Wall clock time and date at job start Tue Mar 31 2020 11:15:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46494 * 109.47402 * 2 1
4 4 C 1.34777 * 120.00138 * 83.59518 * 3 2 1
5 5 O 1.21685 * 120.00622 * 184.71794 * 4 3 2
6 6 C 1.46725 * 119.99755 * 4.72168 * 4 3 2
7 7 O 1.35343 * 126.64572 * 352.92839 * 6 4 3
8 8 C 1.33665 * 107.68611 * 180.25939 * 7 6 4
9 9 N 1.30620 * 109.15366 * 359.75708 * 8 7 6
10 10 C 1.33689 * 108.99237 * 0.02562 * 9 8 7
11 11 C 1.50710 * 126.27258 * 179.97438 * 10 9 8
12 12 F 1.39899 * 109.46929 * 30.01553 * 11 10 9
13 13 F 1.39889 * 109.47268 * 150.01801 * 11 10 9
14 14 C 1.46502 * 120.00069 * 263.59832 * 3 2 1
15 15 C 1.53943 * 113.73989 * 222.80229 * 14 3 2
16 16 N 1.47811 * 86.03783 * 222.08318 * 15 14 3
17 17 C 1.36935 * 134.45919 * 204.64601 * 16 15 14
18 18 H 1.07999 * 120.00010 * 179.86872 * 17 16 15
19 19 C 1.38817 * 119.99955 * 359.86499 * 17 16 15
20 20 N 1.31620 * 119.99926 * 0.02562 * 19 17 16
21 21 Si 1.86793 * 119.99912 * 179.97438 * 19 17 16
22 22 H 1.48505 * 109.47135 * 90.00454 * 21 19 17
23 23 H 1.48506 * 109.47216 * 210.00202 * 21 19 17
24 24 H 1.48496 * 109.47668 * 330.00269 * 21 19 17
25 25 C 1.47583 * 91.04850 * 24.55080 * 16 15 14
26 26 H 1.08994 * 109.46748 * 59.99692 * 1 2 3
27 27 H 1.09000 * 109.47117 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.46826 * 299.99954 * 1 2 3
29 29 H 1.09002 * 109.46826 * 240.00046 * 2 1 3
30 30 H 1.09003 * 109.47265 * 120.00468 * 2 1 3
31 31 H 1.08004 * 125.42257 * 179.71821 * 8 7 6
32 32 H 1.09001 * 109.46528 * 270.02179 * 11 10 9
33 33 H 1.08996 * 112.94585 * 354.39587 * 14 3 2
34 34 H 1.08997 * 113.77243 * 336.34898 * 15 14 3
35 35 H 1.09000 * 113.76784 * 107.74725 * 15 14 3
36 36 H 0.97002 * 119.99595 * 179.97438 * 20 19 17
37 37 H 1.09000 * 113.76787 * 221.14967 * 25 16 15
38 38 H 1.09000 * 113.76697 * 89.75709 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3811 0.0000
4 6 2.1203 2.0599 1.1599
5 8 2.4436 3.2330 1.1521
6 6 1.8416 1.3843 2.4322
7 8 1.3473 0.1345 2.5918
8 6 1.2380 -0.0944 3.9041
9 7 1.6488 0.9587 4.5586
10 6 2.0325 1.8930 3.6826
11 6 2.5719 3.2601 4.0162
12 9 3.2452 3.2095 5.2414
13 9 3.4578 3.6692 3.0138
14 6 2.3960 2.0246 -1.2608
15 6 3.6970 2.8430 -1.1737
16 7 2.9912 3.8589 -1.9828
17 6 3.3913 4.8558 -2.8321
18 1 2.6552 5.4800 -3.3168
19 6 4.7429 5.0641 -3.0701
20 7 5.6400 4.3030 -2.4798
21 14 5.2886 6.4235 -4.2292
22 1 5.4844 7.6795 -3.4615
23 1 6.5664 6.0364 -4.8794
24 1 4.2489 6.6353 -5.2680
25 6 1.6830 3.3660 -1.5099
26 1 -0.3632 0.5139 -0.8899
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8934 -0.5139 0.8900
31 1 0.8684 -1.0050 4.3521
32 1 1.7471 3.9695 4.0839
33 1 2.3615 1.3446 -2.1120
34 1 3.9398 3.1761 -0.1647
35 1 4.5415 2.3813 -1.6853
36 1 6.5845 4.4483 -2.6464
37 1 0.9225 3.3212 -2.2895
38 1 1.3329 3.8532 -0.5998
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000951761123.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:13
Heat of formation + Delta-G solvation = -51.421294 kcal
Electronic energy + Delta-G solvation = -27676.281954 eV
Core-core repulsion = 23386.674045 eV
Total energy + Delta-G solvation = -4289.607909 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.118 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-50.01761 -48.03476 -44.67627 -41.48107 -38.65305 -37.09797 -36.02629 -34.17493
-32.27939 -31.34255 -29.46402 -28.05765 -26.57395 -25.80082 -24.71769 -24.02587
-23.07529 -21.87521 -20.67306 -18.94884 -18.86659 -18.70554 -18.12969 -17.97168
-17.74585 -17.20650 -16.81379 -16.75758 -16.14309 -15.85223 -15.42922 -15.37855
-14.82972 -14.61310 -14.47925 -14.30425 -14.13956 -14.00788 -13.60770 -13.37478
-13.01492 -12.91982 -12.83388 -12.70658 -12.52248 -12.38033 -12.13233 -12.01940
-11.91964 -11.65485 -11.48365 -11.18240 -10.70013 -10.36852 -9.61151 -8.87798
-7.89294 -5.22558 -0.46392 1.16087 1.21475 1.44173 1.47896 1.56068
1.83473 1.92687 2.35318 2.49922 2.96755 3.18065 3.27884 3.33806
3.51108 3.75960 3.80910 3.96844 4.05421 4.12367 4.24379 4.29759
4.40881 4.56189 4.61485 4.80771 4.85582 4.96310 5.02831 5.08455
5.24655 5.25729 5.41962 5.50306 5.82360 5.92545 6.17710 6.36399
6.91863 6.95363 7.61309 8.57678 9.28116
Molecular weight = 315.12amu
Principal moments of inertia in cm(-1)
A = 0.017213 B = 0.004493 C = 0.003744
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1626.265731 B = 6230.707548 C = 7476.980984
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.091 3.909
3 N -0.586 5.586
4 C 0.580 3.420
5 O -0.512 6.512
6 C -0.058 4.058
7 O -0.165 6.165
8 C 0.232 3.768
9 N -0.501 5.501
10 C -0.024 4.024
11 C 0.345 3.655
12 F -0.198 7.198
13 F -0.188 7.188
14 C 0.127 3.873
15 C 0.152 3.848
16 N -0.631 5.631
17 C -0.233 4.233
18 H 0.085 0.915
19 C -0.068 4.068
20 N -0.955 5.955
21 Si 0.981 3.019
22 H -0.291 1.291
23 H -0.291 1.291
24 H -0.263 1.263
25 C 0.115 3.885
26 H 0.052 0.948
27 H 0.097 0.903
28 H 0.044 0.956
29 H 0.103 0.897
30 H 0.095 0.905
31 H 0.321 0.679
32 H 0.156 0.844
33 H 0.136 0.864
34 H 0.026 0.974
35 H 0.038 0.962
36 H 0.247 0.753
37 H 0.060 0.940
38 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.184 -15.867 11.971 24.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.030 4.030
3 N -0.318 5.318
4 C 0.366 3.634
5 O -0.389 6.389
6 C -0.116 4.116
7 O -0.051 6.051
8 C 0.007 3.993
9 N -0.228 5.228
10 C -0.148 4.148
11 C 0.290 3.710
12 F -0.180 7.180
13 F -0.169 7.169
14 C 0.023 3.977
15 C 0.026 3.974
16 N -0.358 5.358
17 C -0.361 4.361
18 H 0.103 0.897
19 C -0.261 4.261
20 N -0.604 5.604
21 Si 0.809 3.191
22 H -0.219 1.219
23 H -0.218 1.218
24 H -0.187 1.187
25 C -0.011 4.011
26 H 0.072 0.928
27 H 0.116 0.884
28 H 0.064 0.936
29 H 0.121 0.879
30 H 0.113 0.887
31 H 0.335 0.665
32 H 0.173 0.827
33 H 0.154 0.846
34 H 0.044 0.956
35 H 0.056 0.944
36 H 0.056 0.944
37 H 0.079 0.921
38 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -13.777 -15.054 12.373 23.865
hybrid contribution 0.933 0.998 -0.916 1.645
sum -12.844 -14.056 11.457 22.221
Atomic orbital electron populations
1.22115 0.93917 1.03773 1.01654 1.22150 0.96013 0.79915 1.04918
1.48028 1.63084 1.15446 1.05192 1.16851 0.78796 0.85842 0.81915
1.91058 1.46707 1.15658 1.85444 1.22687 1.07601 0.85452 0.95848
1.84808 1.62250 1.27732 1.30311 1.29828 0.93645 1.00012 0.75769
1.70245 1.16956 1.01267 1.34360 1.22389 1.04334 0.98428 0.89630
1.19744 0.87943 0.91622 0.71641 1.92991 1.83028 1.97355 1.44588
1.93181 1.71630 1.91060 1.61048 1.23576 0.95755 0.93172 0.85151
1.22541 0.93840 0.87465 0.93566 1.46069 1.03097 1.37577 1.49028
1.19424 0.91727 1.08175 1.16812 0.89750 1.25670 0.95643 1.02196
1.02580 1.70043 1.00076 1.42342 1.47907 0.85041 0.77556 0.78159
0.78346 1.21866 1.21781 1.18707 1.22983 0.89525 0.91808 0.96761
0.92837 0.88444 0.93638 0.87914 0.88748 0.66493 0.82736 0.84640
0.95629 0.94415 0.94369 0.92141 0.94417
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.30 9.77 71.98 0.70 -1.60 16
2 C 0.09 1.69 5.74 86.38 0.50 2.19 16
3 N -0.59 -17.55 2.75 -808.16 -2.22 -19.77 16
4 C 0.58 19.79 6.88 86.46 0.60 20.39 16
5 O -0.51 -22.29 9.09 -4.30 -0.04 -22.33 16
6 C -0.06 -1.55 6.57 24.05 0.16 -1.39 16
7 O -0.16 -2.75 6.40 -7.08 -0.05 -2.79 16
8 C 0.23 2.69 13.21 130.42 1.72 4.41 16
9 N -0.50 -10.80 11.21 -303.11 -3.40 -14.20 16
10 C -0.02 -0.65 6.77 41.84 0.28 -0.37 16
11 C 0.34 10.22 5.57 71.24 0.40 10.62 16
12 F -0.20 -6.05 17.29 44.97 0.78 -5.28 16
13 F -0.19 -7.42 13.71 44.97 0.62 -6.80 16
14 C 0.13 4.75 4.60 46.75 0.21 4.97 16
15 C 0.15 7.85 6.78 86.44 0.59 8.43 16
16 N -0.63 -34.61 3.70 -716.70 -2.65 -37.27 16
17 C -0.23 -13.80 10.70 84.03 0.90 -12.90 16
18 H 0.08 4.75 7.83 -2.91 -0.02 4.72 16
19 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16
20 N -0.95 -60.93 11.39 21.65 0.25 -60.69 16
21 Si 0.98 47.76 29.55 68.60 2.03 49.78 16
22 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16
23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16
24 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16
25 C 0.12 4.96 8.27 86.48 0.72 5.68 16
26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
28 H 0.04 0.75 7.17 -2.39 -0.02 0.73 16
29 H 0.10 1.60 7.86 -2.39 -0.02 1.58 16
30 H 0.09 1.55 5.37 -2.39 -0.01 1.53 16
31 H 0.32 -0.91 8.06 -2.91 -0.02 -0.93 16
32 H 0.16 3.60 8.14 -2.39 -0.02 3.58 16
33 H 0.14 4.36 7.90 -2.39 -0.02 4.34 16
34 H 0.03 1.49 5.69 -2.39 -0.01 1.48 16
35 H 0.04 2.14 7.16 -2.39 -0.02 2.12 16
36 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16
37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16
38 H 0.04 1.74 6.31 -2.39 -0.02 1.73 16
Total: -1.00 -84.75 321.03 3.66 -81.09
By element:
Atomic # 1 Polarization: 0.32 SS G_CDS: 1.11 Total: 1.44 kcal
Atomic # 6 Polarization: 29.57 SS G_CDS: 7.24 Total: 36.81 kcal
Atomic # 7 Polarization: -123.90 SS G_CDS: -8.03 Total: -131.92 kcal
Atomic # 8 Polarization: -25.03 SS G_CDS: -0.08 Total: -25.12 kcal
Atomic # 9 Polarization: -13.47 SS G_CDS: 1.39 Total: -12.08 kcal
Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal
Total: -84.75 3.66 -81.09 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000951761123.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.667 kcal
(2) G-P(sol) polarization free energy of solvation -84.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.082 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds