Wall clock time and date at job start Tue Mar 31 2020 10:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46833 * 2 1 4 4 N 1.46496 * 109.47143 * 120.00010 * 2 1 3 5 5 C 1.46502 * 119.99953 * 299.99992 * 4 2 1 6 6 C 1.50697 * 109.47202 * 270.00009 * 5 4 2 7 7 H 1.07999 * 120.00168 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00234 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99746 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00321 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47446 * 89.99856 * 10 8 6 12 12 H 1.48503 * 109.47333 * 209.99719 * 10 8 6 13 13 H 1.48499 * 109.47227 * 329.99950 * 10 8 6 14 14 C 1.34776 * 120.00007 * 120.00444 * 4 2 1 15 15 O 1.21283 * 120.00218 * 180.02562 * 14 4 2 16 16 C 1.50703 * 120.00077 * 359.97438 * 14 4 2 17 17 C 1.50697 * 109.46992 * 180.02562 * 16 14 4 18 18 C 1.38244 * 119.97664 * 264.97395 * 17 16 14 19 19 C 1.38358 * 120.02445 * 179.74738 * 18 17 16 20 20 F 1.35101 * 120.01171 * 180.30523 * 19 18 17 21 21 C 1.38688 * 119.97835 * 0.57546 * 19 18 17 22 22 F 1.35104 * 120.02052 * 179.69753 * 21 19 18 23 23 C 1.38345 * 119.95689 * 359.42955 * 21 19 18 24 24 C 1.38419 * 119.97809 * 85.00442 * 17 16 14 25 25 F 1.35097 * 119.99101 * 359.97021 * 24 17 16 26 26 H 1.09000 * 109.47197 * 300.00122 * 1 2 3 27 27 H 1.09007 * 109.47497 * 60.00035 * 1 2 3 28 28 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46964 * 240.00290 * 2 1 3 30 30 H 1.08997 * 109.46744 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46855 * 299.99865 * 3 2 1 32 32 H 1.08995 * 109.47108 * 60.00378 * 3 2 1 33 33 H 1.08995 * 109.47215 * 30.00297 * 5 4 2 34 34 H 1.08997 * 109.47104 * 150.00151 * 5 4 2 35 35 H 0.97003 * 119.99786 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47204 * 60.00132 * 16 14 4 37 37 H 1.09005 * 109.47081 * 300.00605 * 16 14 4 38 38 H 1.08006 * 119.98880 * 0.04719 * 18 17 16 39 39 H 1.07997 * 120.01485 * 180.29410 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1901 2.5267 6 6 2.7031 0.8019 2.9830 7 1 3.5431 1.0357 2.3458 8 6 2.5816 1.4101 4.2143 9 7 1.5589 1.1249 4.9906 10 14 3.8687 2.6401 4.7796 11 1 3.4749 4.0042 4.3442 12 1 3.9715 2.6037 6.2606 13 1 5.1831 2.2905 4.1834 14 6 2.7932 -1.7863 1.0725 15 8 3.1971 -2.3584 2.0627 16 6 3.1569 -2.3015 -0.2963 17 6 4.0229 -3.5270 -0.1580 18 6 5.3996 -3.4081 -0.1993 19 6 6.1958 -4.5320 -0.0672 20 9 7.5413 -4.4147 -0.1014 21 6 5.6121 -5.7796 0.0948 22 9 6.3887 -6.8783 0.2178 23 6 4.2344 -5.8976 0.1360 24 6 3.4394 -4.7709 0.0097 25 9 2.0939 -4.8858 0.0500 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.6904 0.2973 2.4844 34 1 1.6238 -1.0226 3.2291 35 1 1.4733 1.5531 5.8568 36 1 3.7016 -1.5309 -0.8416 37 1 2.2484 -2.5585 -0.8410 38 1 5.8540 -2.4370 -0.3299 39 1 3.7790 -6.8681 0.2668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610872977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:59 Heat of formation + Delta-G solvation = -149.106411 kcal Electronic energy + Delta-G solvation = -26578.818136 eV Core-core repulsion = 22265.054320 eV Total energy + Delta-G solvation = -4313.763816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.63102 -49.08754 -48.69893 -39.72258 -38.50385 -36.01167 -33.10008 -32.55581 -30.89074 -30.55790 -28.43544 -26.84044 -26.46012 -23.67964 -23.11803 -22.05009 -21.23136 -18.52618 -18.18844 -18.03496 -17.29905 -16.93834 -16.47865 -16.44538 -15.88214 -15.50259 -15.13583 -15.08714 -14.93622 -14.52151 -14.48913 -14.27265 -13.96936 -13.54345 -13.35940 -13.10802 -12.70521 -12.38296 -12.34180 -11.86715 -11.75116 -11.66096 -11.58177 -11.52220 -11.18064 -10.95899 -10.88102 -10.58990 -10.41983 -10.05022 -9.57652 -9.37602 -9.00521 -8.61242 -8.43600 -7.70805 -6.05215 -4.08670 0.59791 0.68285 2.94500 3.28006 3.30545 3.36176 3.40279 3.48911 3.80533 3.89261 4.23135 4.24626 4.37528 4.44133 4.77335 5.01091 5.19024 5.21332 5.29494 5.33663 5.37379 5.51353 5.53056 5.58782 5.60978 5.78686 5.92603 5.97227 6.11385 6.22030 6.32420 6.50069 6.55821 6.91631 7.06831 7.44614 7.51892 7.91164 8.22877 8.37183 8.87557 9.03030 9.55490 11.02990 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.004065 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.761517 B = 6886.546445 C = 7803.846544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.157 4.157 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.508 3.492 15 O -0.534 6.534 16 C -0.108 4.108 17 C -0.068 4.068 18 C -0.084 4.084 19 C 0.061 3.939 20 F -0.126 7.126 21 C 0.092 3.908 22 F -0.124 7.124 23 C -0.163 4.163 24 C 0.137 3.863 25 F -0.122 7.122 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -8.620 -15.812 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.215 4.215 4 N -0.322 5.322 5 C 0.127 3.873 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.293 3.707 15 O -0.411 6.411 16 C -0.148 4.148 17 C -0.070 4.070 18 C -0.103 4.103 19 C 0.040 3.960 20 F -0.104 7.104 21 C 0.072 3.928 22 F -0.102 7.102 23 C -0.182 4.182 24 C 0.118 3.882 25 F -0.100 7.100 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.174 0.826 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.532 -8.906 -15.074 17.690 hybrid contribution 0.820 0.568 0.488 1.110 sum 3.352 -8.338 -14.585 17.132 Atomic orbital electron populations 1.22162 0.95468 1.01890 1.02542 1.21033 0.94279 0.94217 0.87786 1.22145 1.01337 0.95628 1.02424 1.48316 1.48856 1.26178 1.08833 1.19257 0.95945 0.95005 0.77047 1.21414 1.08890 1.23420 1.02092 0.92377 1.24922 0.95740 0.97122 0.96345 1.69932 1.29533 1.43220 1.10713 0.86555 0.82004 0.81244 0.77965 1.20681 1.21172 1.19960 1.19966 0.79715 0.81324 0.89662 1.90709 1.53159 1.57961 1.39281 1.20775 1.00366 0.95066 0.98642 1.19328 0.93585 0.93571 1.00471 1.20800 0.92035 0.98310 0.99163 1.17520 0.78084 0.92968 1.07389 1.91540 1.28169 1.96622 1.94078 1.17172 0.88456 0.82030 1.05181 1.91545 1.74201 1.51085 1.93382 1.20850 0.91265 1.00302 1.05818 1.17031 0.77608 0.92855 1.00747 1.91545 1.28427 1.96662 1.93358 0.91240 0.92212 0.92841 0.90758 0.92727 0.93194 0.89994 0.94691 0.94053 0.92776 0.87397 0.87661 0.82584 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.17 37.16 0.34 -1.88 16 2 C 0.13 1.96 3.17 -67.93 -0.22 1.75 16 3 C -0.16 -2.40 8.47 37.16 0.31 -2.08 16 4 N -0.59 -11.64 2.39 -167.48 -0.40 -12.04 16 5 C 0.25 6.14 4.59 -5.19 -0.02 6.11 16 6 C -0.52 -14.00 7.83 -34.44 -0.27 -14.27 16 7 H 0.06 1.56 7.63 -52.49 -0.40 1.16 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 10 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.51 9.86 7.67 -10.98 -0.08 9.78 16 15 O -0.53 -12.89 15.61 5.56 0.09 -12.80 16 16 C -0.11 -1.44 3.91 -29.03 -0.11 -1.55 16 17 C -0.07 -0.91 4.38 -104.55 -0.46 -1.37 16 18 C -0.08 -1.05 9.65 -39.53 -0.38 -1.43 16 19 C 0.06 0.78 7.31 -39.37 -0.29 0.50 16 20 F -0.13 -1.68 17.18 2.25 0.04 -1.64 16 21 C 0.09 1.15 7.31 -39.38 -0.29 0.86 16 22 F -0.12 -1.57 17.18 2.25 0.04 -1.53 16 23 C -0.16 -1.91 10.00 -39.46 -0.39 -2.30 16 24 C 0.14 1.83 7.24 -39.43 -0.29 1.54 16 25 F -0.12 -1.70 16.56 2.25 0.04 -1.66 16 26 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.87 5.77 -51.93 -0.30 0.57 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16 33 H 0.04 0.88 6.43 -51.93 -0.33 0.55 16 34 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 36 H 0.11 1.14 7.70 -51.93 -0.40 0.74 16 37 H 0.11 1.17 7.43 -51.93 -0.39 0.79 16 38 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -31.96 342.18 -6.15 -38.11 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.58 Total: -1.94 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.24 Total: -2.76 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.34 Total: -37.38 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.11 Total: -4.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.96 -6.15 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610872977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.992 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds