Wall clock time and date at job start Tue Mar 31 2020 11:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47005 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.47008 * 304.99240 * 16 15 14 18 18 O 1.42896 * 109.47226 * 65.00139 * 16 15 14 19 19 C 1.50706 * 109.46956 * 184.99878 * 16 15 14 20 20 C 1.38261 * 119.97472 * 279.72435 * 19 16 15 21 21 C 1.38216 * 120.05689 * 179.76935 * 20 19 16 22 22 C 1.38325 * 120.01754 * 0.50474 * 21 20 19 23 23 Cl 1.73594 * 120.02655 * 179.76900 * 22 21 20 24 24 C 1.38549 * 119.94433 * 359.74703 * 22 21 20 25 25 F 1.35099 * 120.02590 * 180.02562 * 24 22 21 26 26 C 1.38201 * 119.97417 * 99.99694 * 19 16 15 27 27 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 29 29 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 30 30 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 31 31 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 32 32 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 33 33 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 34 34 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 35 35 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 36 36 H 1.09006 * 109.47224 * 299.99867 * 15 14 13 37 37 H 1.09009 * 109.47278 * 59.99601 * 15 14 13 38 38 H 0.96698 * 114.00212 * 59.99753 * 18 16 15 39 39 H 1.07995 * 119.97140 * 359.97438 * 20 19 16 40 40 H 1.08004 * 119.99140 * 180.23132 * 21 20 19 41 41 H 1.07998 * 120.00406 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.0897 1.9224 -5.1877 11 1 1.9928 -0.1381 -6.4622 12 1 0.0176 0.6683 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.7013 0.1906 4.8893 17 1 2.0610 1.2141 4.7841 18 8 0.2758 0.1944 4.9891 19 6 2.2903 -0.4235 6.1331 20 6 1.6880 -1.5256 6.7112 21 6 2.2295 -2.0931 7.8492 22 6 3.3690 -1.5523 8.4171 23 17 4.0459 -2.2612 9.8499 24 6 3.9699 -0.4447 7.8412 25 9 5.0832 0.0845 8.3941 26 6 3.4289 0.1189 6.6983 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7198 -1.2950 31 1 3.1264 -0.7995 -1.2054 32 1 2.9272 -2.0234 -3.0613 33 1 1.6054 -1.7197 1.2953 34 1 3.1264 -0.7994 1.2057 35 1 1.9881 0.9874 2.3966 36 1 1.6903 -1.6247 3.7298 37 1 3.2117 -0.7049 3.6406 38 1 -0.1141 -0.6852 5.0852 39 1 0.7956 -1.9455 6.2712 40 1 1.7603 -2.9563 8.2978 41 1 3.8960 0.9828 6.2489 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877128122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:05 Heat of formation + Delta-G solvation = -120.172593 kcal Electronic energy + Delta-G solvation = -22951.680451 eV Core-core repulsion = 19190.967980 eV Total energy + Delta-G solvation = -3760.712471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.10689 -40.83013 -38.80328 -37.94425 -37.30324 -35.62759 -33.86656 -32.61026 -31.63252 -29.20800 -28.22319 -26.45184 -24.80812 -24.19413 -23.62962 -22.32928 -21.00082 -19.11767 -18.82891 -17.96037 -17.59219 -17.44219 -16.90568 -16.66399 -16.17798 -15.90333 -15.63272 -15.49420 -15.14991 -14.96544 -14.85231 -14.33995 -14.12097 -13.84610 -13.53314 -13.44927 -13.22296 -13.08428 -12.91044 -12.84606 -12.64399 -12.45807 -12.11792 -11.96741 -11.94031 -11.89333 -11.56531 -11.35181 -11.08590 -10.54286 -10.51211 -10.10420 -9.74953 -9.35079 -8.64437 -6.33416 -0.23979 -0.03141 0.88873 1.53299 1.61695 1.80549 2.24852 2.58507 2.84196 3.07810 3.19325 3.43023 3.60345 3.73220 3.88206 3.96830 4.06289 4.11995 4.15640 4.27456 4.42902 4.46803 4.60923 4.68768 4.77465 4.81137 4.83148 4.87097 4.91591 4.94997 5.09612 5.29590 5.34310 5.39630 5.51083 5.55203 5.66588 5.95860 6.10363 6.23475 6.41606 6.63607 6.83927 7.47168 8.76210 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.001984 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.485521 B =14109.004799 C =14372.291466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.069 4.069 3 H 0.052 0.948 4 C 0.015 3.985 5 C -0.604 4.604 6 H 0.052 0.948 7 C -0.045 4.045 8 N -0.942 5.942 9 Si 1.115 2.885 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.078 3.922 14 N -0.676 5.676 15 C 0.033 3.967 16 C 0.164 3.836 17 H 0.112 0.888 18 O -0.551 6.551 19 C -0.082 4.082 20 C -0.102 4.102 21 C -0.076 4.076 22 C -0.086 4.086 23 Cl -0.056 7.056 24 C 0.090 3.910 25 F -0.138 7.138 26 C -0.135 4.135 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.033 0.967 30 H -0.013 1.013 31 H -0.018 1.018 32 H 0.254 0.746 33 H 0.064 0.936 34 H 0.017 0.983 35 H 0.343 0.657 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.386 0.614 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 0.257 28.301 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.022 4.022 5 C -0.642 4.642 6 H 0.070 0.930 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.937 3.063 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.051 4.051 14 N -0.307 5.307 15 C -0.097 4.097 16 C 0.104 3.896 17 H 0.130 0.870 18 O -0.359 6.359 19 C -0.083 4.083 20 C -0.120 4.120 21 C -0.095 4.095 22 C -0.114 4.114 23 Cl -0.027 7.027 24 C 0.070 3.930 25 F -0.116 7.116 26 C -0.154 4.154 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.005 0.995 31 H 0.000 1.000 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.162 0.838 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.237 0.763 39 H 0.185 0.815 40 H 0.185 0.815 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.818 0.576 26.805 26.873 hybrid contribution 1.667 -0.693 1.839 2.576 sum -0.151 -0.116 28.643 28.644 Atomic orbital electron populations 1.21470 0.94484 1.00367 1.00587 1.20902 0.96851 0.98253 0.92758 0.92971 1.19198 0.93675 0.94935 0.94408 1.22444 1.37915 1.10417 0.93429 0.92954 1.27403 0.94154 0.97309 1.05250 1.70920 1.38323 1.15989 1.32789 0.82955 0.76963 0.74548 0.71852 1.19447 1.21144 1.19420 1.21845 0.96414 0.97429 0.89410 1.60365 1.64020 1.05729 1.00605 1.22699 0.98360 0.98972 0.89653 1.20651 0.81358 0.99658 0.87976 0.87026 1.86669 1.18056 1.35345 1.95781 1.20572 0.94550 0.95864 0.97354 1.21304 1.00985 0.94715 0.95032 1.21260 0.92598 1.00296 0.95296 1.21262 0.99266 0.97384 0.93488 1.98393 1.84819 1.82835 1.36636 1.17598 0.85877 0.94492 0.95004 1.91521 1.49742 1.85533 1.84840 1.21145 0.97452 1.02231 0.94599 0.94605 0.91067 0.94744 0.99496 1.00001 0.93683 0.91736 0.96490 0.83839 0.89737 0.94256 0.76348 0.81499 0.81470 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.18 8.89 71.98 0.64 -3.54 16 2 C -0.07 -2.72 2.48 -10.79 -0.03 -2.75 16 3 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.02 0.79 3.76 29.85 0.11 0.90 16 5 C -0.60 -34.29 8.41 25.60 0.22 -34.08 16 6 H 0.05 2.89 7.06 -2.91 -0.02 2.87 16 7 C -0.04 -2.60 5.46 84.66 0.46 -2.14 16 8 N -0.94 -59.02 13.65 21.45 0.29 -58.73 16 9 Si 1.12 50.58 29.90 68.60 2.05 52.63 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 C 0.08 2.46 5.07 86.30 0.44 2.90 16 14 N -0.68 -16.19 5.90 -513.85 -3.03 -19.23 16 15 C 0.03 0.57 5.30 86.30 0.46 1.03 16 16 C 0.16 2.34 3.39 29.85 0.10 2.44 16 17 H 0.11 1.59 8.00 -2.39 -0.02 1.57 16 18 O -0.55 -8.81 13.13 -148.98 -1.96 -10.76 16 19 C -0.08 -1.06 4.97 -19.87 -0.10 -1.16 16 20 C -0.10 -1.01 9.32 22.27 0.21 -0.80 16 21 C -0.08 -0.84 9.83 22.29 0.22 -0.62 16 22 C -0.09 -1.35 6.33 22.36 0.14 -1.21 16 23 Cl -0.06 -0.90 28.62 -2.72 -0.08 -0.98 16 24 C 0.09 1.58 7.28 22.39 0.16 1.74 16 25 F -0.14 -2.80 16.84 44.97 0.76 -2.04 16 26 C -0.14 -1.99 9.65 22.31 0.22 -1.78 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 2.30 7.75 -2.39 -0.02 2.28 16 29 H 0.03 1.40 6.95 -2.39 -0.02 1.39 16 30 H -0.01 -0.73 8.00 -2.39 -0.02 -0.75 16 31 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 32 H 0.25 16.08 7.22 -92.71 -0.67 15.41 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.34 7.89 8.73 -89.70 -0.78 7.11 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.39 3.55 7.49 -74.06 -0.55 3.00 16 39 H 0.17 0.69 6.77 -2.91 -0.02 0.67 16 40 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 41 H 0.16 1.87 8.04 -2.91 -0.02 1.85 16 Total: -1.00 -69.37 360.44 1.10 -68.27 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -0.18 Total: 9.89 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 3.25 Total: -39.06 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.74 Total: -77.95 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.96 Total: -10.76 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.76 Total: -2.04 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -69.37 1.10 -68.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877128122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.901 kcal (2) G-P(sol) polarization free energy of solvation -69.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds