Wall clock time and date at job start Tue Mar 31 2020 10:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46833 * 2 1 4 4 N 1.46496 * 109.47143 * 120.00010 * 2 1 3 5 5 C 1.46502 * 119.99953 * 299.99992 * 4 2 1 6 6 C 1.50697 * 109.47202 * 270.00009 * 5 4 2 7 7 H 1.07999 * 120.00168 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00234 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99746 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00321 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47446 * 89.99856 * 10 8 6 12 12 H 1.48503 * 109.47333 * 209.99719 * 10 8 6 13 13 H 1.48499 * 109.47227 * 329.99950 * 10 8 6 14 14 C 1.34776 * 120.00007 * 120.00444 * 4 2 1 15 15 O 1.21283 * 120.00218 * 180.02562 * 14 4 2 16 16 C 1.50703 * 120.00077 * 359.97438 * 14 4 2 17 17 C 1.50697 * 109.46992 * 180.02562 * 16 14 4 18 18 C 1.38244 * 119.97664 * 264.97395 * 17 16 14 19 19 C 1.38358 * 120.02445 * 179.74738 * 18 17 16 20 20 F 1.35101 * 120.01171 * 180.30523 * 19 18 17 21 21 C 1.38688 * 119.97835 * 0.57546 * 19 18 17 22 22 F 1.35104 * 120.02052 * 179.69753 * 21 19 18 23 23 C 1.38345 * 119.95689 * 359.42955 * 21 19 18 24 24 C 1.38419 * 119.97809 * 85.00442 * 17 16 14 25 25 F 1.35097 * 119.99101 * 359.97021 * 24 17 16 26 26 H 1.09000 * 109.47197 * 300.00122 * 1 2 3 27 27 H 1.09007 * 109.47497 * 60.00035 * 1 2 3 28 28 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46964 * 240.00290 * 2 1 3 30 30 H 1.08997 * 109.46744 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46855 * 299.99865 * 3 2 1 32 32 H 1.08995 * 109.47108 * 60.00378 * 3 2 1 33 33 H 1.08995 * 109.47215 * 30.00297 * 5 4 2 34 34 H 1.08997 * 109.47104 * 150.00151 * 5 4 2 35 35 H 0.97003 * 119.99786 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47204 * 60.00132 * 16 14 4 37 37 H 1.09005 * 109.47081 * 300.00605 * 16 14 4 38 38 H 1.08006 * 119.98880 * 0.04719 * 18 17 16 39 39 H 1.07997 * 120.01485 * 180.29410 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1901 2.5267 6 6 2.7031 0.8019 2.9830 7 1 3.5431 1.0357 2.3458 8 6 2.5816 1.4101 4.2143 9 7 1.5589 1.1249 4.9906 10 14 3.8687 2.6401 4.7796 11 1 3.4749 4.0042 4.3442 12 1 3.9715 2.6037 6.2606 13 1 5.1831 2.2905 4.1834 14 6 2.7932 -1.7863 1.0725 15 8 3.1971 -2.3584 2.0627 16 6 3.1569 -2.3015 -0.2963 17 6 4.0229 -3.5270 -0.1580 18 6 5.3996 -3.4081 -0.1993 19 6 6.1958 -4.5320 -0.0672 20 9 7.5413 -4.4147 -0.1014 21 6 5.6121 -5.7796 0.0948 22 9 6.3887 -6.8783 0.2178 23 6 4.2344 -5.8976 0.1360 24 6 3.4394 -4.7709 0.0097 25 9 2.0939 -4.8858 0.0500 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.6904 0.2973 2.4844 34 1 1.6238 -1.0226 3.2291 35 1 1.4733 1.5531 5.8568 36 1 3.7016 -1.5309 -0.8416 37 1 2.2484 -2.5585 -0.8410 38 1 5.8540 -2.4370 -0.3299 39 1 3.7790 -6.8681 0.2668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610872977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:58 Heat of formation + Delta-G solvation = -167.124385 kcal Electronic energy + Delta-G solvation = -26579.599454 eV Core-core repulsion = 22265.054320 eV Total energy + Delta-G solvation = -4314.545134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.63271 -50.12683 -49.70630 -41.07197 -39.65842 -37.50582 -34.96612 -33.83002 -32.38385 -31.55584 -29.97511 -28.15926 -27.82851 -25.04167 -24.50635 -23.30473 -22.51754 -19.75264 -19.37016 -19.04393 -18.56551 -18.37353 -18.25972 -17.50986 -17.04864 -16.71661 -16.55337 -16.18343 -16.11791 -16.04409 -15.66296 -15.40534 -15.06353 -14.80993 -14.73639 -14.48233 -14.04950 -13.88423 -13.47791 -13.31878 -13.17192 -12.90093 -12.81632 -12.75456 -12.66937 -12.56302 -12.39698 -12.17682 -12.06571 -11.61475 -11.48242 -10.69258 -10.58549 -10.19608 -9.66685 -9.39185 -8.17386 -6.28757 -0.41365 -0.26917 1.36929 1.39769 1.49027 1.84814 1.91851 2.35748 2.51278 2.52531 2.86556 3.13020 3.24032 3.26489 3.40186 3.75732 3.85483 4.05149 4.24514 4.35475 4.37573 4.41056 4.46735 4.58555 4.65227 4.79151 4.89656 4.92331 4.94693 5.06578 5.10899 5.17095 5.27523 5.48079 5.53145 5.63084 5.68337 5.91557 6.13707 6.76918 6.86493 7.34067 7.52075 8.89970 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.004065 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.761517 B = 6886.546445 C = 7803.846544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 C -0.153 4.153 4 N -0.595 5.595 5 C 0.264 3.736 6 C -0.521 4.521 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.498 3.502 15 O -0.593 6.593 16 C -0.095 4.095 17 C -0.080 4.080 18 C -0.082 4.082 19 C 0.051 3.949 20 F -0.130 7.130 21 C 0.088 3.912 22 F -0.126 7.126 23 C -0.156 4.156 24 C 0.125 3.875 25 F -0.128 7.128 26 H 0.035 0.965 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.024 0.976 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.175 0.825 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.070 -8.115 -18.510 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 C -0.211 4.211 4 N -0.326 5.326 5 C 0.143 3.857 6 C -0.560 4.560 7 H 0.076 0.924 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.190 1.190 12 H -0.213 1.213 13 H -0.197 1.197 14 C 0.286 3.714 15 O -0.474 6.474 16 C -0.134 4.134 17 C -0.082 4.082 18 C -0.100 4.100 19 C 0.031 3.969 20 F -0.109 7.109 21 C 0.068 3.932 22 F -0.104 7.104 23 C -0.175 4.175 24 C 0.106 3.894 25 F -0.106 7.106 26 H 0.054 0.946 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.192 0.808 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.203 -8.386 -17.830 19.963 hybrid contribution 0.582 0.357 1.304 1.472 sum 3.785 -8.029 -16.527 18.760 Atomic orbital electron populations 1.22137 0.94589 1.02193 1.02721 1.21483 0.95090 0.94176 0.87187 1.22091 1.00905 0.95743 1.02348 1.48343 1.49076 1.26835 1.08352 1.18628 0.95213 0.92554 0.79303 1.21668 1.08935 1.23278 1.02117 0.92440 1.25789 0.97729 0.99142 0.96641 1.70062 1.31441 1.44630 1.11138 0.85537 0.79330 0.79499 0.77195 1.18988 1.21287 1.19678 1.21053 0.78321 0.80345 0.91654 1.90678 1.55185 1.59539 1.41962 1.20773 1.02153 0.95837 0.94655 1.19429 0.93963 0.93644 1.01125 1.20991 0.91735 0.98958 0.98350 1.17678 0.77988 0.93410 1.07810 1.91527 1.28524 1.96669 1.94168 1.17276 0.88767 0.81929 1.05222 1.91541 1.74292 1.51157 1.93408 1.21030 0.90835 1.01037 1.04582 1.17239 0.77508 0.93497 1.01203 1.91529 1.28881 1.96723 1.93489 0.94586 0.88430 0.92511 0.85954 0.93307 0.89186 0.94094 0.95773 0.99217 0.92759 0.83677 0.84784 0.80771 0.80192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 9.17 71.98 0.66 -3.35 16 2 C 0.12 3.36 3.17 44.99 0.14 3.50 16 3 C -0.15 -4.31 8.47 71.98 0.61 -3.70 16 4 N -0.60 -23.33 2.39 -802.16 -1.91 -25.25 16 5 C 0.26 13.75 4.59 85.63 0.39 14.15 16 6 C -0.52 -28.82 7.83 25.60 0.20 -28.61 16 7 H 0.06 3.11 7.63 -2.91 -0.02 3.09 16 8 C 0.01 0.29 5.46 84.65 0.46 0.76 16 9 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 10 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 11 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 C 0.50 18.99 7.67 87.66 0.67 19.66 16 15 O -0.59 -29.28 15.61 -3.04 -0.05 -29.33 16 16 C -0.10 -2.22 3.91 29.10 0.11 -2.11 16 17 C -0.08 -1.98 4.38 -19.82 -0.09 -2.06 16 18 C -0.08 -1.88 9.65 22.30 0.22 -1.66 16 19 C 0.05 1.26 7.31 22.41 0.16 1.42 16 20 F -0.13 -3.34 17.18 44.97 0.77 -2.57 16 21 C 0.09 2.10 7.31 22.40 0.16 2.26 16 22 F -0.13 -3.04 17.18 44.97 0.77 -2.26 16 23 C -0.16 -3.41 10.00 22.35 0.22 -3.19 16 24 C 0.13 3.14 7.24 22.37 0.16 3.30 16 25 F -0.13 -3.39 16.56 44.97 0.74 -2.65 16 26 H 0.03 1.14 6.66 -2.39 -0.02 1.13 16 27 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.12 2.21 5.77 -2.39 -0.01 2.20 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.49 6.92 -2.39 -0.02 1.47 16 33 H 0.02 1.30 6.43 -2.39 -0.02 1.28 16 34 H -0.01 -0.64 7.42 -2.39 -0.02 -0.65 16 35 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.15 2.33 7.70 -2.39 -0.02 2.31 16 37 H 0.13 2.40 7.43 -2.38 -0.02 2.38 16 38 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -74.08 342.18 7.82 -66.26 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.09 Total: 4.81 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.10 Total: 0.35 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.63 Total: -81.17 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.05 Total: -29.33 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 2.29 Total: -7.48 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -74.08 7.82 -66.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610872977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.865 kcal (2) G-P(sol) polarization free energy of solvation -74.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds