Wall clock time and date at job start Tue Mar 31 2020 10:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.87122 * 2 1 4 4 C 1.54327 * 109.88048 * 238.98772 * 2 1 3 5 5 H 1.09001 * 110.72260 * 336.92819 * 4 2 1 6 6 N 1.46504 * 110.72078 * 100.02906 * 4 2 1 7 7 C 1.36934 * 119.99567 * 205.00007 * 6 4 2 8 8 H 1.08001 * 120.00537 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99798 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00134 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00229 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47228 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46793 * 299.99987 * 11 9 7 14 14 H 1.48500 * 109.47000 * 60.00079 * 11 9 7 15 15 C 1.55161 * 102.93969 * 218.38847 * 4 2 1 16 16 C 1.54912 * 101.58011 * 35.50277 * 15 4 2 17 17 N 1.47018 * 109.88435 * 121.17813 * 2 1 3 18 18 C 1.34780 * 125.64903 * 298.32360 * 17 2 1 19 19 O 1.21692 * 119.99708 * 359.97438 * 18 17 2 20 20 C 1.46717 * 120.00254 * 179.97438 * 18 17 2 21 21 O 1.35347 * 126.64308 * 359.69177 * 20 18 17 22 22 C 1.33662 * 107.68501 * 179.87272 * 21 20 18 23 23 N 1.30618 * 109.15464 * 0.39032 * 22 21 20 24 24 C 1.33694 * 108.99333 * 359.75797 * 23 22 21 25 25 C 1.50703 * 126.27356 * 179.97438 * 24 23 22 26 26 F 1.39903 * 109.46842 * 30.02310 * 25 24 23 27 27 F 1.39897 * 109.47013 * 150.02234 * 25 24 23 28 28 H 1.08992 * 109.46671 * 181.01149 * 1 2 3 29 29 H 1.08995 * 109.46783 * 301.01478 * 1 2 3 30 30 H 1.08998 * 109.46692 * 61.01052 * 1 2 3 31 31 H 0.97000 * 119.99825 * 24.99187 * 6 4 2 32 32 H 0.97005 * 119.99717 * 0.02562 * 10 9 7 33 33 H 1.09001 * 110.99941 * 153.57362 * 15 4 2 34 34 H 1.08997 * 111.00673 * 277.42786 * 15 4 2 35 35 H 1.09001 * 110.36187 * 204.14704 * 16 15 4 36 36 H 1.09003 * 110.36708 * 81.82667 * 16 15 4 37 37 H 1.08003 * 125.42038 * 180.15264 * 22 21 20 38 38 H 1.08996 * 109.47308 * 270.02663 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3040 -1.4414 -1.6222 6 7 2.4556 0.1994 -2.2873 7 6 2.4582 -0.1894 -3.6003 8 1 2.1654 -1.1942 -3.8666 9 6 2.8374 0.7082 -4.5890 10 7 3.1938 1.9330 -4.2645 11 14 2.8418 0.1778 -6.3802 12 1 3.2820 1.3122 -7.2313 13 1 3.7743 -0.9645 -6.5558 14 1 1.4719 -0.2359 -6.7773 15 6 3.2877 -1.5132 -0.6946 16 6 2.8145 -1.8805 0.7341 17 7 2.0301 -0.7157 1.1828 18 6 1.8086 -0.3648 2.4652 19 8 1.1437 0.6221 2.7197 20 6 2.3692 -1.1726 3.5542 21 8 3.1186 -2.2924 3.4261 22 6 3.4276 -2.7169 4.6553 23 7 2.8937 -1.9112 5.5338 24 6 2.2313 -0.9439 4.8911 25 6 1.4710 0.1909 5.5278 26 9 2.0613 0.5181 6.7532 27 9 1.5024 1.3053 4.6827 28 1 -0.3632 -1.0275 0.0181 29 1 -0.3633 0.5295 0.8807 30 1 -0.3632 0.4981 -0.8989 31 1 2.7188 1.1018 -2.0480 32 1 3.1919 2.2083 -3.3344 33 1 3.4852 -2.4092 -1.2831 34 1 4.1655 -0.8679 -0.6617 35 1 3.6717 -2.0359 1.3892 36 1 2.1886 -2.7725 0.7088 37 1 4.0209 -3.5895 4.8854 38 1 0.4368 -0.1116 5.6920 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986986556.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:19 Heat of formation + Delta-G solvation = -80.293163 kcal Electronic energy + Delta-G solvation = -26901.684551 eV Core-core repulsion = 22610.824663 eV Total energy + Delta-G solvation = -4290.859888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.04427 -47.03428 -43.94184 -40.10767 -37.73111 -35.66727 -34.49807 -32.20641 -31.31681 -30.99256 -29.11507 -27.12551 -25.17594 -24.45583 -23.25508 -22.78335 -21.92268 -20.63394 -19.76453 -18.21236 -17.94340 -17.59663 -17.17118 -17.14370 -17.00376 -16.16349 -15.91830 -15.33906 -15.01062 -14.48774 -14.33616 -13.81268 -13.74353 -13.58559 -13.37204 -13.20425 -13.04329 -12.82561 -12.38445 -12.19878 -12.04848 -11.77686 -11.56557 -11.38553 -11.24346 -11.03634 -10.70815 -10.64878 -10.36774 -10.17465 -10.03760 -9.60697 -9.28842 -9.02922 -8.68724 -7.18924 -6.20492 -3.23272 0.31207 1.85515 1.94532 2.80789 2.81996 3.06477 3.46339 3.49204 3.67180 3.71169 3.95763 4.13099 4.56120 4.60579 4.69828 4.81505 4.91812 5.02506 5.10896 5.17069 5.30117 5.41175 5.52672 5.55947 5.61432 5.73743 5.87121 5.88254 6.10953 6.24195 6.38569 6.42208 6.46504 6.71430 6.94018 7.34395 7.68848 7.85526 8.64108 9.07465 9.94180 10.07217 11.27049 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.003182 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.155358 B = 8798.203772 C = 9382.580491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.081 0.919 4 C 0.183 3.817 5 H 0.072 0.928 6 N -0.724 5.724 7 C -0.339 4.339 8 H 0.067 0.933 9 C -0.040 4.040 10 N -0.938 5.938 11 Si 1.080 2.920 12 H -0.284 1.284 13 H -0.294 1.294 14 H -0.294 1.294 15 C -0.155 4.155 16 C 0.095 3.905 17 N -0.593 5.593 18 C 0.603 3.397 19 O -0.492 6.492 20 C -0.043 4.043 21 O -0.177 6.177 22 C 0.200 3.800 23 N -0.468 5.468 24 C -0.020 4.020 25 C 0.356 3.644 26 F -0.191 7.191 27 F -0.162 7.162 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.369 0.631 32 H 0.256 0.744 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.262 0.738 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -11.353 18.264 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.099 0.901 4 C 0.071 3.929 5 H 0.089 0.911 6 N -0.366 5.366 7 C -0.469 4.469 8 H 0.085 0.915 9 C -0.238 4.238 10 N -0.583 5.583 11 Si 0.911 3.089 12 H -0.210 1.210 13 H -0.222 1.222 14 H -0.221 1.221 15 C -0.196 4.196 16 C -0.027 4.027 17 N -0.326 5.326 18 C 0.388 3.612 19 O -0.368 6.368 20 C -0.100 4.100 21 O -0.062 6.062 22 C -0.026 4.026 23 N -0.195 5.195 24 C -0.145 4.145 25 C 0.301 3.699 26 F -0.172 7.172 27 F -0.142 7.142 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.203 0.797 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.278 0.722 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.008 -10.543 17.379 20.426 hybrid contribution 0.104 -0.519 1.161 1.276 sum -1.904 -11.062 18.540 21.673 Atomic orbital electron populations 1.22057 0.94294 1.01884 1.03075 1.22104 0.94892 0.96913 0.83843 0.90098 1.21189 0.93639 0.91424 0.86672 0.91056 1.42354 1.80266 1.11252 1.02687 1.20001 1.44142 0.99031 0.83748 0.91500 1.25815 0.99112 0.94388 1.04485 1.70894 1.50125 1.17777 1.19471 0.83241 0.75894 0.74956 0.74834 1.20986 1.22179 1.22149 1.23584 1.01336 1.01995 0.92696 1.22561 0.94904 0.87911 0.97365 1.48448 1.51084 1.28656 1.04416 1.16006 0.81458 0.83584 0.80107 1.91006 1.39244 1.24775 1.81815 1.23186 1.00787 0.89760 0.96266 1.84704 1.52665 1.34593 1.34240 1.28461 0.98480 0.99885 0.75762 1.70217 1.11358 1.03801 1.34145 1.22490 1.02664 0.99172 0.90136 1.19331 0.96159 0.80219 0.74179 1.93028 1.86652 1.93285 1.44263 1.93218 1.97451 1.53347 1.70225 0.92874 0.91736 0.90780 0.79676 0.93260 0.90146 0.90695 0.90635 0.91196 0.72204 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.10 37.16 0.34 -2.08 16 2 C 0.13 2.11 3.21 -66.95 -0.21 1.89 16 3 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 4 C 0.18 3.35 3.14 -66.09 -0.21 3.14 16 5 H 0.07 1.32 7.80 -51.93 -0.40 0.91 16 6 N -0.72 -16.96 5.22 -51.65 -0.27 -17.23 16 7 C -0.34 -8.95 9.96 -15.06 -0.15 -9.10 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 C -0.04 -1.10 5.50 -17.43 -0.10 -1.20 16 10 N -0.94 -28.13 13.70 55.49 0.76 -27.37 16 11 Si 1.08 24.88 29.92 -169.99 -5.09 19.80 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 15 C -0.15 -2.42 6.77 -24.58 -0.17 -2.59 16 16 C 0.10 1.22 6.18 -2.53 -0.02 1.21 16 17 N -0.59 -8.85 3.06 -164.52 -0.50 -9.35 16 18 C 0.60 9.17 7.56 -12.83 -0.10 9.08 16 19 O -0.49 -8.52 12.18 5.20 0.06 -8.46 16 20 C -0.04 -0.55 6.92 -36.84 -0.26 -0.80 16 21 O -0.18 -1.79 8.07 4.42 0.04 -1.75 16 22 C 0.20 1.52 13.21 52.25 0.69 2.21 16 23 N -0.47 -5.17 11.21 -10.88 -0.12 -5.29 16 24 C -0.02 -0.25 6.78 -82.46 -0.56 -0.81 16 25 C 0.36 4.26 5.63 36.01 0.20 4.46 16 26 F -0.19 -2.45 17.29 2.25 0.04 -2.41 16 27 F -0.16 -2.43 13.49 2.25 0.03 -2.39 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.02 6.90 -51.93 -0.36 0.66 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.37 9.11 6.39 -40.82 -0.26 8.85 16 32 H 0.26 7.58 6.77 -40.82 -0.28 7.30 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 0.87 6.26 -51.93 -0.32 0.55 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.26 0.46 8.06 -52.48 -0.42 0.04 16 38 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -33.17 326.00 -4.86 -38.03 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.19 Total: 6.10 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.53 Total: 5.41 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.14 Total: -59.24 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.10 Total: -10.20 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.09 Total: 19.80 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.17 -4.86 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986986556.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.261 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds