Wall clock time and date at job start Tue Mar 31 2020 11:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29891 * 120.00331 * 2 1 4 4 N 1.40092 * 119.99738 * 0.02562 * 3 2 1 5 5 C 1.39049 * 120.00184 * 180.02562 * 4 3 2 6 6 N 1.32445 * 119.72225 * 0.26499 * 5 4 3 7 7 C 1.31923 * 121.64575 * 180.31201 * 6 5 4 8 8 C 1.38084 * 120.90916 * 359.68236 * 7 6 5 9 9 C 1.38862 * 119.35064 * 0.02562 * 8 7 6 10 10 C 1.38502 * 118.48577 * 0.02562 * 9 8 7 11 11 F 1.35103 * 120.47098 * 179.97438 * 10 9 8 12 12 C 1.47337 * 119.99972 * 179.97438 * 2 1 3 13 13 C 1.39829 * 120.08572 * 359.72780 * 12 2 1 14 14 C 1.37722 * 119.90659 * 179.76147 * 13 12 2 15 15 C 1.39076 * 120.09002 * 0.48864 * 14 13 12 16 16 O 1.35664 * 119.91453 * 179.74463 * 15 14 13 17 17 C 1.34807 * 117.00396 * 174.47225 * 16 15 14 18 18 H 1.08000 * 119.99908 * 5.05194 * 17 16 15 19 19 C 1.38608 * 120.00195 * 185.05545 * 17 16 15 20 20 N 1.31582 * 120.00546 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99948 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47301 * 89.99747 * 21 19 17 23 23 H 1.48497 * 109.47333 * 210.00117 * 21 19 17 24 24 H 1.48510 * 109.47018 * 330.00119 * 21 19 17 25 25 C 1.39078 * 120.17972 * 359.76508 * 15 14 13 26 26 C 1.37725 * 120.08842 * 0.02562 * 25 15 14 27 27 H 1.08991 * 109.47140 * 89.99529 * 1 2 3 28 28 H 1.08997 * 109.47107 * 210.00518 * 1 2 3 29 29 H 1.09006 * 109.46997 * 330.00011 * 1 2 3 30 30 H 0.97006 * 120.00610 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.55075 * 179.69841 * 7 6 5 32 32 H 1.07999 * 120.32612 * 179.97438 * 8 7 6 33 33 H 1.08000 * 120.75145 * 180.02562 * 9 8 7 34 34 H 1.07993 * 120.04500 * 359.97438 * 13 12 2 35 35 H 1.07994 * 119.95435 * 180.21264 * 14 13 12 36 36 H 0.96998 * 120.00404 * 180.02562 * 20 19 17 37 37 H 1.07999 * 119.95920 * 179.97438 * 25 15 14 38 38 H 1.07995 * 120.04205 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1565 1.1248 0.0000 4 7 1.4561 2.3381 0.0005 5 6 2.1513 3.5423 0.0000 6 7 3.4757 3.5359 -0.0063 7 6 4.1733 4.6556 -0.0010 8 6 3.5428 5.8841 0.0050 9 6 2.1552 5.9370 0.0059 10 6 1.4487 4.7457 0.0012 11 9 0.0977 4.7504 0.0024 12 6 2.2437 -1.2760 0.0006 13 6 1.5463 -2.4880 0.0069 14 6 2.2386 -3.6785 0.0024 15 6 3.6294 -3.6764 0.0019 16 8 4.3078 -4.8513 0.0028 17 6 5.6491 -4.7837 -0.1135 18 1 6.1428 -3.8231 -0.1196 19 6 6.3946 -5.9468 -0.2251 20 7 7.7039 -5.8809 -0.3381 21 14 5.5407 -7.6082 -0.2138 22 1 5.1903 -7.9942 -1.6043 23 1 6.4493 -8.6279 0.3689 24 1 4.3033 -7.5232 0.6030 25 6 4.3267 -2.4731 0.0010 26 6 3.6419 -1.2782 0.0011 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 0.4860 2.3382 0.0005 31 1 5.2524 4.6109 -0.0015 32 1 4.1232 6.7949 0.0098 33 1 1.6387 6.8855 0.0101 34 1 0.4664 -2.4904 0.0117 35 1 1.7008 -4.6150 0.0038 36 1 8.2256 -6.6949 -0.4166 37 1 5.4067 -2.4756 0.0011 38 1 4.1841 -0.3442 0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794984364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:21 Heat of formation + Delta-G solvation = 42.633772 kcal Electronic energy + Delta-G solvation = -24037.697138 eV Core-core repulsion = 20182.936987 eV Total energy + Delta-G solvation = -3854.760151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.14754 -40.21482 -39.33233 -37.93543 -36.39926 -33.74475 -32.48029 -32.23894 -30.62040 -30.12256 -28.30367 -27.99179 -25.44871 -23.92706 -23.22654 -22.05808 -21.74485 -19.56607 -18.53701 -17.92810 -17.54884 -17.27619 -17.09573 -16.19122 -16.12909 -15.34622 -14.89164 -14.49286 -14.39411 -14.12594 -14.05343 -13.95839 -13.87068 -13.66886 -13.24973 -12.79585 -12.62681 -12.49721 -12.35178 -12.20441 -12.09632 -11.55286 -11.23620 -10.92891 -10.81358 -10.25132 -10.17342 -10.01601 -9.70132 -9.63627 -9.41842 -8.94945 -8.35941 -8.06950 -7.10620 -6.51489 -4.16416 0.74542 0.92864 1.55405 2.12158 2.42025 2.84725 3.17543 3.21000 3.34363 3.58125 3.81659 4.08746 4.15669 4.44446 4.48435 4.61771 4.72082 4.75113 4.83010 4.97468 5.02392 5.21442 5.34615 5.41347 5.54733 5.61566 5.70169 5.75853 5.80471 6.02541 6.15722 6.22286 6.30785 6.47115 6.75712 6.84709 6.99754 7.12943 7.24504 7.49808 7.70400 7.73260 7.93175 8.33728 8.82383 9.42615 10.55189 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.002481 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.831156 B =11283.135477 C =12439.214495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 N -0.245 5.245 4 N -0.569 5.569 5 C 0.404 3.596 6 N -0.482 5.482 7 C 0.140 3.860 8 C -0.209 4.209 9 C -0.067 4.067 10 C -0.026 4.026 11 F -0.139 7.139 12 C -0.150 4.150 13 C -0.047 4.047 14 C -0.197 4.197 15 C 0.173 3.827 16 O -0.207 6.207 17 C -0.390 4.390 18 H 0.111 0.889 19 C 0.065 3.935 20 N -0.871 5.871 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.258 1.258 25 C -0.230 4.230 26 C -0.024 4.024 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.394 0.606 31 H 0.165 0.835 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.282 0.718 37 H 0.137 0.863 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.076 19.164 0.593 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.030 4.030 3 N -0.052 5.052 4 N -0.292 5.292 5 C 0.167 3.833 6 N -0.197 5.197 7 C -0.019 4.019 8 C -0.231 4.231 9 C -0.093 4.093 10 C -0.053 4.053 11 F -0.118 7.118 12 C -0.154 4.154 13 C -0.067 4.067 14 C -0.217 4.217 15 C 0.119 3.881 16 O -0.110 6.110 17 C -0.465 4.465 18 H 0.128 0.872 19 C -0.140 4.140 20 N -0.508 5.508 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.182 1.182 25 C -0.249 4.249 26 C -0.044 4.044 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.236 0.764 31 H 0.182 0.818 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.623 18.409 0.586 21.779 hybrid contribution -2.003 0.011 -0.018 2.003 sum -13.625 18.420 0.569 22.918 Atomic orbital electron populations 1.21301 0.93178 1.03586 1.03431 1.23274 0.92957 0.91784 0.95023 1.75236 1.22383 0.89953 1.17585 1.45286 1.06471 1.00820 1.76577 1.17996 0.89043 0.83129 0.93165 1.67491 1.04187 1.31128 1.16930 1.22727 1.00507 0.86580 0.92056 1.21846 0.93805 0.99934 1.07560 1.21356 0.94758 0.96716 0.96489 1.17966 0.77598 0.93792 1.15983 1.91458 1.28208 1.97191 1.94947 1.17675 0.92759 0.88799 1.16131 1.20708 0.98443 0.90669 0.96889 1.20078 0.91236 0.98091 1.12287 1.19325 0.91253 0.85724 0.91822 1.83531 1.21976 1.27015 1.78484 1.20847 0.77131 0.97174 1.51335 0.87220 1.24510 0.94840 0.99282 0.95342 1.69654 1.04533 1.30364 1.46234 0.86169 0.79936 0.81457 0.79302 1.19733 1.20643 1.18240 1.21252 1.01360 0.91518 1.10746 1.21057 0.92703 0.97652 0.92983 0.89894 0.89255 0.92068 0.76441 0.81761 0.84062 0.83658 0.86239 0.86051 0.90812 0.84547 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.04 36.00 0.33 -1.28 16 2 C 0.16 2.31 7.10 -79.71 -0.57 1.75 16 3 N -0.24 -3.94 10.19 35.10 0.36 -3.59 16 4 N -0.57 -7.91 6.27 31.19 0.20 -7.72 16 5 C 0.40 5.52 7.60 -154.86 -1.18 4.35 16 6 N -0.48 -6.85 9.91 -12.36 -0.12 -6.97 16 7 C 0.14 1.43 11.17 -17.57 -0.20 1.23 16 8 C -0.21 -1.65 10.10 -39.41 -0.40 -2.04 16 9 C -0.07 -0.57 10.15 -39.25 -0.40 -0.97 16 10 C -0.03 -0.29 7.35 -39.07 -0.29 -0.58 16 11 F -0.14 -1.53 16.65 2.25 0.04 -1.50 16 12 C -0.15 -2.52 5.87 -105.01 -0.62 -3.14 16 13 C -0.05 -0.73 9.36 -39.18 -0.37 -1.10 16 14 C -0.20 -3.65 9.97 -39.46 -0.39 -4.04 16 15 C 0.17 3.84 6.65 -38.96 -0.26 3.58 16 16 O -0.21 -5.25 8.58 0.38 0.00 -5.25 16 17 C -0.39 -10.65 9.94 30.87 0.31 -10.34 16 18 H 0.11 3.07 5.42 -52.49 -0.28 2.79 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.87 -24.56 13.96 55.48 0.77 -23.78 16 21 Si 0.91 20.95 28.62 -169.99 -4.86 16.08 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 25 C -0.23 -4.89 9.15 -39.46 -0.36 -5.25 16 26 C -0.02 -0.45 9.57 -39.18 -0.37 -0.83 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.81 6.45 -51.93 -0.34 0.47 16 29 H 0.06 0.56 6.35 -51.93 -0.33 0.23 16 30 H 0.39 4.55 5.91 -182.60 -1.08 3.47 16 31 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.12 1.43 6.34 -52.49 -0.33 1.09 16 35 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 36 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.14 3.06 5.62 -52.49 -0.29 2.76 16 38 H 0.12 2.32 7.55 -52.49 -0.40 1.93 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -31.04 336.34 -7.71 -38.74 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.30 Total: 5.91 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -4.86 Total: -17.01 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 1.21 Total: -42.06 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.86 Total: 16.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.04 -7.71 -38.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794984364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.378 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds