Wall clock time and date at job start Tue Mar 31 2020 10:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99966 * 2 1 4 4 N 1.46894 * 109.47083 * 125.12509 * 3 2 1 5 5 C 1.46905 * 111.00170 * 199.66934 * 4 3 2 6 6 C 1.50704 * 109.46988 * 66.04148 * 5 4 3 7 7 H 1.07998 * 120.00178 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99704 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00126 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99705 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47332 * 59.99434 * 10 8 6 12 12 H 1.48499 * 109.47183 * 179.97438 * 10 8 6 13 13 H 1.48510 * 109.46786 * 299.99642 * 10 8 6 14 14 C 1.46904 * 111.00547 * 75.71323 * 4 3 2 15 15 C 1.50693 * 109.47503 * 199.60534 * 14 4 3 16 16 C 1.38254 * 119.95735 * 254.79735 * 15 14 4 17 17 C 1.38139 * 120.07892 * 179.97438 * 16 15 14 18 18 C 1.38764 * 119.99443 * 0.02562 * 17 16 15 19 19 O 1.35899 * 120.04312 * 179.97438 * 18 17 16 20 20 C 1.42905 * 117.00061 * 179.97438 * 19 18 17 21 21 F 1.39892 * 109.47201 * 300.00550 * 20 19 18 22 22 F 1.39901 * 109.46635 * 60.00821 * 20 19 18 23 23 C 1.38675 * 119.91716 * 359.74467 * 18 17 16 24 24 C 1.38381 * 119.91734 * 0.49294 * 23 18 17 25 25 F 1.35101 * 119.99769 * 179.79101 * 24 23 18 26 26 H 1.08004 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.00109 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99931 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47684 * 5.11995 * 3 2 1 30 30 H 1.09007 * 109.47318 * 245.12147 * 3 2 1 31 31 H 1.08999 * 109.47317 * 186.04373 * 5 4 3 32 32 H 1.08997 * 109.46841 * 306.04594 * 5 4 3 33 33 H 0.96996 * 120.00058 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.46732 * 79.60337 * 14 4 3 35 35 H 1.08998 * 109.46916 * 319.61124 * 14 4 3 36 36 H 1.07998 * 119.96080 * 359.97073 * 16 15 14 37 37 H 1.07993 * 120.00134 * 180.02562 * 17 16 15 38 38 H 1.09004 * 109.46648 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.04112 * 180.27418 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9984 1.3307 1.1327 5 6 3.4008 2.7070 1.4523 6 6 2.2062 3.4755 1.9557 7 1 1.2445 2.9901 2.0312 8 6 2.3413 4.7985 2.3200 9 7 3.5125 5.3895 2.2285 10 14 0.8607 5.7509 2.9447 11 1 0.3296 5.0948 4.1664 12 1 1.2674 7.1421 3.2676 13 1 -0.1917 5.7728 1.8972 14 6 4.1716 0.4876 0.8664 15 6 4.8505 0.1458 2.1676 16 6 6.0355 0.7688 2.5125 17 6 6.6597 0.4578 3.7049 18 6 6.0975 -0.4813 4.5579 19 8 6.7110 -0.7884 5.7310 20 6 6.0752 -1.7637 6.5598 21 9 4.7969 -1.3161 6.9099 22 9 5.9716 -2.9720 5.8623 23 6 4.9064 -1.1026 4.2140 24 6 4.2866 -0.7920 3.0163 25 9 3.1284 -1.3994 2.6777 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3588 2.1315 0.0917 30 1 2.6196 1.4036 -0.9323 31 1 4.1728 2.6905 2.2215 32 1 3.7912 3.1887 0.5559 33 1 3.6074 6.3202 2.4844 34 1 4.8679 1.0266 0.2239 35 1 3.8547 -0.4295 0.3700 36 1 6.4738 1.4995 1.8489 37 1 7.5851 0.9455 3.9733 38 1 6.6675 -1.9152 7.4622 39 1 4.4648 -1.8305 4.8784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877546470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:20 Heat of formation + Delta-G solvation = -155.881123 kcal Electronic energy + Delta-G solvation = -26627.871802 eV Core-core repulsion = 22313.814213 eV Total energy + Delta-G solvation = -4314.057589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.33586 -49.86706 -48.33440 -41.03250 -39.27541 -37.88612 -34.95976 -34.18016 -32.06046 -31.69057 -29.27046 -27.81013 -26.53633 -25.50464 -24.08778 -23.17245 -21.94691 -20.49932 -20.23159 -19.39280 -18.90401 -18.50624 -17.81188 -17.31937 -16.98464 -16.75901 -16.54226 -16.17811 -16.06572 -15.57116 -15.51771 -15.37530 -14.94146 -14.73095 -14.67723 -14.65719 -14.38057 -14.03531 -13.85087 -13.45968 -13.34177 -13.11704 -12.96000 -12.75127 -12.63188 -12.42895 -12.31224 -12.15193 -11.95706 -11.62520 -11.25688 -10.58845 -10.23608 -9.98279 -9.38197 -8.97916 -8.18612 -6.26542 0.08370 0.10385 1.39595 1.42159 1.47535 1.50008 1.54845 2.38899 2.44117 2.53726 3.14177 3.18102 3.44638 3.55924 3.65084 3.67509 3.75904 3.87551 4.08946 4.14181 4.36381 4.41263 4.45669 4.48555 4.68049 4.87837 4.92101 4.97396 5.03755 5.05509 5.25175 5.29306 5.36212 5.43704 5.66880 5.77443 5.93447 6.00397 6.08670 6.36355 6.62818 6.88094 7.41845 8.91796 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.004463 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.885827 B = 6271.717027 C = 7303.396520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C 0.086 3.914 4 N -0.536 5.536 5 C 0.211 3.789 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.095 3.905 15 C -0.136 4.136 16 C -0.052 4.052 17 C -0.143 4.143 18 C 0.126 3.874 19 O -0.318 6.318 20 C 0.402 3.598 21 F -0.213 7.213 22 F -0.209 7.209 23 C -0.241 4.241 24 C 0.141 3.859 25 F -0.136 7.136 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.015 0.985 32 H -0.034 1.034 33 H 0.264 0.736 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.243 0.757 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 -15.317 4.887 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.161 4.161 3 C -0.042 4.042 4 N -0.260 5.260 5 C 0.085 3.915 6 C -0.561 4.561 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.784 3.216 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.193 1.193 14 C -0.032 4.032 15 C -0.137 4.137 16 C -0.070 4.070 17 C -0.161 4.161 18 C 0.082 3.918 19 O -0.235 6.235 20 C 0.313 3.687 21 F -0.195 7.195 22 F -0.191 7.191 23 C -0.260 4.260 24 C 0.121 3.879 25 F -0.114 7.114 26 H 0.108 0.892 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.033 0.967 32 H -0.016 1.016 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.168 0.832 37 H 0.182 0.818 38 H 0.259 0.741 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.153 -15.303 5.368 17.725 hybrid contribution -0.832 0.810 -0.439 1.241 sum 6.321 -14.493 4.929 16.562 Atomic orbital electron populations 1.23887 0.95587 1.02201 1.00928 1.22859 0.96291 0.97447 0.99498 1.21138 0.95394 0.96426 0.91198 1.62041 1.13771 1.11976 1.38214 1.19390 0.95435 0.83194 0.93449 1.21398 0.96090 0.95656 1.42980 0.92684 1.25755 0.98715 0.98576 0.95961 1.70041 1.24743 1.12615 1.49461 0.85595 0.79592 0.77448 0.78950 1.20012 1.20583 1.19280 1.20944 0.91914 0.97994 0.92367 1.19989 0.97077 0.97999 0.98655 1.21016 0.93132 0.96666 0.96196 1.20696 1.03123 0.98827 0.93483 1.18551 0.91368 0.95725 0.86174 1.86628 1.49667 1.57904 1.29300 1.24433 0.80116 0.72856 0.91249 1.93091 1.45198 1.89167 1.92075 1.93077 1.96231 1.47527 1.82245 1.21427 0.98492 1.07061 0.99009 1.17249 0.82622 0.94047 0.93959 1.91466 1.46342 1.81357 1.92229 0.89234 0.86556 0.87074 0.91515 0.94505 0.96694 1.01603 0.92719 0.93477 0.89362 0.83234 0.81801 0.74104 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.66 14.32 67.78 0.97 -4.69 16 2 C -0.14 -4.74 9.33 25.65 0.24 -4.50 16 3 C 0.09 3.40 5.24 85.56 0.45 3.85 16 4 N -0.54 -23.48 4.34 -909.95 -3.94 -27.42 16 5 C 0.21 11.12 4.55 85.56 0.39 11.51 16 6 C -0.52 -29.92 8.23 25.60 0.21 -29.71 16 7 H 0.05 3.16 7.31 -2.91 -0.02 3.14 16 8 C 0.01 0.48 5.46 84.66 0.46 0.94 16 9 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 10 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 14 C 0.10 3.46 4.62 85.55 0.40 3.85 16 15 C -0.14 -4.81 4.82 -19.81 -0.10 -4.90 16 16 C -0.05 -1.63 8.99 22.25 0.20 -1.43 16 17 C -0.14 -4.00 9.99 22.37 0.22 -3.78 16 18 C 0.13 3.62 6.48 22.50 0.15 3.76 16 19 O -0.32 -7.17 10.43 -92.42 -0.96 -8.13 16 20 C 0.40 6.63 5.98 113.37 0.68 7.31 16 21 F -0.21 -4.90 15.57 44.97 0.70 -4.20 16 22 F -0.21 -4.18 15.60 44.97 0.70 -3.47 16 23 C -0.24 -7.68 8.24 22.41 0.18 -7.50 16 24 C 0.14 5.05 7.24 22.36 0.16 5.21 16 25 F -0.14 -5.06 16.75 44.97 0.75 -4.30 16 26 H 0.09 2.79 7.84 -2.91 -0.02 2.76 16 27 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.11 3.41 7.28 -2.91 -0.02 3.38 16 29 H 0.07 2.97 6.23 -2.39 -0.01 2.95 16 30 H 0.04 1.38 8.00 -2.38 -0.02 1.36 16 31 H 0.01 0.84 6.88 -2.39 -0.02 0.82 16 32 H -0.03 -1.90 8.12 -2.39 -0.02 -1.92 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.05 1.64 7.80 -2.39 -0.02 1.62 16 35 H 0.09 2.87 6.75 -2.39 -0.02 2.85 16 36 H 0.15 4.33 8.00 -2.91 -0.02 4.31 16 37 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.24 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.15 4.36 5.10 -2.91 -0.01 4.34 16 Total: -1.00 -69.29 342.18 5.25 -64.04 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.08 Total: 11.60 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 4.61 Total: -20.08 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.66 Total: -82.38 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.96 Total: -8.13 kcal Atomic # 9 Polarization: -14.13 SS G_CDS: 2.15 Total: -11.98 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -69.29 5.25 -64.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877546470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.838 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds