Wall clock time and date at job start Tue Mar 31 2020 11:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46326 * 2 1 4 4 C 1.50700 * 109.47015 * 240.00486 * 2 1 3 5 5 O 1.21282 * 119.99732 * 239.99355 * 4 2 1 6 6 N 1.34770 * 120.00165 * 59.99556 * 4 2 1 7 7 C 1.46495 * 120.00170 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47417 * 180.02562 * 7 6 4 9 9 C 1.50707 * 109.47164 * 179.97438 * 8 7 6 10 10 H 1.07992 * 119.99859 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99680 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00487 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99812 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47386 * 90.00052 * 13 11 9 15 15 H 1.48497 * 109.47118 * 210.00267 * 13 11 9 16 16 H 1.48499 * 109.46743 * 329.99706 * 13 11 9 17 17 C 1.50696 * 109.47186 * 120.00152 * 2 1 3 18 18 C 1.38257 * 120.00351 * 60.23529 * 17 2 1 19 19 C 1.38208 * 119.99870 * 180.27237 * 18 17 2 20 20 C 1.38261 * 120.00416 * 359.74807 * 19 18 17 21 21 C 1.38213 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.38217 * 119.99893 * 239.99884 * 17 2 1 23 23 C 1.50703 * 119.99908 * 0.02562 * 22 17 2 24 24 F 1.39905 * 109.47157 * 179.72409 * 23 22 17 25 25 F 1.39900 * 109.47159 * 59.72710 * 23 22 17 26 26 F 1.39897 * 109.47274 * 299.72401 * 23 22 17 27 27 H 1.09000 * 109.46785 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47018 * 299.99235 * 1 2 3 29 29 H 1.08990 * 109.47242 * 60.00030 * 1 2 3 30 30 H 0.97005 * 120.00091 * 359.97438 * 6 4 2 31 31 H 1.09006 * 109.47481 * 300.00123 * 7 6 4 32 32 H 1.09010 * 109.47362 * 59.99891 * 7 6 4 33 33 H 1.09005 * 109.46976 * 299.99657 * 8 7 6 34 34 H 1.09000 * 109.47377 * 60.00056 * 8 7 6 35 35 H 0.96998 * 120.00449 * 180.02562 * 12 11 9 36 36 H 1.07995 * 119.99773 * 359.97438 * 18 17 2 37 37 H 1.07999 * 119.99765 * 179.72298 * 19 18 17 38 38 H 1.07994 * 120.00177 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.99740 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6963 -1.1193 6 7 1.7067 -0.2498 -2.4545 7 6 2.1955 -0.9400 -3.6507 8 6 1.6858 -0.2184 -4.9000 9 6 2.1892 -0.9281 -6.1305 10 1 2.8101 -1.8062 -6.0314 11 6 1.8561 -0.4570 -7.3827 12 7 1.0996 0.6120 -7.5033 13 14 2.4794 -1.3370 -8.9080 14 1 1.5018 -2.3790 -9.3126 15 1 2.6442 -0.3576 -10.0120 16 1 3.7878 -1.9739 -8.6120 17 6 2.0324 -0.7104 1.2304 18 6 1.7025 -2.0355 1.4468 19 6 2.1586 -2.6853 2.5781 20 6 2.9491 -2.0119 3.4909 21 6 3.2837 -0.6889 3.2717 22 6 2.8271 -0.0387 2.1402 23 6 3.1906 1.4043 1.9020 24 9 3.9899 1.8637 2.9543 25 9 2.0243 2.1736 1.8321 26 9 3.8953 1.5151 0.6985 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.1487 0.5386 -2.5435 31 1 3.2855 -0.9396 -3.6507 32 1 1.8326 -1.9679 -3.6510 33 1 0.5958 -0.2186 -4.9003 34 1 2.0491 0.8093 -4.8996 35 1 0.8650 0.9433 -8.3843 36 1 1.0844 -2.5613 0.7342 37 1 1.8971 -3.7191 2.7493 38 1 3.3051 -2.5196 4.3750 39 1 3.9008 -0.1627 3.9848 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612061039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:02 Heat of formation + Delta-G solvation = -177.735388 kcal Electronic energy + Delta-G solvation = -26437.226001 eV Core-core repulsion = 22122.220740 eV Total energy + Delta-G solvation = -4315.005261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.36824 -47.87794 -47.74518 -40.38475 -38.78496 -34.94410 -34.37327 -32.83676 -32.17310 -30.25978 -29.15568 -26.16827 -25.35543 -24.41203 -22.56409 -21.94331 -20.92950 -19.81332 -18.66605 -18.61355 -18.42346 -16.87219 -16.53257 -16.22059 -15.43442 -15.26252 -14.98078 -14.67823 -14.66327 -14.50314 -14.46527 -14.20546 -13.95150 -13.91841 -13.77873 -13.48637 -13.31486 -12.89719 -12.83906 -12.36205 -12.29611 -12.25293 -11.84705 -11.34127 -11.21914 -11.12642 -11.03023 -10.64940 -10.34422 -9.81290 -9.52773 -9.38452 -9.20501 -9.02628 -8.56687 -8.37422 -6.10370 -4.13345 0.72607 1.05437 2.49740 2.92220 3.23768 3.28742 3.35006 3.39093 3.52982 3.69032 3.84889 4.25476 4.27516 4.40669 4.54608 4.70797 4.90254 4.96088 5.02259 5.12963 5.19189 5.26729 5.44782 5.52058 5.62079 5.69738 5.90764 5.97341 6.14535 6.19360 6.31555 6.32730 6.55608 6.71435 6.87563 7.49912 7.60056 7.87406 7.95914 8.25974 8.58383 8.92560 9.51608 11.01197 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.003007 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.513021 B = 9310.162921 C = 9831.814256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.104 0.896 4 C 0.514 3.486 5 O -0.541 6.541 6 N -0.718 5.718 7 C 0.122 3.878 8 C 0.012 3.988 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.008 4.008 18 C -0.085 4.085 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.077 4.077 22 C -0.180 4.180 23 C 0.506 3.494 24 F -0.178 7.178 25 F -0.176 7.176 26 F -0.171 7.171 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.398 0.602 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -0.300 24.331 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.121 0.879 4 C 0.299 3.701 5 O -0.419 6.419 6 N -0.367 5.367 7 C 0.000 4.000 8 C -0.025 4.025 9 C -0.561 4.561 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.009 4.009 18 C -0.103 4.103 19 C -0.106 4.106 20 C -0.142 4.142 21 C -0.095 4.095 22 C -0.181 4.181 23 C 0.452 3.548 24 F -0.160 7.160 25 F -0.157 7.157 26 F -0.153 7.153 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.232 0.768 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.130 -0.853 24.227 24.242 hybrid contribution 0.183 0.323 -1.061 1.125 sum 0.052 -0.530 23.166 23.172 Atomic orbital electron populations 1.21787 0.91065 1.03359 1.03460 1.20613 0.98773 1.00696 0.91414 0.87854 1.20098 0.80789 0.84801 0.84441 1.90693 1.38029 1.26430 1.86714 1.46287 1.52611 1.31821 1.06027 1.21746 0.98602 0.96229 0.83421 1.19330 0.96941 0.96099 0.90140 1.21044 1.31984 1.12595 0.90439 0.92262 1.24992 0.95009 0.94998 0.99259 1.69950 1.36650 1.22894 1.23776 0.86514 0.79368 0.79347 0.82344 1.20557 1.21156 1.19720 1.19102 0.94224 0.94439 0.93098 1.20975 0.99496 0.92935 0.96897 1.21374 0.95733 1.00104 0.93417 1.21122 0.98998 0.93979 1.00114 1.20915 0.98015 0.95202 0.95418 1.19803 1.05965 0.92299 1.00082 1.18341 0.74653 0.87647 0.74179 1.93152 1.74629 1.90487 1.57692 1.93204 1.48606 1.77967 1.95917 1.93257 1.79252 1.96713 1.46047 0.91494 0.91133 0.90843 0.76828 0.92522 0.92492 0.95910 0.95898 0.92826 0.84871 0.85055 0.84974 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.91 37.16 0.33 -1.09 16 2 C -0.09 -1.21 2.28 -92.92 -0.21 -1.43 16 3 H 0.10 1.32 4.72 -51.93 -0.25 1.07 16 4 C 0.51 8.64 7.02 -10.99 -0.08 8.56 16 5 O -0.54 -10.84 15.09 5.56 0.08 -10.75 16 6 N -0.72 -12.45 5.45 -60.29 -0.33 -12.78 16 7 C 0.12 2.58 5.61 -4.04 -0.02 2.56 16 8 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 9 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 10 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 13 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.01 -0.10 4.36 -104.62 -0.46 -0.56 16 18 C -0.09 -0.99 7.92 -39.59 -0.31 -1.31 16 19 C -0.09 -0.83 10.05 -39.58 -0.40 -1.23 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.08 -0.76 9.43 -39.58 -0.37 -1.14 16 22 C -0.18 -2.15 5.37 -104.62 -0.56 -2.71 16 23 C 0.51 6.13 2.78 36.01 0.10 6.23 16 24 F -0.18 -2.01 15.97 2.25 0.04 -1.97 16 25 F -0.18 -2.05 15.80 2.25 0.04 -2.01 16 26 F -0.17 -2.41 15.85 2.25 0.04 -2.38 16 27 H 0.07 0.66 7.40 -51.93 -0.38 0.28 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 30 H 0.40 6.00 7.89 -40.82 -0.32 5.68 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.13 1.54 7.52 -52.49 -0.39 1.15 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.14 1.07 7.16 -52.49 -0.38 0.70 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -31.75 340.88 -6.83 -38.58 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.62 Total: 1.76 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.93 Total: -6.60 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.41 Total: -38.08 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.11 Total: -6.36 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.75 -6.83 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.155 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds