Wall clock time and date at job start Tue Mar 31 2020 10:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.87122 * 2 1 4 4 C 1.54327 * 109.88048 * 238.98772 * 2 1 3 5 5 H 1.09001 * 110.72260 * 336.92819 * 4 2 1 6 6 N 1.46504 * 110.72078 * 100.02906 * 4 2 1 7 7 C 1.36934 * 119.99567 * 205.00007 * 6 4 2 8 8 H 1.08001 * 120.00537 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99798 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00134 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00229 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47228 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46793 * 299.99987 * 11 9 7 14 14 H 1.48500 * 109.47000 * 60.00079 * 11 9 7 15 15 C 1.55161 * 102.93969 * 218.38847 * 4 2 1 16 16 C 1.54912 * 101.58011 * 35.50277 * 15 4 2 17 17 N 1.47018 * 109.88435 * 121.17813 * 2 1 3 18 18 C 1.34780 * 125.64903 * 298.32360 * 17 2 1 19 19 O 1.21692 * 119.99708 * 359.97438 * 18 17 2 20 20 C 1.46717 * 120.00254 * 179.97438 * 18 17 2 21 21 O 1.35347 * 126.64308 * 359.69177 * 20 18 17 22 22 C 1.33662 * 107.68501 * 179.87272 * 21 20 18 23 23 N 1.30618 * 109.15464 * 0.39032 * 22 21 20 24 24 C 1.33694 * 108.99333 * 359.75797 * 23 22 21 25 25 C 1.50703 * 126.27356 * 179.97438 * 24 23 22 26 26 F 1.39903 * 109.46842 * 30.02310 * 25 24 23 27 27 F 1.39897 * 109.47013 * 150.02234 * 25 24 23 28 28 H 1.08992 * 109.46671 * 181.01149 * 1 2 3 29 29 H 1.08995 * 109.46783 * 301.01478 * 1 2 3 30 30 H 1.08998 * 109.46692 * 61.01052 * 1 2 3 31 31 H 0.97000 * 119.99825 * 24.99187 * 6 4 2 32 32 H 0.97005 * 119.99717 * 0.02562 * 10 9 7 33 33 H 1.09001 * 110.99941 * 153.57362 * 15 4 2 34 34 H 1.08997 * 111.00673 * 277.42786 * 15 4 2 35 35 H 1.09001 * 110.36187 * 204.14704 * 16 15 4 36 36 H 1.09003 * 110.36708 * 81.82667 * 16 15 4 37 37 H 1.08003 * 125.42038 * 180.15264 * 22 21 20 38 38 H 1.08996 * 109.47308 * 270.02663 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3040 -1.4414 -1.6222 6 7 2.4556 0.1994 -2.2873 7 6 2.4582 -0.1894 -3.6003 8 1 2.1654 -1.1942 -3.8666 9 6 2.8374 0.7082 -4.5890 10 7 3.1938 1.9330 -4.2645 11 14 2.8418 0.1778 -6.3802 12 1 3.2820 1.3122 -7.2313 13 1 3.7743 -0.9645 -6.5558 14 1 1.4719 -0.2359 -6.7773 15 6 3.2877 -1.5132 -0.6946 16 6 2.8145 -1.8805 0.7341 17 7 2.0301 -0.7157 1.1828 18 6 1.8086 -0.3648 2.4652 19 8 1.1437 0.6221 2.7197 20 6 2.3692 -1.1726 3.5542 21 8 3.1186 -2.2924 3.4261 22 6 3.4276 -2.7169 4.6553 23 7 2.8937 -1.9112 5.5338 24 6 2.2313 -0.9439 4.8911 25 6 1.4710 0.1909 5.5278 26 9 2.0613 0.5181 6.7532 27 9 1.5024 1.3053 4.6827 28 1 -0.3632 -1.0275 0.0181 29 1 -0.3633 0.5295 0.8807 30 1 -0.3632 0.4981 -0.8989 31 1 2.7188 1.1018 -2.0480 32 1 3.1919 2.2083 -3.3344 33 1 3.4852 -2.4092 -1.2831 34 1 4.1655 -0.8679 -0.6617 35 1 3.6717 -2.0359 1.3892 36 1 2.1886 -2.7725 0.7088 37 1 4.0209 -3.5895 4.8854 38 1 0.4368 -0.1116 5.6920 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986986556.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:19 Heat of formation + Delta-G solvation = -105.257673 kcal Electronic energy + Delta-G solvation = -26902.767093 eV Core-core repulsion = 22610.824663 eV Total energy + Delta-G solvation = -4291.942430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.03532 -48.04870 -44.73544 -41.33159 -39.03379 -36.60031 -36.14942 -33.63493 -32.61777 -32.10747 -30.68348 -28.09080 -26.73091 -25.41079 -24.97838 -23.78610 -22.95167 -21.90180 -20.95966 -19.51152 -19.09690 -18.84215 -18.25994 -18.13651 -17.93651 -17.38795 -16.84525 -16.70380 -16.35711 -15.81561 -15.47175 -15.39550 -14.97442 -14.81765 -14.64483 -14.35147 -14.23245 -13.97826 -13.74703 -13.57108 -13.13600 -12.90822 -12.76044 -12.72686 -12.47469 -12.39216 -12.20934 -12.05570 -11.87355 -11.75114 -11.42116 -11.21300 -10.90731 -10.49548 -9.87465 -9.15387 -8.37583 -5.34113 -0.57559 1.06107 1.12528 1.61383 1.71010 1.72124 1.74238 1.86865 2.28937 2.73172 2.91850 3.09852 3.19504 3.39938 3.54021 3.59953 3.74133 3.83583 3.97477 4.00630 4.05682 4.20847 4.23927 4.25923 4.37180 4.55103 4.59942 4.78359 4.92435 4.93993 5.10610 5.11728 5.15966 5.30688 5.61994 6.11120 6.25463 6.48553 6.70659 7.05527 7.94407 8.07567 9.13468 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.003182 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.155358 B = 8798.203772 C = 9382.580491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 H 0.051 0.949 4 C 0.177 3.823 5 H 0.076 0.924 6 N -0.740 5.740 7 C -0.327 4.327 8 H 0.076 0.924 9 C -0.103 4.103 10 N -0.977 5.977 11 Si 1.127 2.873 12 H -0.299 1.299 13 H -0.275 1.275 14 H -0.277 1.277 15 C -0.146 4.146 16 C 0.106 3.894 17 N -0.596 5.596 18 C 0.602 3.398 19 O -0.523 6.523 20 C -0.067 4.067 21 O -0.175 6.175 22 C 0.239 3.761 23 N -0.500 5.500 24 C -0.016 4.016 25 C 0.346 3.654 26 F -0.198 7.198 27 F -0.183 7.183 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.358 0.642 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.320 0.680 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -14.799 19.320 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.069 0.931 4 C 0.067 3.933 5 H 0.094 0.906 6 N -0.380 5.380 7 C -0.459 4.459 8 H 0.094 0.906 9 C -0.294 4.294 10 N -0.625 5.625 11 Si 0.952 3.048 12 H -0.225 1.225 13 H -0.201 1.201 14 H -0.203 1.203 15 C -0.187 4.187 16 C -0.016 4.016 17 N -0.329 5.329 18 C 0.389 3.611 19 O -0.401 6.401 20 C -0.124 4.124 21 O -0.061 6.061 22 C 0.014 3.986 23 N -0.227 5.227 24 C -0.140 4.140 25 C 0.292 3.708 26 F -0.179 7.179 27 F -0.164 7.164 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.190 0.810 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.334 0.666 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.753 -14.055 18.496 23.297 hybrid contribution 0.058 0.436 1.006 1.098 sum -1.696 -13.619 19.502 23.847 Atomic orbital electron populations 1.21948 0.93412 1.02766 1.02151 1.21776 0.95485 0.95455 0.84371 0.93061 1.21384 0.94962 0.90876 0.86091 0.90601 1.42531 1.80760 1.11684 1.03065 1.20366 1.41510 0.99003 0.84973 0.90610 1.27180 0.99661 0.94145 1.08463 1.71005 1.53411 1.19440 1.18624 0.82633 0.77040 0.74683 0.70424 1.22529 1.20061 1.20283 1.23389 0.98980 1.01522 0.94812 1.22624 0.95790 0.87781 0.95401 1.48429 1.51426 1.29070 1.03947 1.16239 0.80998 0.83446 0.80387 1.90987 1.40581 1.26141 1.82376 1.22507 1.03247 0.91368 0.95279 1.84686 1.52383 1.33668 1.35372 1.29825 0.95385 0.99205 0.74144 1.70281 1.12844 1.04559 1.35040 1.22553 1.02110 0.99216 0.90164 1.19791 0.97917 0.79566 0.73515 1.93006 1.86963 1.93348 1.44590 1.93171 1.97610 1.54629 1.70989 0.91013 0.92203 0.92088 0.81007 0.94694 0.88859 0.92721 0.88704 0.88460 0.66564 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.10 71.98 0.65 -3.87 16 2 C 0.13 4.51 3.21 45.35 0.15 4.66 16 3 H 0.05 2.04 7.71 -2.39 -0.02 2.02 16 4 C 0.18 6.40 3.14 46.18 0.15 6.55 16 5 H 0.08 2.69 7.80 -2.39 -0.02 2.68 16 6 N -0.74 -35.32 5.22 -317.31 -1.66 -36.98 16 7 C -0.33 -17.32 9.96 84.03 0.84 -16.49 16 8 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 9 C -0.10 -5.80 5.50 84.86 0.47 -5.33 16 10 N -0.98 -60.38 13.70 21.65 0.30 -60.09 16 11 Si 1.13 50.10 29.92 68.60 2.05 52.15 16 12 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 15 C -0.15 -4.36 6.77 31.99 0.22 -4.14 16 16 C 0.11 2.42 6.18 86.86 0.54 2.95 16 17 N -0.60 -17.18 3.06 -792.65 -2.43 -19.61 16 18 C 0.60 17.92 7.56 86.46 0.65 18.57 16 19 O -0.52 -18.37 12.18 -4.32 -0.05 -18.42 16 20 C -0.07 -1.58 6.92 24.04 0.17 -1.42 16 21 O -0.18 -2.87 8.07 -7.10 -0.06 -2.92 16 22 C 0.24 2.53 13.21 130.42 1.72 4.25 16 23 N -0.50 -9.50 11.21 -303.13 -3.40 -12.90 16 24 C -0.02 -0.37 6.78 41.83 0.28 -0.08 16 25 C 0.35 8.02 5.63 71.24 0.40 8.42 16 26 F -0.20 -4.93 17.29 44.97 0.78 -4.15 16 27 F -0.18 -5.58 13.49 44.97 0.61 -4.97 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.92 6.90 -2.39 -0.02 1.91 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.36 18.53 6.39 -92.71 -0.59 17.94 16 32 H 0.24 15.06 6.77 -92.70 -0.63 14.43 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 1.86 6.26 -2.39 -0.01 1.84 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.32 -1.01 8.06 -2.91 -0.02 -1.04 16 38 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -75.01 326.00 3.04 -71.98 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.67 Total: 21.84 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.23 Total: 14.07 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -7.19 Total: -129.57 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.11 Total: -21.34 kcal Atomic # 9 Polarization: -10.51 SS G_CDS: 1.38 Total: -9.12 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Total: -75.01 3.04 -71.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986986556.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.281 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds