Wall clock time and date at job start Tue Mar 31 2020 11:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47005 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.47008 * 304.99240 * 16 15 14 18 18 O 1.42896 * 109.47226 * 65.00139 * 16 15 14 19 19 C 1.50706 * 109.46956 * 184.99878 * 16 15 14 20 20 C 1.38261 * 119.97472 * 279.72435 * 19 16 15 21 21 C 1.38216 * 120.05689 * 179.76935 * 20 19 16 22 22 C 1.38325 * 120.01754 * 0.50474 * 21 20 19 23 23 Cl 1.73594 * 120.02655 * 179.76900 * 22 21 20 24 24 C 1.38549 * 119.94433 * 359.74703 * 22 21 20 25 25 F 1.35099 * 120.02590 * 180.02562 * 24 22 21 26 26 C 1.38201 * 119.97417 * 99.99694 * 19 16 15 27 27 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 29 29 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 30 30 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 31 31 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 32 32 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 33 33 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 34 34 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 35 35 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 36 36 H 1.09006 * 109.47224 * 299.99867 * 15 14 13 37 37 H 1.09009 * 109.47278 * 59.99601 * 15 14 13 38 38 H 0.96698 * 114.00212 * 59.99753 * 18 16 15 39 39 H 1.07995 * 119.97140 * 359.97438 * 20 19 16 40 40 H 1.08004 * 119.99140 * 180.23132 * 21 20 19 41 41 H 1.07998 * 120.00406 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.0897 1.9224 -5.1877 11 1 1.9928 -0.1381 -6.4622 12 1 0.0176 0.6683 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.7013 0.1906 4.8893 17 1 2.0610 1.2141 4.7841 18 8 0.2758 0.1944 4.9891 19 6 2.2903 -0.4235 6.1331 20 6 1.6880 -1.5256 6.7112 21 6 2.2295 -2.0931 7.8492 22 6 3.3690 -1.5523 8.4171 23 17 4.0459 -2.2612 9.8499 24 6 3.9699 -0.4447 7.8412 25 9 5.0832 0.0845 8.3941 26 6 3.4289 0.1189 6.6983 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7198 -1.2950 31 1 3.1264 -0.7995 -1.2054 32 1 2.9272 -2.0234 -3.0613 33 1 1.6054 -1.7197 1.2953 34 1 3.1264 -0.7994 1.2057 35 1 1.9881 0.9874 2.3966 36 1 1.6903 -1.6247 3.7298 37 1 3.2117 -0.7049 3.6406 38 1 -0.1141 -0.6852 5.0852 39 1 0.7956 -1.9455 6.2712 40 1 1.7603 -2.9563 8.2978 41 1 3.8960 0.9828 6.2489 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877128122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:05 Heat of formation + Delta-G solvation = -99.537665 kcal Electronic energy + Delta-G solvation = -22950.785653 eV Core-core repulsion = 19190.967980 eV Total energy + Delta-G solvation = -3759.817673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.41618 -40.22531 -37.92707 -36.96872 -36.36711 -34.05703 -32.36713 -31.69818 -31.02910 -28.12953 -26.40978 -25.11541 -23.63262 -23.43920 -22.22942 -21.63737 -19.39611 -18.47366 -17.32675 -16.99494 -16.70981 -16.69214 -16.22262 -15.77430 -15.14188 -14.79104 -14.51762 -14.30418 -13.94446 -13.70904 -13.60000 -13.46149 -13.18092 -12.86633 -12.59905 -12.32204 -12.06381 -11.90304 -11.68926 -11.49319 -11.36396 -11.29584 -10.99795 -10.69666 -10.56741 -10.16801 -10.08499 -9.84017 -9.55085 -9.45536 -9.13497 -8.47644 -8.30391 -8.26930 -6.32833 -4.00963 0.35491 0.52286 1.49562 2.81930 3.45163 3.47082 3.48319 3.65611 3.83955 4.03292 4.14977 4.45067 4.53250 4.57846 4.62060 4.69745 4.85727 5.01255 5.26220 5.32430 5.37517 5.42955 5.46648 5.48677 5.59538 5.73402 5.89388 6.01608 6.10235 6.27578 6.40388 6.57602 6.85658 7.03872 7.10023 7.17496 7.31623 7.39701 7.49407 7.58781 8.26327 8.50028 8.92107 9.70378 11.07499 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.001984 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.485521 B =14109.004799 C =14372.291466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.055 0.945 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.283 1.283 12 H -0.288 1.288 13 C 0.063 3.937 14 N -0.677 5.677 15 C 0.031 3.969 16 C 0.151 3.849 17 H 0.111 0.889 18 O -0.536 6.536 19 C -0.079 4.079 20 C -0.109 4.109 21 C -0.078 4.078 22 C -0.077 4.077 23 Cl -0.050 7.050 24 C 0.113 3.887 25 F -0.126 7.126 26 C -0.132 4.132 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.007 0.993 31 H 0.002 0.998 32 H 0.267 0.733 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.339 0.661 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.373 0.627 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 -0.286 27.546 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.215 1.215 11 H -0.209 1.209 12 H -0.214 1.214 13 C -0.065 4.065 14 N -0.308 5.308 15 C -0.099 4.099 16 C 0.091 3.909 17 H 0.129 0.871 18 O -0.341 6.341 19 C -0.080 4.080 20 C -0.127 4.127 21 C -0.096 4.096 22 C -0.104 4.104 23 Cl -0.021 7.021 24 C 0.093 3.907 25 F -0.104 7.104 26 C -0.151 4.151 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.221 0.779 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.482 0.033 26.009 26.013 hybrid contribution 1.270 -0.495 2.013 2.431 sum 0.788 -0.462 28.021 28.036 Atomic orbital electron populations 1.21579 0.95370 1.00533 1.00472 1.21060 0.96266 0.98825 0.93261 0.92659 1.19251 0.95076 0.95632 0.92394 1.22028 1.38606 1.10295 0.92244 0.93178 1.25840 0.94750 0.97150 1.01420 1.70784 1.36331 1.14673 1.33441 0.83563 0.76089 0.75119 0.75630 1.21522 1.20872 1.21447 1.22186 0.97037 0.97733 0.89558 1.60437 1.63895 1.05642 1.00826 1.22635 0.98205 0.98546 0.90513 1.20837 0.81635 0.99858 0.88551 0.87121 1.86690 1.17710 1.33899 1.95802 1.20628 0.94550 0.95321 0.97486 1.20963 1.00595 0.95580 0.95588 1.20973 0.93346 0.99890 0.95408 1.21043 0.98629 0.97315 0.93461 1.98398 1.84608 1.82828 1.36279 1.17372 0.85594 0.93619 0.94136 1.91558 1.49038 1.85241 1.84553 1.21001 0.97291 1.01942 0.94913 0.94326 0.93557 0.92653 0.97508 0.97934 0.92229 0.91602 0.95880 0.84294 0.90508 0.94429 0.77908 0.84206 0.83651 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.51 2.48 -90.62 -0.22 -1.73 16 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -16.73 8.41 -34.44 -0.29 -17.02 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.17 13.65 55.43 0.76 -27.42 16 9 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.03 5.07 -3.82 -0.02 1.01 16 14 N -0.68 -8.85 5.90 -113.77 -0.67 -9.52 16 15 C 0.03 0.31 5.30 -3.83 -0.02 0.29 16 16 C 0.15 1.27 3.39 -27.88 -0.09 1.18 16 17 H 0.11 0.91 8.00 -51.93 -0.42 0.50 16 18 O -0.54 -5.08 13.13 -35.23 -0.46 -5.55 16 19 C -0.08 -0.60 4.97 -104.62 -0.52 -1.12 16 20 C -0.11 -0.70 9.32 -39.58 -0.37 -1.07 16 21 C -0.08 -0.52 9.83 -39.56 -0.39 -0.91 16 22 C -0.08 -0.65 6.33 -39.43 -0.25 -0.90 16 23 Cl -0.05 -0.42 28.62 -51.86 -1.48 -1.90 16 24 C 0.11 1.03 7.28 -39.39 -0.29 0.74 16 25 F -0.13 -1.27 16.84 2.25 0.04 -1.23 16 26 C -0.13 -1.06 9.65 -39.52 -0.38 -1.44 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.80 7.75 -51.93 -0.40 0.40 16 29 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 30 H 0.01 0.18 8.00 -51.93 -0.42 -0.24 16 31 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 32 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 33 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 4.27 8.73 -39.29 -0.34 3.92 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.37 2.36 7.49 45.56 0.34 2.70 16 39 H 0.14 0.57 6.77 -52.49 -0.36 0.21 16 40 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 41 H 0.15 0.96 8.04 -52.49 -0.42 0.54 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -32.05 360.44 -9.40 -41.45 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.21 Total: 0.93 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.72 Total: -22.51 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.09 Total: -36.94 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.46 Total: -5.55 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.48 Total: -1.90 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.05 -9.40 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877128122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.084 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds