Wall clock time and date at job start Tue Mar 31 2020 10:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.00500 * 2 1 4 4 C 1.54325 * 109.88206 * 121.09617 * 2 1 3 5 5 H 1.09009 * 110.86852 * 260.04472 * 4 2 1 6 6 N 1.46500 * 110.72129 * 23.24213 * 4 2 1 7 7 C 1.36935 * 120.00024 * 264.41287 * 6 4 2 8 8 H 1.07999 * 120.00094 * 0.02562 * 7 6 4 9 9 C 1.38818 * 119.99895 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99782 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99863 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47430 * 270.00419 * 11 9 7 13 13 H 1.48499 * 109.47359 * 30.00760 * 11 9 7 14 14 H 1.48509 * 109.46845 * 150.00505 * 11 9 7 15 15 C 1.55150 * 102.94525 * 141.61063 * 4 2 1 16 16 C 1.54912 * 101.58344 * 324.49603 * 15 4 2 17 17 N 1.47019 * 109.88421 * 238.89772 * 2 1 3 18 18 C 1.34779 * 125.64819 * 61.60375 * 17 2 1 19 19 O 1.21687 * 119.99592 * 0.02562 * 18 17 2 20 20 C 1.46715 * 120.00452 * 180.02562 * 18 17 2 21 21 O 1.35348 * 126.64479 * 0.02562 * 20 18 17 22 22 C 1.33661 * 107.68620 * 180.02562 * 21 20 18 23 23 N 1.30617 * 109.15544 * 0.02562 * 22 21 20 24 24 C 1.33693 * 108.99386 * 359.72978 * 23 22 21 25 25 C 1.50700 * 126.27045 * 180.26959 * 24 23 22 26 26 F 1.39900 * 109.46846 * 120.18888 * 25 24 23 27 27 F 1.39896 * 109.47073 * 240.18731 * 25 24 23 28 28 H 1.09002 * 109.47324 * 293.64361 * 1 2 3 29 29 H 1.09004 * 109.47034 * 53.64398 * 1 2 3 30 30 H 1.08997 * 109.47287 * 173.63575 * 1 2 3 31 31 H 0.97004 * 119.99792 * 84.40770 * 6 4 2 32 32 H 0.97003 * 119.99624 * 180.02562 * 10 9 7 33 33 H 1.08996 * 111.00719 * 82.57090 * 15 4 2 34 34 H 1.09005 * 111.00447 * 206.38714 * 15 4 2 35 35 H 1.08992 * 110.36836 * 155.85074 * 16 15 4 36 36 H 1.09007 * 110.36539 * 278.06703 * 16 15 4 37 37 H 1.08002 * 125.42242 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.47473 * 0.18953 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3524 -0.0481 2.0223 6 7 1.0471 -1.6855 1.7475 7 6 0.2102 -1.3081 2.7635 8 1 0.2927 -0.3204 3.1924 9 6 -0.7450 -2.1948 3.2415 10 7 -0.8459 -3.3983 2.7184 11 14 -1.8862 -1.6802 4.6279 12 1 -1.2690 -2.0294 5.9326 13 1 -2.1130 -0.2140 4.5641 14 1 -3.1843 -2.3883 4.4892 15 6 3.2875 -1.5143 0.6925 16 6 2.8145 -1.8795 -0.7367 17 7 2.0300 -0.7142 -1.1838 18 6 1.8074 -0.3623 -2.4657 19 8 1.1413 0.6241 -2.7188 20 6 2.3680 -1.1685 -3.5557 21 8 3.1231 -2.2846 -3.4292 22 6 3.4281 -2.7101 -4.6590 23 7 2.8937 -1.9035 -5.5364 24 6 2.2256 -0.9410 -4.8925 25 6 1.4587 0.1900 -5.5278 26 9 0.1176 0.1225 -5.1351 27 9 2.0037 1.4114 -5.1175 28 1 -0.3634 0.4121 0.9414 29 1 -0.3633 0.6092 -0.8277 30 1 -0.3634 -1.0213 -0.1139 31 1 0.9727 -2.5725 1.3619 32 1 -1.5136 -4.0178 3.0521 33 1 4.1653 -0.8689 0.6605 34 1 3.4855 -2.4107 1.2802 35 1 3.6716 -2.0340 -1.3921 36 1 2.1901 -2.7727 -0.7129 37 1 4.0219 -3.5820 -4.8904 38 1 1.5240 0.1091 -6.6127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986986558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:21 Heat of formation + Delta-G solvation = -80.071100 kcal Electronic energy + Delta-G solvation = -27382.756048 eV Core-core repulsion = 23091.905790 eV Total energy + Delta-G solvation = -4290.850258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.93215 -46.93903 -43.81598 -39.91081 -37.61052 -35.57627 -34.06342 -31.90680 -31.20554 -30.70417 -28.97895 -27.07420 -25.34538 -24.22668 -23.46391 -22.73854 -21.83583 -20.38397 -19.15046 -18.03069 -17.65501 -17.49473 -17.28822 -16.97563 -16.78382 -16.07350 -15.74579 -15.01622 -14.68858 -14.46523 -13.98724 -13.76559 -13.61015 -13.54318 -13.27135 -12.91774 -12.82880 -12.78024 -12.51750 -11.92276 -11.65883 -11.55857 -11.38889 -11.18033 -10.95076 -10.90534 -10.69937 -10.54191 -10.28590 -10.10048 -10.02766 -9.70663 -9.50805 -9.02098 -8.42494 -7.10662 -5.87021 -3.16845 0.46395 1.95076 2.08638 2.99763 3.07573 3.14582 3.38583 3.45029 3.45967 3.91807 4.10277 4.25903 4.50698 4.70748 4.88148 4.93413 5.04460 5.12524 5.22025 5.31477 5.48743 5.58505 5.63182 5.70598 5.81864 6.00342 6.12620 6.21015 6.33687 6.46038 6.58682 6.75964 6.91143 7.05443 7.28703 7.59437 7.61587 8.08438 8.30018 9.42467 9.95061 10.30248 11.34970 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.003825 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.318801 B = 7318.946452 C = 7795.601527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.109 3.891 3 H 0.066 0.934 4 C 0.171 3.829 5 H 0.079 0.921 6 N -0.708 5.708 7 C -0.243 4.243 8 H 0.073 0.927 9 C -0.007 4.007 10 N -0.930 5.930 11 Si 0.906 3.094 12 H -0.290 1.290 13 H -0.281 1.281 14 H -0.292 1.292 15 C -0.144 4.144 16 C 0.099 3.901 17 N -0.588 5.588 18 C 0.601 3.399 19 O -0.497 6.497 20 C -0.029 4.029 21 O -0.176 6.176 22 C 0.197 3.803 23 N -0.472 5.472 24 C -0.029 4.029 25 C 0.363 3.637 26 F -0.181 7.181 27 F -0.183 7.183 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.385 0.615 32 H 0.256 0.744 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.262 0.738 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 1.631 -14.769 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.004 3.996 3 H 0.084 0.916 4 C 0.058 3.942 5 H 0.097 0.903 6 N -0.347 5.347 7 C -0.374 4.374 8 H 0.091 0.909 9 C -0.204 4.204 10 N -0.577 5.577 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.206 1.206 14 H -0.218 1.218 15 C -0.183 4.183 16 C -0.023 4.023 17 N -0.320 5.320 18 C 0.386 3.614 19 O -0.373 6.373 20 C -0.087 4.087 21 O -0.061 6.061 22 C -0.029 4.029 23 N -0.200 5.200 24 C -0.154 4.154 25 C 0.309 3.691 26 F -0.162 7.162 27 F -0.164 7.164 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.219 0.781 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.277 0.723 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.973 2.171 -15.358 18.999 hybrid contribution -0.649 -0.347 1.226 1.430 sum 10.324 1.824 -14.131 17.596 Atomic orbital electron populations 1.21788 0.93232 1.02795 1.01400 1.22930 0.96565 0.95565 0.84574 0.91552 1.21266 0.88454 0.92305 0.92165 0.90335 1.42338 1.37511 1.13897 1.40944 1.19194 1.10197 0.98466 1.09496 0.90939 1.24726 0.99652 0.96091 0.99890 1.69652 1.37399 1.06250 1.44417 0.86219 0.80364 0.77740 0.82028 1.21684 1.20627 1.21795 1.23163 0.98662 1.02005 0.94502 1.22458 0.94794 0.88766 0.96326 1.48536 1.50633 1.28317 1.04504 1.16020 0.81329 0.83775 0.80272 1.90953 1.38909 1.25349 1.82122 1.23466 0.99141 0.89240 0.96838 1.84707 1.52535 1.34706 1.34153 1.28369 0.98774 0.99859 0.75864 1.70126 1.11516 1.03935 1.34374 1.22359 1.03260 0.99599 0.90162 1.19144 0.74918 0.77518 0.97553 1.93081 1.33815 1.96138 1.93185 1.93060 1.85607 1.44995 1.92773 0.90835 0.93996 0.91653 0.78076 0.93400 0.90894 0.89205 0.90940 0.90760 0.72251 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.02 37.15 0.30 -2.45 16 2 C 0.11 1.95 3.44 -66.96 -0.23 1.72 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.17 3.05 3.52 -66.10 -0.23 2.82 16 5 H 0.08 1.38 8.06 -51.92 -0.42 0.96 16 6 N -0.71 -15.89 3.91 -51.65 -0.20 -16.09 16 7 C -0.24 -6.17 8.40 -15.06 -0.13 -6.29 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 10 N -0.93 -26.64 13.06 55.49 0.72 -25.92 16 11 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C -0.14 -2.04 6.69 -24.58 -0.16 -2.21 16 16 C 0.10 1.41 6.12 -2.53 -0.02 1.40 16 17 N -0.59 -9.82 3.06 -164.53 -0.50 -10.32 16 18 C 0.60 10.51 7.61 -12.84 -0.10 10.41 16 19 O -0.50 -9.90 13.07 5.20 0.07 -9.83 16 20 C -0.03 -0.43 6.96 -36.84 -0.26 -0.69 16 21 O -0.18 -2.04 8.07 4.42 0.04 -2.01 16 22 C 0.20 1.69 13.21 52.25 0.69 2.38 16 23 N -0.47 -5.41 11.26 -10.88 -0.12 -5.54 16 24 C -0.03 -0.40 6.59 -82.46 -0.54 -0.95 16 25 C 0.36 4.79 5.10 36.01 0.18 4.97 16 26 F -0.18 -2.86 16.21 2.25 0.04 -2.82 16 27 F -0.18 -2.75 16.19 2.25 0.04 -2.72 16 28 H 0.07 1.57 7.12 -51.93 -0.37 1.20 16 29 H 0.04 0.86 7.07 -51.93 -0.37 0.49 16 30 H 0.06 1.50 7.63 -51.93 -0.40 1.10 16 31 H 0.39 9.34 7.84 -40.82 -0.32 9.02 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 0.87 6.25 -51.93 -0.32 0.55 16 36 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 37 H 0.26 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -32.07 325.74 -4.91 -36.98 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.28 Total: 6.00 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -0.59 Total: 10.83 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.10 Total: -57.87 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.10 Total: -11.84 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.07 Total: -5.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.07 -4.91 -36.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986986558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.087 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds