Wall clock time and date at job start Tue Mar 31 2020 11:34:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86800 * 120.00171 * 2 1
4 4 H 1.48502 * 109.47025 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.46829 * 299.99984 * 3 2 1
6 6 H 1.48495 * 109.47343 * 59.99930 * 3 2 1
7 7 C 1.37882 * 119.99837 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99818 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99839 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.46719 * 180.02562 * 9 7 2
11 11 C 1.53006 * 109.47038 * 180.02562 * 10 9 7
12 12 S 1.81398 * 109.47370 * 179.97438 * 11 10 9
13 13 O 1.42102 * 110.53935 * 65.78932 * 12 11 10
14 14 O 1.42097 * 110.54367 * 289.04159 * 12 11 10
15 15 N 1.65592 * 104.45069 * 177.41153 * 12 11 10
16 16 C 1.47059 * 120.57943 * 101.54703 * 15 12 11
17 17 C 1.53332 * 108.83608 * 235.02174 * 16 15 12
18 18 C 1.51253 * 108.80733 * 308.89202 * 17 16 15
19 19 O 1.20758 * 120.86225 * 234.53584 * 18 17 16
20 20 C 1.51502 * 118.27439 * 54.55102 * 18 17 16
21 21 C 1.46446 * 120.58158 * 281.57659 * 15 12 11
22 22 C 1.53242 * 113.74985 * 355.97829 * 21 15 12
23 23 C 1.53879 * 86.93390 * 270.21983 * 22 21 15
24 24 C 1.53266 * 113.71210 * 257.72047 * 21 15 12
25 25 H 0.97008 * 119.99439 * 0.02562 * 1 2 3
26 26 H 1.08994 * 109.47152 * 59.99741 * 9 7 2
27 27 H 1.08997 * 109.46878 * 299.99907 * 9 7 2
28 28 H 1.08994 * 109.47556 * 59.99945 * 10 9 7
29 29 H 1.08997 * 109.47333 * 299.99584 * 10 9 7
30 30 H 1.08994 * 109.47094 * 59.99536 * 11 10 9
31 31 H 1.09005 * 109.46787 * 299.99674 * 11 10 9
32 32 H 1.08997 * 109.57022 * 354.82961 * 16 15 12
33 33 H 1.09000 * 109.57294 * 115.08132 * 16 15 12
34 34 H 1.09000 * 109.57899 * 68.69018 * 17 16 15
35 35 H 1.09001 * 109.58062 * 189.09383 * 17 16 15
36 36 H 1.09004 * 109.74676 * 189.64047 * 20 18 17
37 37 H 1.08993 * 109.75117 * 68.90504 * 20 18 17
38 38 H 1.08995 * 113.63730 * 24.72981 * 22 21 15
39 39 H 1.08999 * 113.63579 * 155.71224 * 22 21 15
40 40 H 1.08997 * 113.60103 * 220.38110 * 23 22 21
41 41 H 1.09006 * 113.59705 * 89.52682 * 23 22 21
42 42 H 1.08994 * 113.63711 * 204.32376 * 24 21 15
43 43 H 1.08998 * 113.64024 * 335.22116 * 24 21 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8905 2.3964 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0018
11 6 1.4801 -4.9871 0.0012
12 16 2.6588 -6.3659 0.0019
13 8 3.3967 -6.3904 1.2161
14 8 3.3137 -6.4628 -1.2554
15 7 1.7097 -7.7210 0.0736
16 6 1.4467 -8.5149 -1.1360
17 6 -0.0697 -8.6457 -1.3223
18 6 -0.6800 -9.1328 -0.0269
19 8 -1.3755 -10.1196 -0.0023
20 6 -0.3962 -8.3502 1.2389
21 6 1.1170 -8.1492 1.3424
22 6 1.5436 -7.2964 2.5419
23 6 2.7178 -8.2757 2.7154
24 6 1.8492 -9.3246 1.9991
25 1 -0.4850 0.8402 -0.0004
26 1 0.6246 -2.5571 -0.8896
27 1 0.6239 -2.5567 0.8903
28 1 2.8711 -3.6040 0.8922
29 1 2.8724 -3.6048 -0.8877
30 1 0.8544 -5.0450 -0.8894
31 1 0.8525 -5.0447 0.8906
32 1 1.8794 -8.0147 -2.0023
33 1 1.8899 -9.5047 -1.0266
34 1 -0.4908 -7.6745 -1.5822
35 1 -0.2797 -9.3616 -2.1170
36 1 -0.7537 -8.9078 2.1046
37 1 -0.8940 -7.3817 1.1926
38 1 1.8529 -6.2866 2.2723
39 1 0.8323 -7.3164 3.3675
40 1 2.9306 -8.5220 3.7556
41 1 3.6092 -7.9916 2.1560
42 1 1.2227 -9.9078 2.6739
43 1 2.4026 -9.9441 1.2934
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000632466816.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:34:08
Heat of formation + Delta-G solvation = -81.433665 kcal
Electronic energy + Delta-G solvation = -25707.529630 eV
Core-core repulsion = 22074.001017 eV
Total energy + Delta-G solvation = -3633.528613 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.134 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.89823 -38.99035 -37.19375 -35.90826 -35.11682 -34.75227 -32.25461 -31.04288
-30.19545 -27.93737 -26.07149 -24.10715 -23.71897 -23.58163 -20.86798 -20.12724
-19.77379 -18.28520 -17.52070 -16.91638 -16.56312 -15.92743 -15.82881 -15.52381
-15.40925 -15.17401 -14.64817 -14.52637 -14.47958 -14.05112 -13.70844 -12.95549
-12.73674 -12.56380 -12.46208 -12.41324 -12.24578 -12.11276 -11.96455 -11.87080
-11.60419 -11.36273 -11.10282 -10.98904 -10.96653 -10.87310 -10.61130 -10.46865
-10.26675 -10.01963 -9.66404 -9.58124 -9.29478 -9.04269 -8.45541 -6.10256
-4.13420 0.26852 1.66434 2.47174 3.26411 3.34308 3.38801 3.71092
3.83605 4.00097 4.08193 4.33294 4.37605 4.39699 4.55309 4.67464
4.79571 4.80547 4.96782 5.01940 5.10661 5.22989 5.26536 5.31376
5.37047 5.47733 5.50688 5.62503 5.65348 5.65554 5.78890 5.93029
5.97413 6.06480 6.16709 6.25776 6.37065 6.62813 6.79839 7.19387
7.51400 7.60518 7.87578 8.27634 8.93014 9.51784 11.00922
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.019551 B = 0.003609 C = 0.003459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1431.804138 B = 7755.928616 C = 8093.768528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.058 3.942
3 Si 0.893 3.107
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.526 4.526
8 H 0.059 0.941
9 C 0.031 3.969
10 C -0.105 4.105
11 C -0.610 4.610
12 S 2.591 3.409
13 O -0.943 6.943
14 O -0.959 6.959
15 N -0.985 5.985
16 C 0.127 3.873
17 C -0.188 4.188
18 C 0.369 3.631
19 O -0.459 6.459
20 C -0.168 4.168
21 C 0.161 3.839
22 C -0.157 4.157
23 C -0.134 4.134
24 C -0.149 4.149
25 H 0.261 0.739
26 H 0.020 0.980
27 H 0.021 0.979
28 H 0.067 0.933
29 H 0.064 0.936
30 H 0.128 0.872
31 H 0.129 0.871
32 H 0.111 0.889
33 H 0.077 0.923
34 H 0.106 0.894
35 H 0.101 0.899
36 H 0.102 0.898
37 H 0.109 0.891
38 H 0.093 0.907
39 H 0.097 0.903
40 H 0.065 0.935
41 H 0.116 0.884
42 H 0.089 0.911
43 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.301 -19.301 1.820 19.389
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.143 4.143
3 Si 0.721 3.279
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.209 1.209
7 C -0.565 4.565
8 H 0.077 0.923
9 C -0.007 4.007
10 C -0.144 4.144
11 C -0.742 4.742
12 S 2.690 3.310
13 O -0.933 6.933
14 O -0.949 6.949
15 N -0.819 5.819
16 C 0.001 3.999
17 C -0.228 4.228
18 C 0.244 3.756
19 O -0.332 6.332
20 C -0.208 4.208
21 C 0.072 3.928
22 C -0.195 4.195
23 C -0.172 4.172
24 C -0.188 4.188
25 H 0.071 0.929
26 H 0.039 0.961
27 H 0.039 0.961
28 H 0.086 0.914
29 H 0.083 0.917
30 H 0.146 0.854
31 H 0.147 0.853
32 H 0.130 0.870
33 H 0.095 0.905
34 H 0.124 0.876
35 H 0.119 0.881
36 H 0.120 0.880
37 H 0.127 0.873
38 H 0.111 0.889
39 H 0.116 0.884
40 H 0.084 0.916
41 H 0.134 0.866
42 H 0.107 0.893
43 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 0.764 -19.744 1.766 19.837
hybrid contribution -0.485 1.259 -0.049 1.350
sum 0.278 -18.485 1.716 18.567
Atomic orbital electron populations
1.69964 1.06101 1.26714 1.50593 1.25014 0.94876 0.99385 0.95045
0.86509 0.80208 0.83511 0.77659 1.19578 1.20921 1.20918 1.21280
0.93284 0.90849 1.51071 0.92314 1.19062 0.93500 0.90438 0.97741
1.21505 0.99380 0.91560 1.01974 1.30647 1.16371 1.15790 1.11343
1.05753 0.76028 0.74918 0.74259 1.93568 1.69226 1.85196 1.45351
1.93546 1.71998 1.85568 1.43835 1.57696 1.68809 1.42612 1.12830
1.21398 0.93509 0.97444 0.87503 1.22719 0.97472 1.04920 0.97647
1.24702 0.75947 0.82931 0.92016 1.90413 1.30506 1.23802 1.88485
1.22646 0.96682 1.03108 0.98322 1.20893 0.90145 0.98603 0.83170
1.23652 0.99026 1.00531 0.96288 1.23171 0.98700 0.94072 1.01236
1.23346 0.99326 0.96397 0.99780 0.92924 0.96140 0.96092 0.91423
0.91715 0.85388 0.85294 0.87046 0.90461 0.87585 0.88085 0.87955
0.87313 0.88884 0.88447 0.91584 0.86633 0.89260 0.90970
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16
4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
7 C -0.53 -14.42 9.11 -34.44 -0.31 -14.74 16
8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16
9 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16
10 C -0.10 -1.99 5.16 -26.73 -0.14 -2.13 16
11 C -0.61 -8.57 5.92 37.16 0.22 -8.35 16
12 S 2.59 34.50 4.86 -107.50 -0.52 33.98 16
13 O -0.94 -14.01 11.51 -57.54 -0.66 -14.67 16
14 O -0.96 -15.30 16.37 -57.54 -0.94 -16.24 16
15 N -0.98 -10.11 2.98 -99.69 -0.30 -10.41 16
16 C 0.13 1.10 6.41 -3.57 -0.02 1.08 16
17 C -0.19 -1.48 6.29 -27.44 -0.17 -1.65 16
18 C 0.37 3.60 6.69 -28.37 -0.19 3.41 16
19 O -0.46 -5.94 17.89 6.00 0.11 -5.83 16
20 C -0.17 -1.41 5.54 -27.49 -0.15 -1.56 16
21 C 0.16 1.52 1.07 -131.59 -0.14 1.38 16
22 C -0.16 -1.59 6.66 -26.15 -0.17 -1.77 16
23 C -0.13 -1.42 7.37 -25.82 -0.19 -1.61 16
24 C -0.15 -1.35 7.42 -26.13 -0.19 -1.55 16
25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16
30 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16
31 H 0.13 1.58 7.34 -51.92 -0.38 1.20 16
32 H 0.11 0.96 6.74 -51.93 -0.35 0.61 16
33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16
34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16
36 H 0.10 0.78 7.89 -51.93 -0.41 0.37 16
37 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.09 1.08 4.21 -51.93 -0.22 0.86 16
39 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16
40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
41 H 0.12 1.47 5.61 -51.93 -0.29 1.17 16
42 H 0.09 0.69 7.92 -51.93 -0.41 0.28 16
43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
LS Contribution 349.22 15.07 5.26 5.26
Total: -1.00 -33.66 349.22 -9.72 -43.38
By element:
Atomic # 1 Polarization: 5.70 SS G_CDS: -6.67 Total: -0.98 kcal
Atomic # 6 Polarization: -23.64 SS G_CDS: -1.70 Total: -25.35 kcal
Atomic # 7 Polarization: -36.11 SS G_CDS: 0.44 Total: -35.67 kcal
Atomic # 8 Polarization: -35.25 SS G_CDS: -1.50 Total: -36.75 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: 34.50 SS G_CDS: -0.52 Total: 33.98 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -33.66 -9.72 -43.38 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000632466816.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.058 kcal
(2) G-P(sol) polarization free energy of solvation -33.660 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.718 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds