Wall clock time and date at job start Tue Mar 31 2020 10:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99966 * 2 1 4 4 N 1.46894 * 109.47083 * 125.12509 * 3 2 1 5 5 C 1.46905 * 111.00170 * 199.66934 * 4 3 2 6 6 C 1.50704 * 109.46988 * 66.04148 * 5 4 3 7 7 H 1.07998 * 120.00178 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99704 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00126 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99705 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47332 * 59.99434 * 10 8 6 12 12 H 1.48499 * 109.47183 * 179.97438 * 10 8 6 13 13 H 1.48510 * 109.46786 * 299.99642 * 10 8 6 14 14 C 1.46904 * 111.00547 * 75.71323 * 4 3 2 15 15 C 1.50693 * 109.47503 * 199.60534 * 14 4 3 16 16 C 1.38254 * 119.95735 * 254.79735 * 15 14 4 17 17 C 1.38139 * 120.07892 * 179.97438 * 16 15 14 18 18 C 1.38764 * 119.99443 * 0.02562 * 17 16 15 19 19 O 1.35899 * 120.04312 * 179.97438 * 18 17 16 20 20 C 1.42905 * 117.00061 * 179.97438 * 19 18 17 21 21 F 1.39892 * 109.47201 * 300.00550 * 20 19 18 22 22 F 1.39901 * 109.46635 * 60.00821 * 20 19 18 23 23 C 1.38675 * 119.91716 * 359.74467 * 18 17 16 24 24 C 1.38381 * 119.91734 * 0.49294 * 23 18 17 25 25 F 1.35101 * 119.99769 * 179.79101 * 24 23 18 26 26 H 1.08004 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.00109 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99931 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47684 * 5.11995 * 3 2 1 30 30 H 1.09007 * 109.47318 * 245.12147 * 3 2 1 31 31 H 1.08999 * 109.47317 * 186.04373 * 5 4 3 32 32 H 1.08997 * 109.46841 * 306.04594 * 5 4 3 33 33 H 0.96996 * 120.00058 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.46732 * 79.60337 * 14 4 3 35 35 H 1.08998 * 109.46916 * 319.61124 * 14 4 3 36 36 H 1.07998 * 119.96080 * 359.97073 * 16 15 14 37 37 H 1.07993 * 120.00134 * 180.02562 * 17 16 15 38 38 H 1.09004 * 109.46648 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.04112 * 180.27418 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9984 1.3307 1.1327 5 6 3.4008 2.7070 1.4523 6 6 2.2062 3.4755 1.9557 7 1 1.2445 2.9901 2.0312 8 6 2.3413 4.7985 2.3200 9 7 3.5125 5.3895 2.2285 10 14 0.8607 5.7509 2.9447 11 1 0.3296 5.0948 4.1664 12 1 1.2674 7.1421 3.2676 13 1 -0.1917 5.7728 1.8972 14 6 4.1716 0.4876 0.8664 15 6 4.8505 0.1458 2.1676 16 6 6.0355 0.7688 2.5125 17 6 6.6597 0.4578 3.7049 18 6 6.0975 -0.4813 4.5579 19 8 6.7110 -0.7884 5.7310 20 6 6.0752 -1.7637 6.5598 21 9 4.7969 -1.3161 6.9099 22 9 5.9716 -2.9720 5.8623 23 6 4.9064 -1.1026 4.2140 24 6 4.2866 -0.7920 3.0163 25 9 3.1284 -1.3994 2.6777 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3588 2.1315 0.0917 30 1 2.6196 1.4036 -0.9323 31 1 4.1728 2.6905 2.2215 32 1 3.7912 3.1887 0.5559 33 1 3.6074 6.3202 2.4844 34 1 4.8679 1.0266 0.2239 35 1 3.8547 -0.4295 0.3700 36 1 6.4738 1.4995 1.8489 37 1 7.5851 0.9455 3.9733 38 1 6.6675 -1.9152 7.4622 39 1 4.4648 -1.8305 4.8784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877546470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:21 Heat of formation + Delta-G solvation = -136.864092 kcal Electronic energy + Delta-G solvation = -26627.047162 eV Core-core repulsion = 22313.814213 eV Total energy + Delta-G solvation = -4313.232949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.49974 -48.49083 -47.48767 -39.89728 -37.92688 -36.49409 -33.17412 -32.49564 -30.68234 -30.40996 -27.48024 -26.59643 -25.28820 -23.75870 -22.87003 -21.73390 -20.36036 -19.21842 -19.06309 -18.45676 -18.05797 -16.70438 -16.42405 -15.90065 -15.72897 -15.36149 -15.02207 -14.76022 -14.64336 -14.51796 -14.02073 -13.99284 -13.78270 -13.74217 -13.52781 -13.45610 -13.02427 -12.50579 -12.34492 -12.16068 -11.86468 -11.64268 -11.40383 -11.24646 -11.03493 -10.79877 -10.72938 -10.62711 -10.21779 -9.87749 -9.22935 -8.85728 -8.72926 -8.42283 -8.12347 -7.26559 -6.02154 -4.02533 1.33072 1.36767 2.41947 2.80525 3.29883 3.34536 3.38337 3.42199 3.68216 4.09342 4.44347 4.45690 4.49517 4.82595 5.00161 5.02446 5.19389 5.32029 5.34697 5.52455 5.60028 5.72889 5.79913 5.93030 6.06034 6.15446 6.24821 6.30851 6.33504 6.54781 6.60207 6.64717 7.10431 7.12603 7.25970 7.30886 7.34717 7.80763 8.07611 8.19090 8.53378 9.04616 9.61350 11.08702 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.004463 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.885827 B = 6271.717027 C = 7303.396520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C 0.084 3.916 4 N -0.527 5.527 5 C 0.193 3.807 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.093 3.907 15 C -0.115 4.115 16 C -0.046 4.046 17 C -0.145 4.145 18 C 0.123 3.877 19 O -0.318 6.318 20 C 0.410 3.590 21 F -0.196 7.196 22 F -0.200 7.200 23 C -0.234 4.234 24 C 0.162 3.838 25 F -0.126 7.126 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.030 0.970 31 H 0.035 0.965 32 H -0.009 1.009 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.181 0.819 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 -14.545 3.855 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.147 4.147 3 C -0.043 4.043 4 N -0.251 5.251 5 C 0.068 3.932 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.035 4.035 15 C -0.117 4.117 16 C -0.064 4.064 17 C -0.163 4.163 18 C 0.079 3.921 19 O -0.236 6.236 20 C 0.320 3.680 21 F -0.178 7.178 22 F -0.182 7.182 23 C -0.253 4.253 24 C 0.142 3.858 25 F -0.104 7.104 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.009 0.991 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.197 0.803 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.101 -14.508 4.343 16.726 hybrid contribution -0.855 0.635 -0.159 1.077 sum 6.246 -13.872 4.184 15.778 Atomic orbital electron populations 1.23671 0.95969 1.01118 1.03251 1.22970 0.95881 0.98420 0.97425 1.21188 0.95966 0.95695 0.91500 1.62125 1.12101 1.14102 1.36749 1.19790 0.96933 0.81154 0.95344 1.21116 0.95650 0.94948 1.42822 0.91930 1.24949 0.95953 0.97639 0.95860 1.69934 1.22898 1.12244 1.48715 0.86597 0.82847 0.78740 0.79470 1.20200 1.21364 1.20271 1.20913 0.92958 0.98107 0.91538 1.19932 0.96134 0.97089 0.98534 1.20817 0.93456 0.96761 0.95386 1.20380 1.02470 0.99254 0.94229 1.18428 0.91959 0.96387 0.85289 1.86608 1.49600 1.57103 1.30286 1.23339 0.80234 0.74124 0.90291 1.93125 1.43608 1.88968 1.92067 1.93095 1.96217 1.47100 1.81800 1.21307 0.97921 1.06680 0.99437 1.17029 0.82459 0.93311 0.93042 1.91505 1.45752 1.81100 1.92041 0.88674 0.89346 0.88414 0.88850 0.95251 0.94695 0.99125 0.92917 0.94018 0.90955 0.84079 0.84472 0.80298 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.19 14.32 29.01 0.42 -2.78 16 2 C -0.13 -2.19 9.33 -36.03 -0.34 -2.52 16 3 C 0.08 1.64 5.24 -4.98 -0.03 1.61 16 4 N -0.53 -11.31 4.34 -238.97 -1.04 -12.34 16 5 C 0.19 4.91 4.55 -4.97 -0.02 4.89 16 6 C -0.51 -14.20 8.23 -34.44 -0.28 -14.48 16 7 H 0.06 1.76 7.31 -52.49 -0.38 1.38 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.09 1.67 4.62 -4.98 -0.02 1.65 16 15 C -0.12 -2.03 4.82 -104.53 -0.50 -2.53 16 16 C -0.05 -0.72 8.99 -39.61 -0.36 -1.08 16 17 C -0.14 -2.11 9.99 -39.42 -0.39 -2.51 16 18 C 0.12 1.84 6.48 -39.23 -0.25 1.58 16 19 O -0.32 -3.96 10.43 -19.42 -0.20 -4.16 16 20 C 0.41 3.91 5.98 101.05 0.60 4.51 16 21 F -0.20 -2.40 15.57 2.25 0.04 -2.37 16 22 F -0.20 -2.19 15.60 2.25 0.04 -2.15 16 23 C -0.23 -3.79 8.24 -39.37 -0.32 -4.11 16 24 C 0.16 2.88 7.24 -39.44 -0.29 2.59 16 25 F -0.13 -2.33 16.75 2.25 0.04 -2.29 16 26 H 0.09 1.52 7.84 -52.48 -0.41 1.11 16 27 H 0.09 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.10 1.56 7.28 -52.49 -0.38 1.18 16 29 H 0.09 2.02 6.23 -51.93 -0.32 1.69 16 30 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 31 H 0.04 0.95 6.88 -51.93 -0.36 0.59 16 32 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.04 0.71 7.80 -51.93 -0.41 0.31 16 35 H 0.07 1.18 6.75 -51.93 -0.35 0.83 16 36 H 0.14 2.04 8.00 -52.49 -0.42 1.62 16 37 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.18 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.14 2.13 5.10 -52.49 -0.27 1.87 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -31.73 342.18 -6.69 -38.42 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.54 Total: 0.24 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.89 Total: -11.64 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.30 Total: -38.00 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.20 Total: -4.16 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.73 -6.69 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877546470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.447 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds