Wall clock time and date at job start Tue Mar 31 2020 11:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47106 * 2 1 4 4 N 1.46498 * 109.47442 * 239.99918 * 2 1 3 5 5 C 1.34779 * 119.99683 * 85.00303 * 4 2 1 6 6 O 1.21683 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.46725 * 119.99733 * 180.02562 * 5 4 2 8 8 O 1.35348 * 126.64489 * 0.02562 * 7 5 4 9 9 C 1.33665 * 107.68147 * 180.02562 * 8 7 5 10 10 N 1.30614 * 109.15867 * 0.02562 * 9 8 7 11 11 C 1.33698 * 108.99421 * 359.72920 * 10 9 8 12 12 C 1.50700 * 126.27614 * 180.26860 * 11 10 9 13 13 F 1.39901 * 109.47190 * 120.18868 * 12 11 10 14 14 F 1.39893 * 109.47384 * 240.19436 * 12 11 10 15 15 C 1.53004 * 109.47254 * 119.99727 * 2 1 3 16 16 C 1.53497 * 114.20756 * 300.00701 * 15 2 1 17 17 N 1.47070 * 87.98301 * 220.34168 * 16 15 2 18 18 C 1.36932 * 136.05620 * 207.08686 * 17 16 15 19 19 H 1.08006 * 120.00205 * 7.81892 * 18 17 16 20 20 C 1.38809 * 120.00281 * 187.82655 * 18 17 16 21 21 N 1.31616 * 120.00068 * 195.17204 * 20 18 17 22 22 Si 1.86802 * 119.99918 * 15.16359 * 20 18 17 23 23 H 1.48504 * 109.47042 * 270.00682 * 22 20 18 24 24 H 1.48499 * 109.47021 * 30.00157 * 22 20 18 25 25 H 1.48492 * 109.47106 * 150.00508 * 22 20 18 26 26 C 1.47068 * 87.88415 * 27.33811 * 17 16 15 27 27 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47359 * 300.00317 * 1 2 3 29 29 H 1.08999 * 109.46774 * 60.00056 * 1 2 3 30 30 H 0.96997 * 120.00314 * 265.00182 * 4 2 1 31 31 H 1.08001 * 125.41721 * 180.02562 * 9 8 7 32 32 H 1.09010 * 109.46583 * 0.19471 * 12 11 10 33 33 H 1.09005 * 113.40728 * 73.19861 * 15 2 1 34 34 H 1.08996 * 113.46841 * 105.55693 * 16 15 2 35 35 H 1.08998 * 113.51535 * 335.12668 * 16 15 2 36 36 H 0.96995 * 120.00585 * 354.89801 * 21 20 18 37 37 H 1.09005 * 113.46482 * 87.44223 * 26 17 16 38 38 H 1.09000 * 113.46807 * 217.87726 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8573 1.1624 -2.4118 7 6 2.6358 -0.7100 -3.5552 8 8 2.9933 -2.0122 -3.6468 9 6 3.3794 -2.2395 -4.9061 10 7 3.2753 -1.1333 -5.5927 11 6 2.8134 -0.1666 -4.7930 12 6 2.5421 1.2626 -5.1866 13 9 1.1922 1.5581 -4.9684 14 9 3.3372 2.1175 -4.4160 15 6 2.0400 -0.7212 1.2493 16 6 1.5897 -0.0846 2.5715 17 7 2.9389 -0.3445 3.0960 18 6 3.4924 -0.5603 4.3297 19 1 2.8556 -0.6862 5.1929 20 6 4.8721 -0.6173 4.4711 21 7 5.4012 -1.1127 5.5697 22 14 5.9780 0.0091 3.1020 23 1 6.2775 -1.1001 2.1611 24 1 5.2905 1.1048 2.3727 25 1 7.2449 0.5203 3.6839 26 6 3.4328 -0.2642 1.7130 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.2491 -1.6317 -1.1526 31 1 3.7228 -3.1872 -5.2940 32 1 2.7780 1.3997 -6.2420 33 1 1.9118 -1.8029 1.2076 34 1 0.8094 -0.6493 3.0815 35 1 1.3544 0.9762 2.4855 36 1 4.8298 -1.3695 6.3102 37 1 3.6837 0.7493 1.3999 38 1 4.2228 -0.9820 1.4919 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970429469.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:27 Heat of formation + Delta-G solvation = -74.011669 kcal Electronic energy + Delta-G solvation = -26613.009510 eV Core-core repulsion = 22322.422008 eV Total energy + Delta-G solvation = -4290.587502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.01173 -48.03989 -44.70388 -41.23505 -40.03322 -36.75094 -36.19079 -34.56130 -32.83362 -31.63455 -29.53958 -28.23449 -26.98537 -25.64475 -24.85671 -23.53602 -22.49671 -21.79738 -21.18000 -19.66080 -19.52853 -18.55537 -18.50776 -18.28494 -17.78110 -17.57558 -17.01538 -16.68463 -16.08257 -15.99908 -15.72482 -15.32342 -15.21891 -15.02242 -14.90802 -14.41330 -14.37729 -13.88963 -13.67205 -13.34137 -13.24117 -13.14355 -12.81664 -12.65413 -12.53237 -12.51929 -12.16118 -11.91207 -11.77330 -11.51856 -11.45527 -11.03999 -10.86431 -10.55700 -10.19352 -9.26072 -8.63507 -5.48044 -0.55942 1.12207 1.13715 1.35253 1.47407 1.61815 1.75872 1.92876 2.27518 2.49171 2.98667 3.10299 3.14000 3.14544 3.34663 3.53135 3.79011 3.90498 3.92510 4.05360 4.16752 4.24209 4.32754 4.42546 4.58702 4.65001 4.67972 4.75175 4.84071 4.91183 4.97385 5.17869 5.26145 5.32105 5.46361 5.94591 6.08397 6.32139 6.68852 6.84821 7.31990 8.26938 8.88100 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.003579 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.775409 B = 7821.473051 C = 8221.639296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 H 0.078 0.922 4 N -0.695 5.695 5 C 0.595 3.405 6 O -0.527 6.527 7 C -0.072 4.072 8 O -0.178 6.178 9 C 0.240 3.760 10 N -0.496 5.496 11 C -0.021 4.021 12 C 0.351 3.649 13 F -0.196 7.196 14 F -0.199 7.199 15 C -0.103 4.103 16 C 0.128 3.872 17 N -0.658 5.658 18 C -0.292 4.292 19 H 0.053 0.947 20 C -0.081 4.081 21 N -0.969 5.969 22 Si 1.098 2.902 23 H -0.275 1.275 24 H -0.262 1.262 25 H -0.302 1.302 26 C 0.097 3.903 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.417 0.583 31 H 0.320 0.680 32 H 0.169 0.831 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.248 0.752 37 H 0.046 0.954 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.435 -3.322 -27.726 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.056 3.944 3 H 0.096 0.904 4 N -0.346 5.346 5 C 0.379 3.621 6 O -0.405 6.405 7 C -0.129 4.129 8 O -0.064 6.064 9 C 0.015 3.985 10 N -0.223 5.223 11 C -0.146 4.146 12 C 0.297 3.703 13 F -0.177 7.177 14 F -0.180 7.180 15 C -0.123 4.123 16 C 0.003 3.997 17 N -0.386 5.386 18 C -0.420 4.420 19 H 0.071 0.929 20 C -0.273 4.273 21 N -0.614 5.614 22 Si 0.924 3.076 23 H -0.201 1.201 24 H -0.187 1.187 25 H -0.230 1.230 26 C -0.028 4.028 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.254 0.746 31 H 0.334 0.666 32 H 0.185 0.815 33 H 0.136 0.864 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.871 -2.321 -28.525 29.432 hybrid contribution -1.428 -0.523 2.102 2.594 sum -8.299 -2.844 -26.423 27.841 Atomic orbital electron populations 1.22069 0.92828 1.03412 1.02743 1.20946 0.95527 0.96324 0.81634 0.90426 1.45880 1.65393 1.14816 1.08469 1.16529 0.78277 0.85668 0.81581 1.90961 1.50785 1.14832 1.83926 1.22910 1.08986 0.83375 0.97663 1.84586 1.62049 1.25140 1.34639 1.29791 0.92329 1.00758 0.75575 1.70212 1.18758 0.99508 1.33792 1.22535 1.03392 0.98285 0.90368 1.19725 0.72884 0.80747 0.96951 1.93029 1.34549 1.93652 1.96509 1.93038 1.73875 1.71690 1.79389 1.23241 0.95250 1.01270 0.92505 1.22505 0.88234 0.98221 0.90766 1.46295 1.06910 1.83736 1.01642 1.20027 0.91971 1.44926 0.85047 0.92933 1.26933 0.96284 0.99752 1.04342 1.70995 1.37730 1.45727 1.06987 0.83329 0.74073 0.77367 0.72836 1.20108 1.18723 1.23020 1.22956 0.97095 0.98495 0.84265 0.90637 0.90356 0.92780 0.74604 0.66555 0.81462 0.86386 0.92372 0.93106 0.94272 0.93678 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.29 71.98 0.67 -2.48 16 2 C 0.16 3.95 2.47 44.99 0.11 4.06 16 3 H 0.08 2.26 7.32 -2.39 -0.02 2.25 16 4 N -0.69 -15.34 5.07 -446.46 -2.27 -17.60 16 5 C 0.60 15.36 7.75 86.46 0.67 16.03 16 6 O -0.53 -16.99 13.59 -4.29 -0.06 -17.05 16 7 C -0.07 -1.54 7.18 24.05 0.17 -1.37 16 8 O -0.18 -2.59 10.57 -7.14 -0.08 -2.66 16 9 C 0.24 2.08 13.21 130.42 1.72 3.81 16 10 N -0.50 -7.85 11.26 -303.12 -3.41 -11.26 16 11 C -0.02 -0.45 6.60 41.83 0.28 -0.17 16 12 C 0.35 7.37 5.10 71.24 0.36 7.73 16 13 F -0.20 -4.95 16.20 44.97 0.73 -4.22 16 14 F -0.20 -5.32 16.19 44.97 0.73 -4.59 16 15 C -0.10 -2.98 3.67 -10.37 -0.04 -3.02 16 16 C 0.13 4.54 7.33 83.18 0.61 5.15 16 17 N -0.66 -31.29 3.62 -737.93 -2.67 -33.96 16 18 C -0.29 -17.02 11.03 84.03 0.93 -16.09 16 19 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 20 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 21 N -0.97 -62.97 13.70 21.65 0.30 -62.68 16 22 Si 1.10 54.23 25.50 68.60 1.75 55.98 16 23 H -0.27 -12.55 6.97 99.48 0.69 -11.86 16 24 H -0.26 -11.94 5.66 99.48 0.56 -11.38 16 25 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 26 C 0.10 3.80 5.18 83.26 0.43 4.23 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.55 7.48 -2.39 -0.02 1.53 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.42 7.20 8.40 -92.71 -0.78 6.42 16 31 H 0.32 -1.55 8.06 -2.91 -0.02 -1.57 16 32 H 0.17 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 36 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 37 H 0.05 1.81 6.81 -2.38 -0.02 1.79 16 38 H 0.05 1.85 6.22 -2.39 -0.01 1.84 16 Total: -1.00 -81.78 329.66 1.54 -80.23 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 0.14 Total: 4.32 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.38 Total: 13.49 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -8.05 Total: -125.50 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.13 Total: -19.71 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 1.46 Total: -8.81 kcal Atomic # 14 Polarization: 54.23 SS G_CDS: 1.75 Total: 55.98 kcal Total: -81.78 1.54 -80.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970429469.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.222 kcal (2) G-P(sol) polarization free energy of solvation -81.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds