367 1.03360 1.18416 0.84552 0.77041 0.74776 1.93147 1.58190 1.89773 1.74280 1.93234 1.95213 1.92386 1.36152 1.93191 1.95750 1.30993 1.95561 0.91594 0.93956 0.96696 0.92536 0.76178 0.91574 0.89214 0.90308 0.85954 0.82466 0.81309 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 9.26 71.98 0.67 -5.90 16 2 C 0.27 14.24 2.56 44.24 0.11 14.36 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 4 C -0.55 -29.36 8.73 25.60 0.22 -29.14 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -52.87 11.32 21.45 0.24 -52.63 16 8 Si 0.97 42.36 29.54 68.60 2.03 44.38 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 12 N -0.70 -29.75 4.96 -446.09 -2.21 -31.96 16 13 C 0.51 20.64 6.99 87.66 0.61 21.26 16 14 O -0.59 -28.53 14.77 -3.05 -0.05 -28.58 16 15 C -0.08 -2.54 2.28 -12.29 -0.03 -2.57 16 16 H 0.10 3.01 4.72 -2.39 -0.01 3.00 16 17 C -0.13 -3.04 8.90 71.98 0.64 -2.40 16 18 C -0.03 -0.80 4.36 -19.87 -0.09 -0.89 16 19 C -0.10 -2.76 7.93 22.27 0.18 -2.59 16 20 C -0.09 -1.74 10.05 22.27 0.22 -1.52 16 21 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 22 C -0.08 -1.62 9.43 22.27 0.21 -1.41 16 23 C -0.20 -5.16 5.37 -19.86 -0.11 -5.26 16 24 C 0.51 13.45 2.78 71.24 0.20 13.65 16 25 F -0.17 -4.10 15.97 44.97 0.72 -3.38 16 26 F -0.19 -6.07 15.83 44.97 0.71 -5.35 16 27 F -0.17 -4.35 15.82 44.97 0.71 -3.63 16 28 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.40 14.53 7.96 -92.71 -0.74 13.79 16 33 H 0.07 1.50 7.39 -2.39 -0.02 1.48 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.66 7.56 -2.39 -0.02 1.64 16 36 H 0.12 3.41 7.52 -2.91 -0.02 3.39 16 37 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 38 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.16 2.41 7.16 -2.91 -0.02 2.39 16 Total: -1.00 -68.56 336.08 6.03 -62.52 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.36 Total: 21.47 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 3.52 Total: -2.84 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.97 Total: -84.59 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 9 Polarization: -14.51 SS G_CDS: 2.14 Total: -12.37 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -68.56 6.03 -62.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610239231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.188 kcal (2) G-P(sol) polarization free energy of solvation -68.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds