Wall clock time and date at job start Tue Mar 31 2020 11:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46915 * 2 1 4 4 C 1.52998 * 109.47088 * 240.00354 * 2 1 3 5 5 C 1.50701 * 109.47363 * 64.99803 * 4 2 1 6 6 H 1.08005 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00191 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99657 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00063 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47026 * 90.00174 * 9 7 5 11 11 H 1.48501 * 109.47284 * 210.00318 * 9 7 5 12 12 H 1.48500 * 109.47297 * 330.00190 * 9 7 5 13 13 C 1.52994 * 109.47143 * 120.00051 * 2 1 3 14 14 N 1.46897 * 109.47271 * 295.00065 * 13 2 1 15 15 C 1.46902 * 111.00266 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47301 * 180.02562 * 15 14 13 17 17 H 1.09005 * 109.47417 * 60.00033 * 16 15 14 18 18 O 1.42902 * 109.47492 * 299.99778 * 16 15 14 19 19 C 1.50700 * 109.47216 * 179.97438 * 16 15 14 20 20 C 1.38463 * 120.01829 * 74.09642 * 19 16 15 21 21 F 1.35092 * 120.01731 * 0.02562 * 20 19 16 22 22 C 1.38443 * 119.96115 * 179.97438 * 20 19 16 23 23 C 1.38236 * 120.00209 * 0.02562 * 22 20 19 24 24 C 1.38200 * 120.03634 * 359.97438 * 23 22 20 25 25 C 1.38293 * 120.02068 * 253.81979 * 19 16 15 26 26 Cl 1.73600 * 119.99963 * 0.02562 * 25 19 16 27 27 H 1.09003 * 109.47422 * 299.99911 * 1 2 3 28 28 H 1.09000 * 109.46803 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47450 * 60.00020 * 1 2 3 30 30 H 1.09001 * 109.47153 * 184.99879 * 4 2 1 31 31 H 1.08996 * 109.47050 * 304.99701 * 4 2 1 32 32 H 0.96998 * 119.99913 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47150 * 55.00013 * 13 2 1 34 34 H 1.09003 * 109.47151 * 174.99898 * 13 2 1 35 35 H 1.00905 * 111.00071 * 56.04814 * 14 13 2 36 36 H 1.09007 * 109.46896 * 299.99917 * 15 14 13 37 37 H 1.09000 * 109.47229 * 59.99501 * 15 14 13 38 38 H 0.96698 * 113.99703 * 307.23261 * 18 16 15 39 39 H 1.07995 * 120.00036 * 180.02562 * 22 20 19 40 40 H 1.08002 * 119.97913 * 179.97438 * 23 22 20 41 41 H 1.08005 * 119.97607 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5186 -3.8512 9 14 1.4984 0.5628 -5.2496 10 1 2.5630 1.5432 -5.5822 11 1 1.3121 -0.3712 -6.3890 12 1 0.2266 1.2832 -4.9872 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6265 3.6671 16 6 1.7023 0.1908 4.8891 17 1 0.6153 0.2676 4.9161 18 8 2.2704 1.4995 4.8071 19 6 2.1885 -0.4906 6.1423 20 6 3.5308 -0.4460 6.4789 21 9 4.4054 0.2089 5.6843 22 6 3.9760 -1.0720 7.6306 23 6 3.0807 -1.7415 8.4436 24 6 1.7409 -1.7861 8.1077 25 6 1.2932 -1.1561 6.9598 26 17 -0.3910 -1.2071 6.5422 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7197 -1.2952 32 1 2.9237 -1.8415 -4.7318 33 1 1.6053 -1.7198 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 0.6528 0.1792 2.4753 36 1 1.6921 -1.6246 3.7300 37 1 3.2127 -0.7038 3.6400 38 1 3.2273 1.5048 4.6684 39 1 5.0228 -1.0372 7.8939 40 1 3.4285 -2.2301 9.3419 41 1 1.0422 -2.3092 8.7439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877058240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:51 Heat of formation + Delta-G solvation = -114.014250 kcal Electronic energy + Delta-G solvation = -23606.021726 eV Core-core repulsion = 19845.576301 eV Total energy + Delta-G solvation = -3760.445425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.19245 -40.64152 -38.88765 -37.71589 -37.57526 -35.41734 -33.87578 -32.73707 -31.49046 -29.46642 -28.42118 -26.65255 -24.80942 -24.02623 -23.55093 -22.57334 -20.68899 -18.97069 -18.56506 -18.17638 -17.97945 -17.13051 -16.89234 -16.58669 -16.37369 -15.93358 -15.72518 -15.64208 -15.34564 -14.74843 -14.63047 -14.42988 -14.28698 -13.91027 -13.74073 -13.32200 -13.24689 -12.98692 -12.89906 -12.77924 -12.56658 -12.47705 -12.43768 -12.23564 -11.96552 -11.77782 -11.52027 -11.31432 -11.07891 -10.88490 -10.53791 -9.96502 -9.81162 -9.41617 -8.17918 -6.26929 -0.12692 -0.07310 0.92041 1.39918 1.41101 1.52017 2.30825 2.41865 2.93140 3.08823 3.15512 3.36590 3.59094 3.68303 3.78713 3.97357 4.04601 4.18037 4.20047 4.25938 4.38436 4.43766 4.52592 4.67444 4.73575 4.76589 4.84582 5.00680 5.03292 5.05236 5.16363 5.21941 5.36523 5.46880 5.54259 5.63539 5.77568 5.88231 5.97512 6.30216 6.38244 6.61202 6.88755 7.41224 8.94303 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.002522 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.921569 B =11101.704961 C =11627.569570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.056 0.944 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.078 3.922 14 N -0.680 5.680 15 C 0.035 3.965 16 C 0.151 3.849 17 H 0.114 0.886 18 O -0.555 6.555 19 C -0.160 4.160 20 C 0.100 3.900 21 F -0.137 7.137 22 C -0.145 4.145 23 C -0.066 4.066 24 C -0.116 4.116 25 C -0.015 4.015 26 Cl -0.056 7.056 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.046 0.954 30 H -0.014 1.014 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.025 0.975 34 H 0.057 0.943 35 H 0.345 0.655 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.380 0.620 39 H 0.166 0.834 40 H 0.183 0.817 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -1.671 30.677 30.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.187 1.187 13 C -0.051 4.051 14 N -0.312 5.312 15 C -0.094 4.094 16 C 0.092 3.908 17 H 0.132 0.868 18 O -0.363 6.363 19 C -0.162 4.162 20 C 0.081 3.919 21 F -0.116 7.116 22 C -0.163 4.163 23 C -0.084 4.084 24 C -0.135 4.135 25 C -0.042 4.042 26 Cl -0.027 7.027 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.005 0.995 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.183 0.817 40 H 0.200 0.800 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.096 -1.153 30.530 30.571 hybrid contribution 0.012 -0.614 -1.562 1.678 sum -1.084 -1.767 28.968 29.042 Atomic orbital electron populations 1.21651 0.94938 1.00713 1.01098 1.21009 0.96269 0.98993 0.93124 0.92554 1.18995 0.94196 0.94600 0.92607 1.21638 1.34459 1.08521 0.92067 0.92128 1.25957 0.95272 0.96105 1.02661 1.70101 1.40336 1.22929 1.24297 0.85498 0.79020 0.78368 0.78490 1.19950 1.20829 1.18739 1.21860 0.99635 0.94240 0.89374 1.60381 1.20232 1.49991 1.00634 1.22591 1.01084 0.95919 0.89837 1.20787 0.99183 0.82368 0.88499 0.86847 1.86573 1.28118 1.26546 1.95079 1.20405 0.92792 1.03143 0.99903 1.17591 0.85694 0.96873 0.91747 1.91411 1.68223 1.78881 1.73069 1.21642 1.03338 0.98423 0.92935 1.21476 0.91082 0.95964 0.99858 1.21524 0.97775 0.99136 0.95026 1.20720 0.85480 1.01151 0.96838 1.98395 1.13920 1.97024 1.93328 0.91667 0.93941 0.93503 0.99537 0.99091 0.92924 0.95675 0.92451 0.83522 0.93830 0.90962 0.76936 0.81655 0.79982 0.81662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.77 71.98 0.63 -4.14 16 2 C -0.08 -3.18 2.54 -10.80 -0.03 -3.21 16 3 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.03 1.81 4.45 29.85 0.13 1.94 16 5 C -0.53 -30.51 8.41 25.60 0.22 -30.30 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 9 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.08 2.80 5.14 86.30 0.44 3.25 16 14 N -0.68 -20.62 6.37 -513.90 -3.27 -23.89 16 15 C 0.04 0.91 5.20 86.30 0.45 1.36 16 16 C 0.15 3.57 3.12 29.85 0.09 3.66 16 17 H 0.11 2.67 6.34 -2.38 -0.02 2.66 16 18 O -0.56 -14.97 13.04 -148.98 -1.94 -16.92 16 19 C -0.16 -3.18 4.97 -19.80 -0.10 -3.28 16 20 C 0.10 1.82 6.98 22.37 0.16 1.98 16 21 F -0.14 -2.83 14.09 44.97 0.63 -2.19 16 22 C -0.14 -1.66 10.03 22.32 0.22 -1.44 16 23 C -0.07 -0.50 10.04 22.26 0.22 -0.28 16 24 C -0.12 -1.23 9.83 22.30 0.22 -1.01 16 25 C -0.01 -0.25 6.31 22.32 0.14 -0.11 16 26 Cl -0.06 -0.96 27.06 -2.72 -0.07 -1.04 16 27 H 0.06 2.02 6.68 -2.39 -0.02 2.00 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.91 6.95 -2.38 -0.02 1.89 16 30 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.35 9.83 6.98 -89.69 -0.63 9.21 16 36 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 1.92 7.54 -2.39 -0.02 1.91 16 38 H 0.38 9.33 6.62 -74.06 -0.49 8.84 16 39 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.18 0.00 8.06 -2.91 -0.02 -0.03 16 41 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -68.81 353.62 0.86 -67.94 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -0.06 Total: 17.82 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 3.27 Total: -31.26 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.99 Total: -81.63 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.94 Total: -16.92 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.63 Total: -2.19 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.04 kcal Total: -68.81 0.86 -67.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877058240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.072 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds