Wall clock time and date at job start Tue Mar 31 2020 11:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46326 * 2 1 4 4 C 1.50700 * 109.47015 * 240.00486 * 2 1 3 5 5 O 1.21282 * 119.99732 * 239.99355 * 4 2 1 6 6 N 1.34770 * 120.00165 * 59.99556 * 4 2 1 7 7 C 1.46495 * 120.00170 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47417 * 180.02562 * 7 6 4 9 9 C 1.50707 * 109.47164 * 179.97438 * 8 7 6 10 10 H 1.07992 * 119.99859 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99680 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00487 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99812 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47386 * 90.00052 * 13 11 9 15 15 H 1.48497 * 109.47118 * 210.00267 * 13 11 9 16 16 H 1.48499 * 109.46743 * 329.99706 * 13 11 9 17 17 C 1.50696 * 109.47186 * 120.00152 * 2 1 3 18 18 C 1.38257 * 120.00351 * 60.23529 * 17 2 1 19 19 C 1.38208 * 119.99870 * 180.27237 * 18 17 2 20 20 C 1.38261 * 120.00416 * 359.74807 * 19 18 17 21 21 C 1.38213 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.38217 * 119.99893 * 239.99884 * 17 2 1 23 23 C 1.50703 * 119.99908 * 0.02562 * 22 17 2 24 24 F 1.39905 * 109.47157 * 179.72409 * 23 22 17 25 25 F 1.39900 * 109.47159 * 59.72710 * 23 22 17 26 26 F 1.39897 * 109.47274 * 299.72401 * 23 22 17 27 27 H 1.09000 * 109.46785 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47018 * 299.99235 * 1 2 3 29 29 H 1.08990 * 109.47242 * 60.00030 * 1 2 3 30 30 H 0.97005 * 120.00091 * 359.97438 * 6 4 2 31 31 H 1.09006 * 109.47481 * 300.00123 * 7 6 4 32 32 H 1.09010 * 109.47362 * 59.99891 * 7 6 4 33 33 H 1.09005 * 109.46976 * 299.99657 * 8 7 6 34 34 H 1.09000 * 109.47377 * 60.00056 * 8 7 6 35 35 H 0.96998 * 120.00449 * 180.02562 * 12 11 9 36 36 H 1.07995 * 119.99773 * 359.97438 * 18 17 2 37 37 H 1.07999 * 119.99765 * 179.72298 * 19 18 17 38 38 H 1.07994 * 120.00177 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.99740 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6963 -1.1193 6 7 1.7067 -0.2498 -2.4545 7 6 2.1955 -0.9400 -3.6507 8 6 1.6858 -0.2184 -4.9000 9 6 2.1892 -0.9281 -6.1305 10 1 2.8101 -1.8062 -6.0314 11 6 1.8561 -0.4570 -7.3827 12 7 1.0996 0.6120 -7.5033 13 14 2.4794 -1.3370 -8.9080 14 1 1.5018 -2.3790 -9.3126 15 1 2.6442 -0.3576 -10.0120 16 1 3.7878 -1.9739 -8.6120 17 6 2.0324 -0.7104 1.2304 18 6 1.7025 -2.0355 1.4468 19 6 2.1586 -2.6853 2.5781 20 6 2.9491 -2.0119 3.4909 21 6 3.2837 -0.6889 3.2717 22 6 2.8271 -0.0387 2.1402 23 6 3.1906 1.4043 1.9020 24 9 3.9899 1.8637 2.9543 25 9 2.0243 2.1736 1.8321 26 9 3.8953 1.5151 0.6985 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.1487 0.5386 -2.5435 31 1 3.2855 -0.9396 -3.6507 32 1 1.8326 -1.9679 -3.6510 33 1 0.5958 -0.2186 -4.9003 34 1 2.0491 0.8093 -4.8996 35 1 0.8650 0.9433 -8.3843 36 1 1.0844 -2.5613 0.7342 37 1 1.8971 -3.7191 2.7493 38 1 3.3051 -2.5196 4.3750 39 1 3.9008 -0.1627 3.9848 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612061039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:01 Heat of formation + Delta-G solvation = -196.036036 kcal Electronic energy + Delta-G solvation = -26438.019576 eV Core-core repulsion = 22122.220740 eV Total energy + Delta-G solvation = -4315.798837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.31670 -48.80555 -48.72514 -41.46702 -39.90119 -36.63655 -35.41228 -34.77046 -32.98394 -31.72494 -30.40969 -27.03648 -26.99911 -25.63884 -23.66397 -23.03713 -22.53156 -21.07182 -19.60791 -19.57700 -19.30900 -18.57969 -18.01254 -17.34227 -16.70796 -16.50121 -16.30949 -16.10403 -15.65610 -15.61908 -15.55045 -15.16842 -15.01012 -14.89600 -14.86615 -14.70312 -14.57649 -14.30551 -13.89688 -13.65435 -13.30450 -13.24848 -13.13109 -12.94215 -12.72222 -12.54253 -12.26826 -12.11700 -11.98634 -11.66407 -11.46410 -10.81654 -10.61229 -10.18354 -10.04133 -9.86379 -8.24763 -6.35404 -0.07827 0.26886 1.41313 1.41897 1.53308 1.56895 1.58856 2.16944 2.41981 2.57590 2.66035 2.94373 3.10009 3.32886 3.34665 3.59640 3.88659 3.99323 4.06838 4.16062 4.38019 4.41269 4.47072 4.47824 4.65824 4.74353 4.78626 4.83758 4.92525 5.12725 5.21246 5.26387 5.36147 5.42585 5.47419 5.56906 5.77493 5.82168 6.15002 6.55855 6.77730 7.20018 7.34017 8.87053 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.003007 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.513021 B = 9310.162921 C = 9831.814256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 H 0.104 0.896 4 C 0.515 3.485 5 O -0.574 6.574 6 N -0.715 5.715 7 C 0.142 3.858 8 C 0.023 3.977 9 C -0.547 4.547 10 H 0.058 0.942 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.965 3.035 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.267 1.267 17 C -0.031 4.031 18 C -0.103 4.103 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.080 4.080 22 C -0.196 4.196 23 C 0.505 3.495 24 F -0.173 7.173 25 F -0.174 7.174 26 F -0.187 7.187 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.409 0.591 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.011 0.989 34 H 0.006 0.994 35 H 0.266 0.734 36 H 0.126 0.874 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -1.168 25.768 25.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.122 0.878 4 C 0.301 3.699 5 O -0.453 6.453 6 N -0.366 5.366 7 C 0.018 3.982 8 C -0.015 4.015 9 C -0.586 4.586 10 H 0.077 0.923 11 C -0.191 4.191 12 N -0.566 5.566 13 Si 0.789 3.211 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.032 4.032 18 C -0.121 4.121 19 C -0.105 4.105 20 C -0.133 4.133 21 C -0.098 4.098 22 C -0.197 4.197 23 C 0.451 3.549 24 F -0.155 7.155 25 F -0.156 7.156 26 F -0.169 7.169 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.245 0.755 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.176 0.824 38 H 0.186 0.814 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.030 -1.703 25.687 25.743 hybrid contribution 0.162 0.588 -1.418 1.544 sum 0.132 -1.116 24.269 24.295 Atomic orbital electron populations 1.21824 0.89018 1.03921 1.04626 1.20554 1.00409 0.99986 0.89570 0.87780 1.20777 0.79766 0.84325 0.85007 1.90665 1.39409 1.28031 1.87227 1.46120 1.52932 1.32121 1.05403 1.21232 0.97531 0.95713 0.83677 1.19137 0.95983 0.95256 0.91111 1.21461 1.32260 1.12953 0.91895 0.92328 1.25866 0.95073 0.95705 1.02485 1.70054 1.37600 1.24170 1.24741 0.85449 0.79017 0.78313 0.78301 1.19620 1.20558 1.19127 1.19148 0.95595 0.95144 0.93278 1.21083 1.00232 0.92803 0.97949 1.21735 0.94961 1.01309 0.92472 1.21555 0.97607 0.93401 1.00755 1.21259 0.97716 0.95906 0.94939 1.19901 1.06627 0.92097 1.01069 1.18440 0.74567 0.88135 0.73719 1.93154 1.74528 1.90487 1.57292 1.93199 1.48468 1.78024 1.95884 1.93223 1.79672 1.96823 1.47161 0.91259 0.89284 0.90337 0.75476 0.93882 0.93117 0.97051 0.97534 0.92523 0.85578 0.82418 0.81436 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.91 71.98 0.64 -2.02 16 2 C -0.08 -2.16 2.28 -12.28 -0.03 -2.18 16 3 H 0.10 2.64 4.72 -2.38 -0.01 2.63 16 4 C 0.51 17.48 7.02 87.66 0.62 18.09 16 5 O -0.57 -23.34 15.09 -3.04 -0.05 -23.39 16 6 N -0.72 -25.21 5.45 -463.06 -2.52 -27.73 16 7 C 0.14 6.15 5.61 86.38 0.48 6.64 16 8 C 0.02 1.14 5.09 29.85 0.15 1.30 16 9 C -0.55 -30.69 9.11 25.60 0.23 -30.46 16 10 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 11 C 0.01 0.42 5.46 84.65 0.46 0.89 16 12 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 13 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 C -0.03 -0.77 4.36 -19.87 -0.09 -0.85 16 18 C -0.10 -2.30 7.92 22.27 0.18 -2.13 16 19 C -0.09 -1.43 10.05 22.27 0.22 -1.21 16 20 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 21 C -0.08 -1.40 9.43 22.27 0.21 -1.19 16 22 C -0.20 -4.45 5.37 -19.86 -0.11 -4.56 16 23 C 0.51 11.92 2.78 71.24 0.20 12.12 16 24 F -0.17 -3.71 15.97 44.97 0.72 -2.99 16 25 F -0.17 -3.95 15.80 44.97 0.71 -3.24 16 26 F -0.19 -5.30 15.85 44.97 0.71 -4.58 16 27 H 0.07 1.32 7.40 -2.39 -0.02 1.30 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.43 7.56 -2.39 -0.02 1.41 16 30 H 0.41 12.50 7.89 -92.70 -0.73 11.76 16 31 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.13 2.91 7.52 -2.91 -0.02 2.88 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.16 2.02 7.16 -2.91 -0.02 2.00 16 Total: -1.00 -68.44 340.88 5.65 -62.79 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.36 Total: 14.50 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 3.40 Total: -6.97 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.24 Total: -81.84 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 9 Polarization: -12.95 SS G_CDS: 2.14 Total: -10.81 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.44 5.65 -62.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.243 kcal (2) G-P(sol) polarization free energy of solvation -68.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds