Wall clock time and date at job start Tue Mar 31 2020 11:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46915 * 2 1 4 4 C 1.52998 * 109.47088 * 240.00354 * 2 1 3 5 5 C 1.50701 * 109.47363 * 64.99803 * 4 2 1 6 6 H 1.08005 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00191 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99657 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00063 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47026 * 90.00174 * 9 7 5 11 11 H 1.48501 * 109.47284 * 210.00318 * 9 7 5 12 12 H 1.48500 * 109.47297 * 330.00190 * 9 7 5 13 13 C 1.52994 * 109.47143 * 120.00051 * 2 1 3 14 14 N 1.46897 * 109.47271 * 295.00065 * 13 2 1 15 15 C 1.46902 * 111.00266 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47301 * 180.02562 * 15 14 13 17 17 H 1.09005 * 109.47417 * 60.00033 * 16 15 14 18 18 O 1.42902 * 109.47492 * 299.99778 * 16 15 14 19 19 C 1.50700 * 109.47216 * 179.97438 * 16 15 14 20 20 C 1.38463 * 120.01829 * 74.09642 * 19 16 15 21 21 F 1.35092 * 120.01731 * 0.02562 * 20 19 16 22 22 C 1.38443 * 119.96115 * 179.97438 * 20 19 16 23 23 C 1.38236 * 120.00209 * 0.02562 * 22 20 19 24 24 C 1.38200 * 120.03634 * 359.97438 * 23 22 20 25 25 C 1.38293 * 120.02068 * 253.81979 * 19 16 15 26 26 Cl 1.73600 * 119.99963 * 0.02562 * 25 19 16 27 27 H 1.09003 * 109.47422 * 299.99911 * 1 2 3 28 28 H 1.09000 * 109.46803 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47450 * 60.00020 * 1 2 3 30 30 H 1.09001 * 109.47153 * 184.99879 * 4 2 1 31 31 H 1.08996 * 109.47050 * 304.99701 * 4 2 1 32 32 H 0.96998 * 119.99913 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47150 * 55.00013 * 13 2 1 34 34 H 1.09003 * 109.47151 * 174.99898 * 13 2 1 35 35 H 1.00905 * 111.00071 * 56.04814 * 14 13 2 36 36 H 1.09007 * 109.46896 * 299.99917 * 15 14 13 37 37 H 1.09000 * 109.47229 * 59.99501 * 15 14 13 38 38 H 0.96698 * 113.99703 * 307.23261 * 18 16 15 39 39 H 1.07995 * 120.00036 * 180.02562 * 22 20 19 40 40 H 1.08002 * 119.97913 * 179.97438 * 23 22 20 41 41 H 1.08005 * 119.97607 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5186 -3.8512 9 14 1.4984 0.5628 -5.2496 10 1 2.5630 1.5432 -5.5822 11 1 1.3121 -0.3712 -6.3890 12 1 0.2266 1.2832 -4.9872 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6265 3.6671 16 6 1.7023 0.1908 4.8891 17 1 0.6153 0.2676 4.9161 18 8 2.2704 1.4995 4.8071 19 6 2.1885 -0.4906 6.1423 20 6 3.5308 -0.4460 6.4789 21 9 4.4054 0.2089 5.6843 22 6 3.9760 -1.0720 7.6306 23 6 3.0807 -1.7415 8.4436 24 6 1.7409 -1.7861 8.1077 25 6 1.2932 -1.1561 6.9598 26 17 -0.3910 -1.2071 6.5422 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7197 -1.2952 32 1 2.9237 -1.8415 -4.7318 33 1 1.6053 -1.7198 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 0.6528 0.1792 2.4753 36 1 1.6921 -1.6246 3.7300 37 1 3.2127 -0.7038 3.6400 38 1 3.2273 1.5048 4.6684 39 1 5.0228 -1.0372 7.8939 40 1 3.4285 -2.2301 9.3419 41 1 1.0422 -2.3092 8.7439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877058240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:51 Heat of formation + Delta-G solvation = -93.673525 kcal Electronic energy + Delta-G solvation = -23605.139686 eV Core-core repulsion = 19845.576301 eV Total energy + Delta-G solvation = -3759.563385 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.48759 -39.96568 -37.80149 -36.93848 -36.32897 -33.72474 -32.31046 -31.63970 -30.92123 -28.09376 -26.71936 -25.19052 -23.53122 -23.37091 -22.04015 -21.72874 -18.96672 -18.31181 -17.44142 -17.15776 -16.53648 -16.18140 -15.96400 -15.38429 -15.25903 -14.79923 -14.70327 -14.47483 -13.99459 -13.83881 -13.64765 -13.23969 -12.94876 -12.58455 -12.33046 -12.21696 -12.01736 -11.85398 -11.74608 -11.68629 -11.34240 -10.96173 -10.86041 -10.71586 -10.40306 -10.27773 -10.12547 -9.69208 -9.36449 -9.22238 -9.10127 -8.92731 -8.30463 -8.14326 -5.95283 -3.96180 0.45856 0.51634 1.55613 2.87542 3.35278 3.41308 3.44804 3.69482 3.88145 4.18280 4.27125 4.39077 4.50228 4.62845 4.75910 4.84625 4.91110 5.07555 5.31204 5.38602 5.40607 5.50426 5.58081 5.66210 5.77019 5.79126 5.91048 6.08753 6.17141 6.27095 6.48917 6.58533 6.94773 7.13874 7.19906 7.33191 7.51599 7.66133 7.72703 7.88682 8.05203 8.49210 9.10201 9.67092 11.16341 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.002522 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.921569 B =11101.704961 C =11627.569570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.679 5.679 15 C 0.031 3.969 16 C 0.146 3.854 17 H 0.116 0.884 18 O -0.539 6.539 19 C -0.140 4.140 20 C 0.123 3.877 21 F -0.126 7.126 22 C -0.147 4.147 23 C -0.080 4.080 24 C -0.119 4.119 25 C -0.002 4.002 26 Cl -0.048 7.048 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.340 0.660 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.377 0.623 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 -1.719 28.749 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.310 5.310 15 C -0.100 4.100 16 C 0.086 3.914 17 H 0.134 0.866 18 O -0.346 6.346 19 C -0.143 4.143 20 C 0.103 3.897 21 F -0.104 7.104 22 C -0.166 4.166 23 C -0.098 4.098 24 C -0.138 4.138 25 C -0.029 4.029 26 Cl -0.019 7.019 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.227 0.773 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.610 -1.209 28.583 28.615 hybrid contribution -0.179 -0.551 -1.068 1.215 sum -0.789 -1.760 27.514 27.582 Atomic orbital electron populations 1.21745 0.96668 1.00390 1.00364 1.21216 0.94894 1.00171 0.93974 0.91500 1.19110 0.96114 0.95350 0.90375 1.21245 1.34561 1.08231 0.90970 0.92531 1.25024 0.95368 0.95095 0.99110 1.69968 1.39191 1.21244 1.23353 0.86622 0.78946 0.79798 0.82811 1.20711 1.21351 1.19907 1.22166 1.00367 0.94383 0.89464 1.60469 1.19817 1.50096 1.00661 1.22598 1.01390 0.95550 0.90417 1.20892 0.99379 0.83052 0.88083 0.86639 1.86612 1.27696 1.25377 1.94918 1.20565 0.92004 1.01690 1.00022 1.17283 0.85948 0.95800 0.90675 1.91446 1.67992 1.78454 1.72543 1.21290 1.01851 0.99414 0.94009 1.20998 0.91954 0.97477 0.99365 1.21152 0.96689 1.00073 0.95879 1.20542 0.85969 1.00431 0.95977 1.98402 1.13361 1.96961 1.93157 0.94898 0.94075 0.91812 0.96686 0.96782 0.93125 0.95842 0.91485 0.84092 0.94431 0.90539 0.77329 0.83792 0.83806 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.16 0.33 -2.24 16 2 C -0.08 -1.75 2.54 -90.62 -0.23 -1.98 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.52 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.15 5.14 -3.83 -0.02 1.13 16 14 N -0.68 -10.40 6.37 -113.78 -0.72 -11.13 16 15 C 0.03 0.40 5.20 -3.83 -0.02 0.38 16 16 C 0.15 1.74 3.12 -27.89 -0.09 1.65 16 17 H 0.12 1.38 6.34 -51.93 -0.33 1.05 16 18 O -0.54 -7.24 13.04 -35.23 -0.46 -7.70 16 19 C -0.14 -1.44 4.97 -104.52 -0.52 -1.96 16 20 C 0.12 1.17 6.98 -39.42 -0.28 0.89 16 21 F -0.13 -1.30 14.09 2.25 0.03 -1.27 16 22 C -0.15 -1.03 10.03 -39.51 -0.40 -1.42 16 23 C -0.08 -0.45 10.04 -39.60 -0.40 -0.85 16 24 C -0.12 -0.80 9.83 -39.54 -0.39 -1.19 16 25 C 0.00 -0.02 6.31 -39.51 -0.25 -0.27 16 26 Cl -0.05 -0.44 27.06 -51.86 -1.40 -1.84 16 27 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.34 5.02 6.98 -39.29 -0.27 4.75 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 1.01 7.54 -51.93 -0.39 0.62 16 38 H 0.38 4.52 6.62 45.56 0.30 4.82 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 41 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -31.34 353.62 -9.41 -40.76 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.13 Total: 4.02 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -2.77 Total: -18.57 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.01 Total: -37.67 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.46 Total: -7.70 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.03 Total: -1.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.40 Total: -1.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.34 -9.41 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877058240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.918 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds