Wall clock time and date at job start Tue Mar 31 2020 11:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29891 * 120.00331 * 2 1 4 4 N 1.40092 * 119.99738 * 0.02562 * 3 2 1 5 5 C 1.39049 * 120.00184 * 180.02562 * 4 3 2 6 6 N 1.32445 * 119.72225 * 0.26499 * 5 4 3 7 7 C 1.31923 * 121.64575 * 180.31201 * 6 5 4 8 8 C 1.38084 * 120.90916 * 359.68236 * 7 6 5 9 9 C 1.38862 * 119.35064 * 0.02562 * 8 7 6 10 10 C 1.38502 * 118.48577 * 0.02562 * 9 8 7 11 11 F 1.35103 * 120.47098 * 179.97438 * 10 9 8 12 12 C 1.47337 * 119.99972 * 179.97438 * 2 1 3 13 13 C 1.39829 * 120.08572 * 359.72780 * 12 2 1 14 14 C 1.37722 * 119.90659 * 179.76147 * 13 12 2 15 15 C 1.39076 * 120.09002 * 0.48864 * 14 13 12 16 16 O 1.35664 * 119.91453 * 179.74463 * 15 14 13 17 17 C 1.34807 * 117.00396 * 174.47225 * 16 15 14 18 18 H 1.08000 * 119.99908 * 5.05194 * 17 16 15 19 19 C 1.38608 * 120.00195 * 185.05545 * 17 16 15 20 20 N 1.31582 * 120.00546 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99948 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47301 * 89.99747 * 21 19 17 23 23 H 1.48497 * 109.47333 * 210.00117 * 21 19 17 24 24 H 1.48510 * 109.47018 * 330.00119 * 21 19 17 25 25 C 1.39078 * 120.17972 * 359.76508 * 15 14 13 26 26 C 1.37725 * 120.08842 * 0.02562 * 25 15 14 27 27 H 1.08991 * 109.47140 * 89.99529 * 1 2 3 28 28 H 1.08997 * 109.47107 * 210.00518 * 1 2 3 29 29 H 1.09006 * 109.46997 * 330.00011 * 1 2 3 30 30 H 0.97006 * 120.00610 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.55075 * 179.69841 * 7 6 5 32 32 H 1.07999 * 120.32612 * 179.97438 * 8 7 6 33 33 H 1.08000 * 120.75145 * 180.02562 * 9 8 7 34 34 H 1.07993 * 120.04500 * 359.97438 * 13 12 2 35 35 H 1.07994 * 119.95435 * 180.21264 * 14 13 12 36 36 H 0.96998 * 120.00404 * 180.02562 * 20 19 17 37 37 H 1.07999 * 119.95920 * 179.97438 * 25 15 14 38 38 H 1.07995 * 120.04205 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1565 1.1248 0.0000 4 7 1.4561 2.3381 0.0005 5 6 2.1513 3.5423 0.0000 6 7 3.4757 3.5359 -0.0063 7 6 4.1733 4.6556 -0.0010 8 6 3.5428 5.8841 0.0050 9 6 2.1552 5.9370 0.0059 10 6 1.4487 4.7457 0.0012 11 9 0.0977 4.7504 0.0024 12 6 2.2437 -1.2760 0.0006 13 6 1.5463 -2.4880 0.0069 14 6 2.2386 -3.6785 0.0024 15 6 3.6294 -3.6764 0.0019 16 8 4.3078 -4.8513 0.0028 17 6 5.6491 -4.7837 -0.1135 18 1 6.1428 -3.8231 -0.1196 19 6 6.3946 -5.9468 -0.2251 20 7 7.7039 -5.8809 -0.3381 21 14 5.5407 -7.6082 -0.2138 22 1 5.1903 -7.9942 -1.6043 23 1 6.4493 -8.6279 0.3689 24 1 4.3033 -7.5232 0.6030 25 6 4.3267 -2.4731 0.0010 26 6 3.6419 -1.2782 0.0011 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 0.4860 2.3382 0.0005 31 1 5.2524 4.6109 -0.0015 32 1 4.1232 6.7949 0.0098 33 1 1.6387 6.8855 0.0101 34 1 0.4664 -2.4904 0.0117 35 1 1.7008 -4.6150 0.0038 36 1 8.2256 -6.6949 -0.4166 37 1 5.4067 -2.4756 0.0011 38 1 4.1841 -0.3442 0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794984364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:21 Heat of formation + Delta-G solvation = 24.296651 kcal Electronic energy + Delta-G solvation = -24038.492295 eV Core-core repulsion = 20182.936987 eV Total energy + Delta-G solvation = -3855.555308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.98146 -41.09579 -40.91972 -39.25480 -37.79470 -34.86226 -34.36451 -33.09346 -32.07583 -31.30113 -29.54867 -28.99438 -27.30226 -24.83626 -24.18420 -23.56234 -23.13613 -20.81483 -19.73289 -19.53881 -19.02860 -18.32245 -18.04682 -17.26203 -16.98465 -16.70965 -16.04182 -15.79581 -15.70232 -15.62584 -15.49381 -15.37334 -14.83847 -14.59674 -14.40573 -14.22792 -14.09650 -13.95424 -13.36929 -13.18394 -13.14210 -13.02405 -12.67570 -12.58503 -12.44622 -11.93815 -11.41906 -11.16429 -10.99826 -10.87900 -10.59724 -10.50306 -9.87233 -9.30614 -8.51305 -8.44357 -6.24094 -0.19608 0.08337 0.37941 0.57693 1.33770 1.36103 1.44343 1.53484 1.59026 2.28372 2.73741 2.81005 2.98270 3.02442 3.16358 3.23314 3.58533 3.72385 3.94712 4.05395 4.10167 4.15404 4.21326 4.47695 4.49825 4.60847 4.68169 4.72909 4.80504 4.90551 4.97485 5.07123 5.19741 5.27021 5.34969 5.49178 5.59485 5.68073 5.76704 5.85416 5.96754 6.15816 6.81207 6.81913 7.33384 7.52500 8.60016 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.002481 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.831156 B =11283.135477 C =12439.214495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 N -0.270 5.270 4 N -0.569 5.569 5 C 0.370 3.630 6 N -0.527 5.527 7 C 0.122 3.878 8 C -0.185 4.185 9 C -0.061 4.061 10 C -0.031 4.031 11 F -0.139 7.139 12 C -0.127 4.127 13 C -0.029 4.029 14 C -0.189 4.189 15 C 0.139 3.861 16 O -0.233 6.233 17 C -0.402 4.402 18 H 0.080 0.920 19 C 0.010 3.990 20 N -0.921 5.921 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.243 4.243 26 C -0.037 4.037 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.403 0.597 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.146 0.854 36 H 0.286 0.714 37 H 0.108 0.892 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.912 21.477 0.648 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.044 4.044 3 N -0.076 5.076 4 N -0.295 5.295 5 C 0.135 3.865 6 N -0.242 5.242 7 C -0.035 4.035 8 C -0.207 4.207 9 C -0.088 4.088 10 C -0.058 4.058 11 F -0.118 7.118 12 C -0.131 4.131 13 C -0.049 4.049 14 C -0.208 4.208 15 C 0.088 3.912 16 O -0.139 6.139 17 C -0.479 4.479 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.561 5.561 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.181 1.181 25 C -0.263 4.263 26 C -0.057 4.057 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.247 0.753 31 H 0.201 0.799 32 H 0.200 0.800 33 H 0.198 0.802 34 H 0.193 0.807 35 H 0.163 0.837 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.489 20.797 0.643 25.939 hybrid contribution -0.995 -0.090 -0.026 0.999 sum -16.484 20.706 0.617 26.474 Atomic orbital electron populations 1.21378 0.89346 1.05251 1.05026 1.23336 0.95286 0.90269 0.95552 1.75066 1.24718 0.91359 1.16505 1.45188 1.06860 1.00099 1.77379 1.18296 0.89400 0.83706 0.95137 1.67414 1.05001 1.33552 1.18272 1.23226 1.01530 0.86754 0.92034 1.22282 0.93841 1.00407 1.04142 1.21841 0.95109 0.97072 0.94756 1.18126 0.77686 0.93889 1.16099 1.91454 1.28199 1.97199 1.94991 1.18074 0.91823 0.90974 1.12195 1.21228 1.00934 0.88668 0.94073 1.20501 0.89463 1.00369 1.10469 1.19875 0.92919 0.85070 0.93357 1.83485 1.20482 1.28201 1.81766 1.20717 0.78556 0.96406 1.52171 0.90258 1.25351 0.95451 1.02931 0.95132 1.69747 1.05938 1.31472 1.48991 0.85171 0.78806 0.76910 0.79567 1.18902 1.19339 1.18133 1.21168 1.00322 0.92801 1.11967 1.21072 0.94251 0.96400 0.94014 0.88134 0.87174 0.90871 0.75319 0.79902 0.80022 0.80196 0.80729 0.83671 0.90440 0.87408 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.04 71.24 0.64 -1.84 16 2 C 0.14 3.91 7.10 45.24 0.32 4.23 16 3 N -0.27 -8.48 10.19 -42.87 -0.44 -8.91 16 4 N -0.57 -15.22 6.27 -55.24 -0.35 -15.57 16 5 C 0.37 9.80 7.60 133.09 1.01 10.81 16 6 N -0.53 -14.79 9.91 -193.01 -1.91 -16.70 16 7 C 0.12 2.29 11.17 84.64 0.95 3.24 16 8 C -0.19 -2.25 10.10 22.38 0.23 -2.03 16 9 C -0.06 -0.84 10.15 22.48 0.23 -0.61 16 10 C -0.03 -0.63 7.35 22.60 0.17 -0.47 16 11 F -0.14 -2.77 16.65 44.97 0.75 -2.02 16 12 C -0.13 -4.08 5.87 -20.12 -0.12 -4.20 16 13 C -0.03 -0.82 9.36 22.53 0.21 -0.60 16 14 C -0.19 -6.63 9.97 22.35 0.22 -6.41 16 15 C 0.14 6.35 6.65 22.67 0.15 6.50 16 16 O -0.23 -12.38 8.58 -21.55 -0.18 -12.56 16 17 C -0.40 -23.64 9.94 67.91 0.67 -22.96 16 18 H 0.08 4.95 5.42 -2.91 -0.02 4.94 16 19 C 0.01 0.59 5.49 84.82 0.47 1.05 16 20 N -0.92 -55.08 13.96 21.61 0.30 -54.78 16 21 Si 0.97 44.54 28.62 68.60 1.96 46.50 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 C -0.24 -11.10 9.15 22.35 0.20 -10.90 16 26 C -0.04 -1.46 9.57 22.53 0.22 -1.24 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.11 1.35 6.45 -2.39 -0.02 1.33 16 29 H 0.07 1.06 6.35 -2.38 -0.02 1.04 16 30 H 0.40 8.60 5.91 -213.32 -1.26 7.34 16 31 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 33 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.18 3.03 6.34 -2.91 -0.02 3.01 16 35 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 36 H 0.29 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.11 5.46 5.62 -2.91 -0.02 5.45 16 38 H 0.12 4.74 7.55 -2.91 -0.02 4.72 16 Total: -1.00 -74.85 336.34 5.58 -69.27 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.13 Total: 20.18 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 5.57 Total: -25.41 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -2.39 Total: -95.96 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.18 Total: -12.56 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.75 Total: -2.02 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.96 Total: 46.50 kcal Total: -74.85 5.58 -69.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794984364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.566 kcal (2) G-P(sol) polarization free energy of solvation -74.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds