Wall clock time and date at job start Tue Mar 31 2020 10:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47518 * 2 1 4 4 N 1.46888 * 109.47264 * 180.08836 * 3 2 1 5 5 C 1.46901 * 111.00188 * 293.29189 * 4 3 2 6 6 C 1.50703 * 109.47053 * 288.38674 * 5 4 3 7 7 C 1.38465 * 120.01741 * 279.12318 * 6 5 4 8 8 F 1.35100 * 120.01986 * 0.03834 * 7 6 5 9 9 C 1.38441 * 119.95761 * 180.02562 * 7 6 5 10 10 C 1.38223 * 120.00759 * 0.02562 * 9 7 6 11 11 C 1.38212 * 120.03191 * 359.67889 * 10 9 7 12 12 C 1.38290 * 120.02081 * 99.14554 * 6 5 4 13 13 Cl 1.73601 * 119.99741 * 359.97438 * 12 6 5 14 14 C 1.46901 * 111.00574 * 57.24610 * 4 3 2 15 15 C 1.53000 * 109.46970 * 72.03692 * 14 4 3 16 16 H 1.09003 * 109.47062 * 53.01031 * 15 14 4 17 17 O 1.42900 * 109.47638 * 293.00706 * 15 14 4 18 18 C 1.50700 * 109.47061 * 173.00648 * 15 14 4 19 19 H 1.07993 * 119.99934 * 359.97438 * 18 15 14 20 20 C 1.37880 * 119.99972 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99818 * 180.02562 * 20 18 15 22 22 Si 1.86793 * 120.00070 * 359.97438 * 20 18 15 23 23 H 1.48501 * 109.47376 * 90.00071 * 22 20 18 24 24 H 1.48499 * 109.47555 * 210.00249 * 22 20 18 25 25 H 1.48507 * 109.47377 * 330.00177 * 22 20 18 26 26 H 1.09003 * 109.47178 * 300.00573 * 1 2 3 27 27 H 1.09004 * 109.47503 * 59.99798 * 1 2 3 28 28 H 1.08999 * 109.47664 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47268 * 240.00129 * 2 1 3 30 30 H 1.09006 * 109.47026 * 120.00019 * 2 1 3 31 31 H 1.08996 * 109.46916 * 60.08263 * 3 2 1 32 32 H 1.09003 * 109.46494 * 300.08697 * 3 2 1 33 33 H 1.08996 * 109.47458 * 168.38517 * 5 4 3 34 34 H 1.09000 * 109.47070 * 48.38306 * 5 4 3 35 35 H 1.08006 * 119.99977 * 180.02562 * 9 7 6 36 36 H 1.07999 * 119.98432 * 179.97438 * 10 9 7 37 37 H 1.08006 * 119.97648 * 180.29560 * 11 10 9 38 38 H 1.08997 * 109.47646 * 192.04096 * 14 4 3 39 39 H 1.09002 * 109.46889 * 312.04518 * 14 4 3 40 40 H 0.96698 * 113.99848 * 299.99832 * 17 15 14 41 41 H 0.96999 * 119.99816 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 -0.0021 5 6 4.0372 0.8995 1.2565 6 6 3.8005 1.8885 2.3687 7 6 4.6571 2.9639 2.5334 8 9 5.7050 3.1276 1.6966 9 6 4.4387 3.8713 3.5559 10 6 3.3667 3.7033 4.4121 11 6 2.5082 2.6332 4.2439 12 6 2.7280 1.7222 3.2258 13 17 1.6535 0.3743 3.0201 14 6 4.0338 0.7011 -1.1566 15 6 3.7995 1.5119 -2.4328 16 1 4.2051 2.5156 -2.3052 17 8 2.3970 1.5947 -2.6939 18 6 4.4870 0.8358 -3.5909 19 1 5.0365 -0.0803 -3.4324 20 6 4.4154 1.3874 -4.8525 21 7 5.0150 0.7970 -5.8632 22 14 3.4656 2.9723 -5.1264 23 1 4.3742 4.1322 -4.9414 24 1 2.9169 2.9885 -6.5062 25 1 2.3504 3.0564 -4.1492 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6780 1.9559 0.8907 32 1 1.6754 1.9568 -0.8893 33 1 5.1070 0.7180 1.1533 34 1 3.5306 -0.0371 1.4892 35 1 5.1062 4.7106 3.6848 36 1 3.1969 4.4112 5.2099 37 1 1.6680 2.5055 4.9104 38 1 5.1025 0.5320 -1.0246 39 1 3.5213 -0.2577 -1.2362 40 1 1.9688 0.7366 -2.8184 41 1 4.9643 1.1849 -6.7508 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929388728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:47 Heat of formation + Delta-G solvation = -87.536377 kcal Electronic energy + Delta-G solvation = -25220.686699 eV Core-core repulsion = 21461.389441 eV Total energy + Delta-G solvation = -3759.297258 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.88033 -40.67272 -39.39650 -37.49159 -37.03871 -34.44205 -34.02881 -32.65087 -31.38129 -30.35480 -27.63970 -27.16664 -24.54951 -23.78560 -23.26716 -22.32818 -20.83357 -19.30301 -18.65214 -17.88123 -17.21144 -16.96830 -16.74334 -16.55768 -16.30759 -16.19191 -15.75447 -15.51830 -15.17099 -14.79381 -14.55241 -14.45231 -14.15937 -14.06967 -13.60801 -13.25251 -13.08315 -12.76101 -12.75381 -12.64559 -12.49383 -12.36528 -12.35938 -12.14792 -12.02109 -11.82965 -11.67297 -11.22631 -11.01911 -10.79013 -10.06345 -9.82419 -9.67391 -9.03016 -8.34512 -6.48439 -0.00170 0.07930 1.03553 1.41124 1.45474 1.75900 2.41577 2.45047 3.03893 3.14274 3.30938 3.58978 3.76654 3.94531 4.00155 4.11709 4.18198 4.25686 4.35045 4.37714 4.48679 4.51266 4.54743 4.61030 4.81900 4.91889 4.95433 5.02427 5.10794 5.13296 5.14995 5.24203 5.25834 5.35693 5.45447 5.49398 5.64963 5.76415 6.07388 6.18865 6.28151 6.63913 7.18840 7.34933 8.79760 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.004661 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.063914 B = 6005.858572 C = 6974.433638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.051 3.949 4 N -0.534 5.534 5 C 0.083 3.917 6 C -0.116 4.116 7 C 0.104 3.896 8 F -0.144 7.144 9 C -0.151 4.151 10 C -0.069 4.069 11 C -0.119 4.119 12 C -0.017 4.017 13 Cl -0.052 7.052 14 C 0.051 3.949 15 C 0.216 3.784 16 H 0.046 0.954 17 O -0.571 6.571 18 C -0.563 4.563 19 H 0.036 0.964 20 C 0.031 3.969 21 N -0.940 5.940 22 Si 0.938 3.062 23 H -0.291 1.291 24 H -0.298 1.298 25 H -0.202 1.202 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.363 0.637 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 3.862 25.311 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C -0.077 4.077 4 N -0.256 5.256 5 C -0.045 4.045 6 C -0.118 4.118 7 C 0.084 3.916 8 F -0.123 7.123 9 C -0.170 4.170 10 C -0.087 4.087 11 C -0.138 4.138 12 C -0.045 4.045 13 Cl -0.022 7.022 14 C -0.076 4.076 15 C 0.158 3.842 16 H 0.064 0.936 17 O -0.378 6.378 18 C -0.601 4.601 19 H 0.054 0.946 20 C -0.169 4.169 21 N -0.580 5.580 22 Si 0.763 3.237 23 H -0.218 1.218 24 H -0.225 1.225 25 H -0.123 1.123 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.177 0.823 36 H 0.198 0.802 37 H 0.182 0.818 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.210 0.790 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.401 4.858 25.109 26.919 hybrid contribution 0.234 -1.297 -1.200 1.782 sum -8.167 3.561 23.909 25.515 Atomic orbital electron populations 1.21586 0.94358 1.01619 1.01942 1.22206 0.97616 0.98477 1.01415 1.22467 0.85822 0.96268 1.03095 1.62225 1.08879 1.53856 1.00677 1.21038 1.00514 0.94813 0.88115 1.19643 0.96056 0.97822 0.98318 1.17717 0.86455 0.96365 0.91065 1.91506 1.55064 1.95102 1.70606 1.21585 1.01064 0.99734 0.94632 1.21387 0.91691 0.97031 0.98582 1.21458 1.01611 0.93648 0.97064 1.20778 0.92737 0.92845 0.98105 1.98374 1.63000 1.44384 1.96491 1.22565 0.98850 0.95522 0.90700 1.19408 0.79376 0.95427 0.90016 0.93583 1.86598 1.23280 1.34473 1.93414 1.21811 1.34030 1.10373 0.93867 0.94606 1.25807 0.94946 1.00583 0.95520 1.70082 1.44958 1.41863 1.01067 0.86001 0.81610 0.78436 0.77673 1.21755 1.22495 1.12324 0.92400 0.92702 0.92522 0.93006 0.91658 0.91548 0.89235 0.91058 0.91872 0.82284 0.80203 0.81778 0.92405 0.93897 0.78998 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.91 71.98 0.71 -2.42 16 2 C -0.16 -4.29 4.51 30.59 0.14 -4.15 16 3 C 0.05 1.56 4.34 86.31 0.37 1.94 16 4 N -0.53 -18.38 4.61 -900.81 -4.16 -22.54 16 5 C 0.08 2.46 4.50 85.56 0.39 2.85 16 6 C -0.12 -3.01 4.82 -19.80 -0.10 -3.11 16 7 C 0.10 2.67 7.25 22.37 0.16 2.84 16 8 F -0.14 -4.52 16.65 44.97 0.75 -3.77 16 9 C -0.15 -2.67 10.03 22.31 0.22 -2.44 16 10 C -0.07 -0.85 10.04 22.26 0.22 -0.63 16 11 C -0.12 -1.75 9.83 22.30 0.22 -1.53 16 12 C -0.02 -0.36 5.47 22.32 0.12 -0.24 16 13 Cl -0.05 -1.04 22.96 -2.72 -0.06 -1.11 16 14 C 0.05 2.05 4.52 86.30 0.39 2.44 16 15 C 0.22 10.11 2.49 29.85 0.07 10.18 16 16 H 0.05 2.33 7.57 -2.39 -0.02 2.32 16 17 O -0.57 -24.47 7.16 -148.98 -1.07 -25.54 16 18 C -0.56 -31.96 9.34 25.60 0.24 -31.72 16 19 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 20 C 0.03 1.82 5.47 84.66 0.46 2.28 16 21 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 22 Si 0.94 46.17 26.99 68.60 1.85 48.02 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.20 -9.36 5.31 99.48 0.53 -8.83 16 26 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.57 5.73 -2.39 -0.01 1.56 16 30 H 0.07 1.69 4.24 -2.38 -0.01 1.68 16 31 H 0.07 1.92 5.80 -2.39 -0.01 1.91 16 32 H 0.09 3.14 5.53 -2.39 -0.01 3.13 16 33 H 0.07 2.25 7.51 -2.39 -0.02 2.23 16 34 H 0.06 1.77 4.79 -2.39 -0.01 1.76 16 35 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.06 2.43 7.72 -2.39 -0.02 2.41 16 39 H 0.04 1.66 5.65 -2.39 -0.01 1.65 16 40 H 0.36 14.04 8.66 -74.06 -0.64 13.40 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -68.22 332.41 1.50 -66.73 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.25 Total: 20.78 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 3.63 Total: -23.71 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -3.86 Total: -81.40 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.07 Total: -25.54 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.75 Total: -3.77 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.85 Total: 48.02 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.06 Total: -1.11 kcal Total: -68.22 1.50 -66.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929388728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.808 kcal (2) G-P(sol) polarization free energy of solvation -68.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds