Wall clock time and date at job start Tue Mar 31 2020 11:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47402 * 2 1 4 4 C 1.34777 * 120.00138 * 83.59518 * 3 2 1 5 5 O 1.21685 * 120.00622 * 184.71794 * 4 3 2 6 6 C 1.46725 * 119.99755 * 4.72168 * 4 3 2 7 7 O 1.35343 * 126.64572 * 352.92839 * 6 4 3 8 8 C 1.33665 * 107.68611 * 180.25939 * 7 6 4 9 9 N 1.30620 * 109.15366 * 359.75708 * 8 7 6 10 10 C 1.33689 * 108.99237 * 0.02562 * 9 8 7 11 11 C 1.50710 * 126.27258 * 179.97438 * 10 9 8 12 12 F 1.39899 * 109.46929 * 30.01553 * 11 10 9 13 13 F 1.39889 * 109.47268 * 150.01801 * 11 10 9 14 14 C 1.46502 * 120.00069 * 263.59832 * 3 2 1 15 15 C 1.53943 * 113.73989 * 222.80229 * 14 3 2 16 16 N 1.47811 * 86.03783 * 222.08318 * 15 14 3 17 17 C 1.36935 * 134.45919 * 204.64601 * 16 15 14 18 18 H 1.07999 * 120.00010 * 179.86872 * 17 16 15 19 19 C 1.38817 * 119.99955 * 359.86499 * 17 16 15 20 20 N 1.31620 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47135 * 90.00454 * 21 19 17 23 23 H 1.48506 * 109.47216 * 210.00202 * 21 19 17 24 24 H 1.48496 * 109.47668 * 330.00269 * 21 19 17 25 25 C 1.47583 * 91.04850 * 24.55080 * 16 15 14 26 26 H 1.08994 * 109.46748 * 59.99692 * 1 2 3 27 27 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46826 * 299.99954 * 1 2 3 29 29 H 1.09002 * 109.46826 * 240.00046 * 2 1 3 30 30 H 1.09003 * 109.47265 * 120.00468 * 2 1 3 31 31 H 1.08004 * 125.42257 * 179.71821 * 8 7 6 32 32 H 1.09001 * 109.46528 * 270.02179 * 11 10 9 33 33 H 1.08996 * 112.94585 * 354.39587 * 14 3 2 34 34 H 1.08997 * 113.77243 * 336.34898 * 15 14 3 35 35 H 1.09000 * 113.76784 * 107.74725 * 15 14 3 36 36 H 0.97002 * 119.99595 * 179.97438 * 20 19 17 37 37 H 1.09000 * 113.76787 * 221.14967 * 25 16 15 38 38 H 1.09000 * 113.76697 * 89.75709 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1203 2.0599 1.1599 5 8 2.4436 3.2330 1.1521 6 6 1.8416 1.3843 2.4322 7 8 1.3473 0.1345 2.5918 8 6 1.2380 -0.0944 3.9041 9 7 1.6488 0.9587 4.5586 10 6 2.0325 1.8930 3.6826 11 6 2.5719 3.2601 4.0162 12 9 3.2452 3.2095 5.2414 13 9 3.4578 3.6692 3.0138 14 6 2.3960 2.0246 -1.2608 15 6 3.6970 2.8430 -1.1737 16 7 2.9912 3.8589 -1.9828 17 6 3.3913 4.8558 -2.8321 18 1 2.6552 5.4800 -3.3168 19 6 4.7429 5.0641 -3.0701 20 7 5.6400 4.3030 -2.4798 21 14 5.2886 6.4235 -4.2292 22 1 5.4844 7.6795 -3.4615 23 1 6.5664 6.0364 -4.8794 24 1 4.2489 6.6353 -5.2680 25 6 1.6830 3.3660 -1.5099 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.8684 -1.0050 4.3521 32 1 1.7471 3.9695 4.0839 33 1 2.3615 1.3446 -2.1120 34 1 3.9398 3.1761 -0.1647 35 1 4.5415 2.3813 -1.6853 36 1 6.5845 4.4483 -2.6464 37 1 0.9225 3.3212 -2.2895 38 1 1.3329 3.8532 -0.5998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951761123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:14 Heat of formation + Delta-G solvation = -23.756604 kcal Electronic energy + Delta-G solvation = -27675.082323 eV Core-core repulsion = 23386.674045 eV Total energy + Delta-G solvation = -4288.408278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.79753 -46.78296 -43.79169 -40.07957 -37.00861 -35.97536 -34.98768 -32.13026 -31.24479 -30.22297 -27.75045 -26.73307 -24.71779 -24.50310 -23.39066 -23.12822 -21.89715 -20.47597 -19.26353 -17.93660 -17.73968 -16.99951 -16.88269 -16.75653 -16.56161 -15.84643 -15.68740 -15.08030 -14.59829 -14.55961 -14.29581 -13.75369 -13.67585 -13.51213 -13.17227 -12.99533 -12.75162 -12.44519 -12.33810 -11.94818 -11.72190 -11.46653 -11.37419 -11.32618 -11.18479 -10.94309 -10.82769 -10.60163 -10.16853 -9.98072 -9.69520 -9.45656 -9.35989 -8.64790 -8.25145 -6.76188 -5.68642 -2.99870 0.52507 2.03252 2.14005 3.03081 3.10549 3.26918 3.44898 3.49475 3.51154 3.91606 4.19760 4.31053 4.54439 4.78571 4.88055 4.95300 5.10499 5.13073 5.25269 5.29898 5.36103 5.54803 5.59126 5.63872 5.70900 5.76502 5.79330 6.12845 6.29924 6.48805 6.56421 6.88955 7.11411 7.32098 7.46715 7.61264 7.63990 8.04707 8.20523 9.12130 9.78557 10.67976 11.48680 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.004493 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.265731 B = 6230.707548 C = 7476.980984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.587 5.587 4 C 0.584 3.416 5 O -0.462 6.462 6 C -0.040 4.040 7 O -0.176 6.176 8 C 0.188 3.812 9 N -0.467 5.467 10 C -0.023 4.023 11 C 0.355 3.645 12 F -0.193 7.193 13 F -0.160 7.160 14 C 0.088 3.912 15 C 0.155 3.845 16 N -0.602 5.602 17 C -0.218 4.218 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.113 3.887 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.259 0.741 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.253 0.747 37 H 0.039 0.961 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.891 -13.366 11.704 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.320 5.320 4 C 0.368 3.632 5 O -0.336 6.336 6 C -0.098 4.098 7 O -0.061 6.061 8 C -0.038 4.038 9 N -0.194 5.194 10 C -0.148 4.148 11 C 0.301 3.699 12 F -0.174 7.174 13 F -0.140 7.140 14 C -0.014 4.014 15 C 0.029 3.971 16 N -0.328 5.328 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.014 4.014 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.274 0.726 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.426 -12.505 12.087 20.809 hybrid contribution 0.312 0.344 -1.008 1.110 sum -11.114 -12.161 11.079 19.853 Atomic orbital electron populations 1.22171 0.95664 1.01983 1.02429 1.21795 0.94686 0.82781 1.03370 1.48065 1.63344 1.13751 1.06792 1.16515 0.79792 0.86167 0.80735 1.91082 1.44690 1.13382 1.84402 1.23547 1.04891 0.83812 0.97502 1.84817 1.62496 1.29685 1.29150 1.28403 0.98380 0.99950 0.77056 1.70194 1.14777 1.00368 1.34096 1.22490 1.04709 0.98512 0.89047 1.19328 0.87993 0.89940 0.72660 1.93015 1.82765 1.97223 1.44420 1.93239 1.70518 1.90587 1.59702 1.24287 1.00670 0.93576 0.82882 1.22756 0.92076 0.86356 0.95916 1.45659 1.00513 1.37568 1.49064 1.18975 0.91251 1.07659 1.16740 0.90267 1.24775 0.95534 0.99598 1.00485 1.69826 1.00250 1.40504 1.46058 0.86127 0.77902 0.81566 0.80199 1.21622 1.21695 1.20669 1.22918 0.90754 0.90824 0.96933 0.91975 0.91623 0.92902 0.89621 0.90077 0.72564 0.85391 0.87304 0.92609 0.91278 0.93696 0.94332 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.77 37.16 0.36 -1.15 16 2 C 0.10 1.05 5.74 -4.04 -0.02 1.03 16 3 N -0.59 -9.06 2.75 -169.43 -0.47 -9.52 16 4 C 0.58 9.87 6.88 -12.83 -0.09 9.79 16 5 O -0.46 -9.56 9.09 5.20 0.05 -9.51 16 6 C -0.04 -0.56 6.57 -36.84 -0.24 -0.80 16 7 O -0.18 -1.78 6.40 4.42 0.03 -1.75 16 8 C 0.19 1.52 13.21 52.25 0.69 2.21 16 9 N -0.47 -5.64 11.21 -10.88 -0.12 -5.76 16 10 C -0.02 -0.32 6.77 -82.46 -0.56 -0.88 16 11 C 0.36 5.13 5.57 36.01 0.20 5.34 16 12 F -0.19 -2.90 17.29 2.25 0.04 -2.86 16 13 F -0.16 -2.95 13.71 2.25 0.03 -2.92 16 14 C 0.09 1.66 4.60 -70.15 -0.32 1.34 16 15 C 0.15 3.82 6.78 -2.84 -0.02 3.80 16 16 N -0.60 -16.04 3.70 -177.88 -0.66 -16.70 16 17 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -28.17 11.39 55.49 0.63 -27.54 16 21 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.11 2.42 8.27 -2.97 -0.02 2.39 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.52 7.17 -51.93 -0.37 0.15 16 29 H 0.09 0.83 7.86 -51.93 -0.41 0.42 16 30 H 0.08 0.81 5.37 -51.93 -0.28 0.53 16 31 H 0.26 0.55 8.06 -52.48 -0.42 0.13 16 32 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.11 1.85 7.90 -51.93 -0.41 1.44 16 34 H 0.06 1.51 5.69 -51.93 -0.30 1.21 16 35 H 0.07 1.86 7.16 -51.93 -0.37 1.48 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 1.10 6.31 -51.93 -0.33 0.77 16 LS Contribution 321.03 15.07 4.84 4.84 Total: -1.00 -36.04 321.03 -5.06 -41.10 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -4.12 Total: -3.35 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: -0.28 Total: 16.26 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.61 Total: -59.52 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.07 Total: -5.78 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.04 -5.06 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951761123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.348 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds