Wall clock time and date at job start Tue Mar 31 2020 11:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47402 * 2 1 4 4 C 1.34777 * 120.00138 * 83.59518 * 3 2 1 5 5 O 1.21685 * 120.00622 * 184.71794 * 4 3 2 6 6 C 1.46725 * 119.99755 * 4.72168 * 4 3 2 7 7 O 1.35343 * 126.64572 * 352.92839 * 6 4 3 8 8 C 1.33665 * 107.68611 * 180.25939 * 7 6 4 9 9 N 1.30620 * 109.15366 * 359.75708 * 8 7 6 10 10 C 1.33689 * 108.99237 * 0.02562 * 9 8 7 11 11 C 1.50710 * 126.27258 * 179.97438 * 10 9 8 12 12 F 1.39899 * 109.46929 * 30.01553 * 11 10 9 13 13 F 1.39889 * 109.47268 * 150.01801 * 11 10 9 14 14 C 1.46502 * 120.00069 * 263.59832 * 3 2 1 15 15 C 1.53943 * 113.73989 * 222.80229 * 14 3 2 16 16 N 1.47811 * 86.03783 * 222.08318 * 15 14 3 17 17 C 1.36935 * 134.45919 * 204.64601 * 16 15 14 18 18 H 1.07999 * 120.00010 * 179.86872 * 17 16 15 19 19 C 1.38817 * 119.99955 * 359.86499 * 17 16 15 20 20 N 1.31620 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47135 * 90.00454 * 21 19 17 23 23 H 1.48506 * 109.47216 * 210.00202 * 21 19 17 24 24 H 1.48496 * 109.47668 * 330.00269 * 21 19 17 25 25 C 1.47583 * 91.04850 * 24.55080 * 16 15 14 26 26 H 1.08994 * 109.46748 * 59.99692 * 1 2 3 27 27 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46826 * 299.99954 * 1 2 3 29 29 H 1.09002 * 109.46826 * 240.00046 * 2 1 3 30 30 H 1.09003 * 109.47265 * 120.00468 * 2 1 3 31 31 H 1.08004 * 125.42257 * 179.71821 * 8 7 6 32 32 H 1.09001 * 109.46528 * 270.02179 * 11 10 9 33 33 H 1.08996 * 112.94585 * 354.39587 * 14 3 2 34 34 H 1.08997 * 113.77243 * 336.34898 * 15 14 3 35 35 H 1.09000 * 113.76784 * 107.74725 * 15 14 3 36 36 H 0.97002 * 119.99595 * 179.97438 * 20 19 17 37 37 H 1.09000 * 113.76787 * 221.14967 * 25 16 15 38 38 H 1.09000 * 113.76697 * 89.75709 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1203 2.0599 1.1599 5 8 2.4436 3.2330 1.1521 6 6 1.8416 1.3843 2.4322 7 8 1.3473 0.1345 2.5918 8 6 1.2380 -0.0944 3.9041 9 7 1.6488 0.9587 4.5586 10 6 2.0325 1.8930 3.6826 11 6 2.5719 3.2601 4.0162 12 9 3.2452 3.2095 5.2414 13 9 3.4578 3.6692 3.0138 14 6 2.3960 2.0246 -1.2608 15 6 3.6970 2.8430 -1.1737 16 7 2.9912 3.8589 -1.9828 17 6 3.3913 4.8558 -2.8321 18 1 2.6552 5.4800 -3.3168 19 6 4.7429 5.0641 -3.0701 20 7 5.6400 4.3030 -2.4798 21 14 5.2886 6.4235 -4.2292 22 1 5.4844 7.6795 -3.4615 23 1 6.5664 6.0364 -4.8794 24 1 4.2489 6.6353 -5.2680 25 6 1.6830 3.3660 -1.5099 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.8684 -1.0050 4.3521 32 1 1.7471 3.9695 4.0839 33 1 2.3615 1.3446 -2.1120 34 1 3.9398 3.1761 -0.1647 35 1 4.5415 2.3813 -1.6853 36 1 6.5845 4.4483 -2.6464 37 1 0.9225 3.3212 -2.2895 38 1 1.3329 3.8532 -0.5998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951761123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:13 Heat of formation + Delta-G solvation = -51.421294 kcal Electronic energy + Delta-G solvation = -27676.281954 eV Core-core repulsion = 23386.674045 eV Total energy + Delta-G solvation = -4289.607909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01761 -48.03476 -44.67627 -41.48107 -38.65305 -37.09797 -36.02629 -34.17493 -32.27939 -31.34255 -29.46402 -28.05765 -26.57395 -25.80082 -24.71769 -24.02587 -23.07529 -21.87521 -20.67306 -18.94884 -18.86659 -18.70554 -18.12969 -17.97168 -17.74585 -17.20650 -16.81379 -16.75758 -16.14309 -15.85223 -15.42922 -15.37855 -14.82972 -14.61310 -14.47925 -14.30425 -14.13956 -14.00788 -13.60770 -13.37478 -13.01492 -12.91982 -12.83388 -12.70658 -12.52248 -12.38033 -12.13233 -12.01940 -11.91964 -11.65485 -11.48365 -11.18240 -10.70013 -10.36852 -9.61151 -8.87798 -7.89294 -5.22558 -0.46392 1.16087 1.21475 1.44173 1.47896 1.56068 1.83473 1.92687 2.35318 2.49922 2.96755 3.18065 3.27884 3.33806 3.51108 3.75960 3.80910 3.96844 4.05421 4.12367 4.24379 4.29759 4.40881 4.56189 4.61485 4.80771 4.85582 4.96310 5.02831 5.08455 5.24655 5.25729 5.41962 5.50306 5.82360 5.92545 6.17710 6.36399 6.91863 6.95363 7.61309 8.57678 9.28116 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.004493 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.265731 B = 6230.707548 C = 7476.980984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.091 3.909 3 N -0.586 5.586 4 C 0.580 3.420 5 O -0.512 6.512 6 C -0.058 4.058 7 O -0.165 6.165 8 C 0.232 3.768 9 N -0.501 5.501 10 C -0.024 4.024 11 C 0.345 3.655 12 F -0.198 7.198 13 F -0.188 7.188 14 C 0.127 3.873 15 C 0.152 3.848 16 N -0.631 5.631 17 C -0.233 4.233 18 H 0.085 0.915 19 C -0.068 4.068 20 N -0.955 5.955 21 Si 0.981 3.019 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.263 1.263 25 C 0.115 3.885 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.321 0.679 32 H 0.156 0.844 33 H 0.136 0.864 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.247 0.753 37 H 0.060 0.940 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 -15.867 11.971 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.030 4.030 3 N -0.318 5.318 4 C 0.366 3.634 5 O -0.389 6.389 6 C -0.116 4.116 7 O -0.051 6.051 8 C 0.007 3.993 9 N -0.228 5.228 10 C -0.148 4.148 11 C 0.290 3.710 12 F -0.180 7.180 13 F -0.169 7.169 14 C 0.023 3.977 15 C 0.026 3.974 16 N -0.358 5.358 17 C -0.361 4.361 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.604 5.604 21 Si 0.809 3.191 22 H -0.219 1.219 23 H -0.218 1.218 24 H -0.187 1.187 25 C -0.011 4.011 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.335 0.665 32 H 0.173 0.827 33 H 0.154 0.846 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.777 -15.054 12.373 23.865 hybrid contribution 0.933 0.998 -0.916 1.645 sum -12.844 -14.056 11.457 22.221 Atomic orbital electron populations 1.22115 0.93917 1.03773 1.01654 1.22150 0.96013 0.79915 1.04918 1.48028 1.63084 1.15446 1.05192 1.16851 0.78796 0.85842 0.81915 1.91058 1.46707 1.15658 1.85444 1.22687 1.07601 0.85452 0.95848 1.84808 1.62250 1.27732 1.30311 1.29828 0.93645 1.00012 0.75769 1.70245 1.16956 1.01267 1.34360 1.22389 1.04334 0.98428 0.89630 1.19744 0.87943 0.91622 0.71641 1.92991 1.83028 1.97355 1.44588 1.93181 1.71630 1.91060 1.61048 1.23576 0.95755 0.93172 0.85151 1.22541 0.93840 0.87465 0.93566 1.46069 1.03097 1.37577 1.49028 1.19424 0.91727 1.08175 1.16812 0.89750 1.25670 0.95643 1.02196 1.02580 1.70043 1.00076 1.42342 1.47907 0.85041 0.77556 0.78159 0.78346 1.21866 1.21781 1.18707 1.22983 0.89525 0.91808 0.96761 0.92837 0.88444 0.93638 0.87914 0.88748 0.66493 0.82736 0.84640 0.95629 0.94415 0.94369 0.92141 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.77 71.98 0.70 -1.60 16 2 C 0.09 1.69 5.74 86.38 0.50 2.19 16 3 N -0.59 -17.55 2.75 -808.16 -2.22 -19.77 16 4 C 0.58 19.79 6.88 86.46 0.60 20.39 16 5 O -0.51 -22.29 9.09 -4.30 -0.04 -22.33 16 6 C -0.06 -1.55 6.57 24.05 0.16 -1.39 16 7 O -0.16 -2.75 6.40 -7.08 -0.05 -2.79 16 8 C 0.23 2.69 13.21 130.42 1.72 4.41 16 9 N -0.50 -10.80 11.21 -303.11 -3.40 -14.20 16 10 C -0.02 -0.65 6.77 41.84 0.28 -0.37 16 11 C 0.34 10.22 5.57 71.24 0.40 10.62 16 12 F -0.20 -6.05 17.29 44.97 0.78 -5.28 16 13 F -0.19 -7.42 13.71 44.97 0.62 -6.80 16 14 C 0.13 4.75 4.60 46.75 0.21 4.97 16 15 C 0.15 7.85 6.78 86.44 0.59 8.43 16 16 N -0.63 -34.61 3.70 -716.70 -2.65 -37.27 16 17 C -0.23 -13.80 10.70 84.03 0.90 -12.90 16 18 H 0.08 4.75 7.83 -2.91 -0.02 4.72 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 20 N -0.95 -60.93 11.39 21.65 0.25 -60.69 16 21 Si 0.98 47.76 29.55 68.60 2.03 49.78 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.12 4.96 8.27 86.48 0.72 5.68 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 0.75 7.17 -2.39 -0.02 0.73 16 29 H 0.10 1.60 7.86 -2.39 -0.02 1.58 16 30 H 0.09 1.55 5.37 -2.39 -0.01 1.53 16 31 H 0.32 -0.91 8.06 -2.91 -0.02 -0.93 16 32 H 0.16 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.14 4.36 7.90 -2.39 -0.02 4.34 16 34 H 0.03 1.49 5.69 -2.39 -0.01 1.48 16 35 H 0.04 2.14 7.16 -2.39 -0.02 2.12 16 36 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.74 6.31 -2.39 -0.02 1.73 16 Total: -1.00 -84.75 321.03 3.66 -81.09 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: 1.11 Total: 1.44 kcal Atomic # 6 Polarization: 29.57 SS G_CDS: 7.24 Total: 36.81 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -8.03 Total: -131.92 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.08 Total: -25.12 kcal Atomic # 9 Polarization: -13.47 SS G_CDS: 1.39 Total: -12.08 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -84.75 3.66 -81.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951761123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.667 kcal (2) G-P(sol) polarization free energy of solvation -84.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds