Wall clock time and date at job start Tue Mar 31 2020 11:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21676 * 120.00299 * 359.97438 * 5 4 2 7 7 C 1.46726 * 119.99780 * 179.97438 * 5 4 2 8 8 O 1.35346 * 126.64492 * 0.02562 * 7 5 4 9 9 C 1.33656 * 107.68689 * 180.02562 * 8 7 5 10 10 N 1.30621 * 109.15337 * 359.97438 * 9 8 7 11 11 C 1.33689 * 108.99352 * 359.73416 * 10 9 8 12 12 C 1.50705 * 126.27125 * 180.27355 * 11 10 9 13 13 F 1.39899 * 109.46957 * 120.18952 * 12 11 10 14 14 F 1.39902 * 109.46342 * 240.18569 * 12 11 10 15 15 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 16 16 C 1.53945 * 113.74529 * 158.73809 * 15 2 1 17 17 N 1.47807 * 86.04084 * 222.08774 * 16 15 2 18 18 C 1.36936 * 134.45937 * 204.64279 * 17 16 15 19 19 H 1.08005 * 120.00346 * 179.86277 * 18 17 16 20 20 C 1.38811 * 119.99896 * 359.87268 * 18 17 16 21 21 N 1.31623 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47031 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47325 * 119.99616 * 22 20 18 25 25 H 1.48504 * 109.47317 * 239.99651 * 22 20 18 26 26 C 1.47576 * 91.04962 * 24.54882 * 17 16 15 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 31 31 H 1.08001 * 125.42155 * 180.02562 * 9 8 7 32 32 H 1.08995 * 109.46892 * 0.18485 * 12 11 10 33 33 H 1.09002 * 112.94852 * 290.34047 * 15 2 1 34 34 H 1.08997 * 113.76654 * 336.35575 * 16 15 2 35 35 H 1.09002 * 113.76615 * 107.75050 * 16 15 2 36 36 H 0.96992 * 119.99763 * 180.02562 * 21 20 18 37 37 H 1.09006 * 113.77253 * 221.14869 * 26 17 16 38 38 H 1.09000 * 113.87108 * 89.76663 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1625 2.4117 7 6 2.6356 -0.7100 3.5553 8 8 2.9941 -2.0119 3.6467 9 6 3.3787 -2.2398 4.9062 10 7 3.2728 -1.1339 5.5934 11 6 2.8223 -0.1644 4.7907 12 6 2.5640 1.2681 5.1811 13 9 3.3629 2.1143 4.4047 14 9 1.2156 1.5737 4.9670 15 6 2.0400 -0.7213 -1.2492 16 6 3.4848 -0.3521 -1.6317 17 7 2.9978 -0.3178 -3.0268 18 6 3.5875 -0.4758 -4.2526 19 1 2.9927 -0.4039 -5.1513 20 6 4.9495 -0.7285 -4.3402 21 7 5.6744 -0.8158 -3.2450 22 14 5.7538 -0.9448 -6.0122 23 1 4.7284 -0.8020 -7.0769 24 1 6.8040 0.0893 -6.1939 25 1 6.3682 -2.2942 -6.0952 26 6 1.6214 -0.0473 -2.5684 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.2491 -1.6318 1.1527 31 1 3.7232 -3.1871 5.2939 32 1 2.8051 1.4066 6.2349 33 1 1.8528 -1.7949 -1.2263 34 1 3.8047 0.6190 -1.2540 35 1 4.2071 -1.1448 -1.4367 36 1 6.6263 -0.9920 -3.3063 37 1 0.8586 -0.5970 -3.1200 38 1 1.3909 1.0131 -2.4661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970429468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:25 Heat of formation + Delta-G solvation = -78.331027 kcal Electronic energy + Delta-G solvation = -26501.009928 eV Core-core repulsion = 22210.235125 eV Total energy + Delta-G solvation = -4290.774803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.01134 -48.04060 -44.70289 -41.09103 -39.68305 -36.69059 -36.12024 -34.22159 -32.73285 -31.50335 -29.38389 -28.22303 -26.63466 -25.74731 -24.98964 -23.63036 -22.57993 -21.77234 -20.96514 -19.53493 -18.78008 -18.55219 -18.43758 -18.28442 -17.77572 -17.50042 -16.93562 -16.66204 -16.01733 -15.80426 -15.71170 -15.21876 -14.93623 -14.91693 -14.68808 -14.38742 -14.13848 -13.89058 -13.47518 -13.28807 -13.10880 -12.93717 -12.81466 -12.74125 -12.56579 -12.52096 -12.17292 -11.99191 -11.77732 -11.62218 -11.41141 -11.20687 -10.88975 -10.54863 -10.15844 -8.93223 -7.91789 -5.25342 -0.55237 1.13210 1.13881 1.44880 1.46106 1.56298 1.77192 1.96340 2.28219 2.46519 3.09827 3.14499 3.28818 3.33940 3.45838 3.71745 3.87027 3.90375 3.94846 4.05775 4.24400 4.26212 4.42555 4.56847 4.72838 4.77912 4.84429 4.91676 4.98747 5.03847 5.23917 5.31835 5.33080 5.52868 5.62896 5.92415 6.09133 6.33395 6.86599 6.90813 7.60042 8.55344 9.25452 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.003185 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.788834 B = 8788.128230 C = 9229.651887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.067 0.933 4 N -0.693 5.693 5 C 0.594 3.406 6 O -0.530 6.530 7 C -0.071 4.071 8 O -0.179 6.179 9 C 0.239 3.761 10 N -0.494 5.494 11 C -0.022 4.022 12 C 0.351 3.649 13 F -0.200 7.200 14 F -0.196 7.196 15 C -0.109 4.109 16 C 0.166 3.834 17 N -0.644 5.644 18 C -0.234 4.234 19 H 0.086 0.914 20 C -0.068 4.068 21 N -0.956 5.956 22 Si 0.978 3.022 23 H -0.263 1.263 24 H -0.296 1.296 25 H -0.290 1.290 26 C 0.132 3.868 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.415 0.585 31 H 0.321 0.679 32 H 0.171 0.829 33 H 0.107 0.893 34 H 0.003 0.997 35 H 0.042 0.958 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 -5.020 19.612 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.054 3.946 3 H 0.086 0.914 4 N -0.343 5.343 5 C 0.378 3.622 6 O -0.408 6.408 7 C -0.129 4.129 8 O -0.065 6.065 9 C 0.014 3.986 10 N -0.221 5.221 11 C -0.147 4.147 12 C 0.297 3.703 13 F -0.181 7.181 14 F -0.177 7.177 15 C -0.129 4.129 16 C 0.040 3.960 17 N -0.371 5.371 18 C -0.363 4.363 19 H 0.104 0.896 20 C -0.261 4.261 21 N -0.605 5.605 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.217 1.217 26 C 0.006 3.994 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.252 0.748 31 H 0.335 0.665 32 H 0.187 0.813 33 H 0.125 0.875 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.816 -4.190 19.945 22.206 hybrid contribution 0.983 -0.296 -1.652 1.945 sum -7.833 -4.486 18.293 20.399 Atomic orbital electron populations 1.22062 0.92677 1.03374 1.02690 1.21012 0.95505 0.96030 0.82030 0.91436 1.45890 1.65178 1.14718 1.08539 1.16563 0.78323 0.85690 0.81648 1.90944 1.51049 1.14804 1.84004 1.22924 1.08927 0.83324 0.97741 1.84585 1.61992 1.25251 1.34684 1.29808 0.92429 1.00851 0.75462 1.70204 1.18899 0.99371 1.33646 1.22545 1.03478 0.98275 0.90353 1.19744 0.72917 0.80729 0.96876 1.93040 1.73704 1.72216 1.79152 1.93027 1.34673 1.93441 1.96559 1.23462 0.96262 1.00685 0.92505 1.22195 0.94018 0.96490 0.83293 1.46427 1.05923 1.82835 1.01906 1.19511 0.91976 1.40331 0.84442 0.89629 1.25633 0.96766 1.02942 1.00768 1.70020 1.05817 1.56857 1.27805 0.85011 0.78220 0.76789 0.79317 1.18767 1.22281 1.21657 1.22684 0.87654 0.97666 0.91352 0.90160 0.92977 0.90564 0.74835 0.66462 0.81260 0.87477 0.97895 0.93997 0.94352 0.91438 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.31 71.98 0.67 -2.87 16 2 C 0.16 4.67 2.38 44.99 0.11 4.77 16 3 H 0.07 2.38 7.41 -2.39 -0.02 2.36 16 4 N -0.69 -18.69 5.07 -446.47 -2.27 -20.96 16 5 C 0.59 17.87 7.75 86.46 0.67 18.54 16 6 O -0.53 -19.26 13.59 -4.27 -0.06 -19.32 16 7 C -0.07 -1.80 7.18 24.05 0.17 -1.63 16 8 O -0.18 -3.24 10.57 -7.04 -0.07 -3.31 16 9 C 0.24 2.74 13.21 130.42 1.72 4.46 16 10 N -0.49 -9.08 11.26 -303.13 -3.41 -12.50 16 11 C -0.02 -0.53 6.59 41.83 0.28 -0.25 16 12 C 0.35 8.30 5.10 71.24 0.36 8.66 16 13 F -0.20 -5.97 16.21 44.97 0.73 -5.24 16 14 F -0.20 -5.41 16.18 44.97 0.73 -4.68 16 15 C -0.11 -3.72 3.47 -10.13 -0.04 -3.75 16 16 C 0.17 7.85 7.08 86.44 0.61 8.46 16 17 N -0.64 -32.93 3.70 -716.08 -2.65 -35.58 16 18 C -0.23 -13.18 10.70 84.03 0.90 -12.28 16 19 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 21 N -0.96 -58.31 11.39 21.65 0.25 -58.07 16 22 Si 0.98 45.90 29.55 68.60 2.03 47.92 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.13 4.99 7.64 86.49 0.66 5.65 16 27 H 0.08 1.77 7.52 -2.39 -0.02 1.75 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.41 9.38 8.40 -92.71 -0.78 8.60 16 31 H 0.32 -0.78 8.06 -2.91 -0.02 -0.81 16 32 H 0.17 2.49 8.14 -2.39 -0.02 2.48 16 33 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.00 0.17 7.99 -2.39 -0.02 0.15 16 35 H 0.04 2.22 7.17 -2.39 -0.02 2.20 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -79.31 336.25 2.19 -77.12 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.34 Total: 8.30 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 6.59 Total: 26.31 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -8.08 Total: -127.10 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.13 Total: -22.63 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 1.46 Total: -9.93 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -79.31 2.19 -77.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970429468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.214 kcal (2) G-P(sol) polarization free energy of solvation -79.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds