Wall clock time and date at job start Tue Mar 31 2020 10:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.00500 * 2 1 4 4 C 1.54325 * 109.88206 * 121.09617 * 2 1 3 5 5 H 1.09009 * 110.86852 * 260.04472 * 4 2 1 6 6 N 1.46500 * 110.72129 * 23.24213 * 4 2 1 7 7 C 1.36935 * 120.00024 * 264.41287 * 6 4 2 8 8 H 1.07999 * 120.00094 * 0.02562 * 7 6 4 9 9 C 1.38818 * 119.99895 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99782 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99863 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47430 * 270.00419 * 11 9 7 13 13 H 1.48499 * 109.47359 * 30.00760 * 11 9 7 14 14 H 1.48509 * 109.46845 * 150.00505 * 11 9 7 15 15 C 1.55150 * 102.94525 * 141.61063 * 4 2 1 16 16 C 1.54912 * 101.58344 * 324.49603 * 15 4 2 17 17 N 1.47019 * 109.88421 * 238.89772 * 2 1 3 18 18 C 1.34779 * 125.64819 * 61.60375 * 17 2 1 19 19 O 1.21687 * 119.99592 * 0.02562 * 18 17 2 20 20 C 1.46715 * 120.00452 * 180.02562 * 18 17 2 21 21 O 1.35348 * 126.64479 * 0.02562 * 20 18 17 22 22 C 1.33661 * 107.68620 * 180.02562 * 21 20 18 23 23 N 1.30617 * 109.15544 * 0.02562 * 22 21 20 24 24 C 1.33693 * 108.99386 * 359.72978 * 23 22 21 25 25 C 1.50700 * 126.27045 * 180.26959 * 24 23 22 26 26 F 1.39900 * 109.46846 * 120.18888 * 25 24 23 27 27 F 1.39896 * 109.47073 * 240.18731 * 25 24 23 28 28 H 1.09002 * 109.47324 * 293.64361 * 1 2 3 29 29 H 1.09004 * 109.47034 * 53.64398 * 1 2 3 30 30 H 1.08997 * 109.47287 * 173.63575 * 1 2 3 31 31 H 0.97004 * 119.99792 * 84.40770 * 6 4 2 32 32 H 0.97003 * 119.99624 * 180.02562 * 10 9 7 33 33 H 1.08996 * 111.00719 * 82.57090 * 15 4 2 34 34 H 1.09005 * 111.00447 * 206.38714 * 15 4 2 35 35 H 1.08992 * 110.36836 * 155.85074 * 16 15 4 36 36 H 1.09007 * 110.36539 * 278.06703 * 16 15 4 37 37 H 1.08002 * 125.42242 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.47473 * 0.18953 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3524 -0.0481 2.0223 6 7 1.0471 -1.6855 1.7475 7 6 0.2102 -1.3081 2.7635 8 1 0.2927 -0.3204 3.1924 9 6 -0.7450 -2.1948 3.2415 10 7 -0.8459 -3.3983 2.7184 11 14 -1.8862 -1.6802 4.6279 12 1 -1.2690 -2.0294 5.9326 13 1 -2.1130 -0.2140 4.5641 14 1 -3.1843 -2.3883 4.4892 15 6 3.2875 -1.5143 0.6925 16 6 2.8145 -1.8795 -0.7367 17 7 2.0300 -0.7142 -1.1838 18 6 1.8074 -0.3623 -2.4657 19 8 1.1413 0.6241 -2.7188 20 6 2.3680 -1.1685 -3.5557 21 8 3.1231 -2.2846 -3.4292 22 6 3.4281 -2.7101 -4.6590 23 7 2.8937 -1.9035 -5.5364 24 6 2.2256 -0.9410 -4.8925 25 6 1.4587 0.1900 -5.5278 26 9 0.1176 0.1225 -5.1351 27 9 2.0037 1.4114 -5.1175 28 1 -0.3634 0.4121 0.9414 29 1 -0.3633 0.6092 -0.8277 30 1 -0.3634 -1.0213 -0.1139 31 1 0.9727 -2.5725 1.3619 32 1 -1.5136 -4.0178 3.0521 33 1 4.1653 -0.8689 0.6605 34 1 3.4855 -2.4107 1.2802 35 1 3.6716 -2.0340 -1.3921 36 1 2.1901 -2.7727 -0.7129 37 1 4.0219 -3.5820 -4.8904 38 1 1.5240 0.1091 -6.6127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986986558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:21 Heat of formation + Delta-G solvation = -104.099059 kcal Electronic energy + Delta-G solvation = -27383.797979 eV Core-core repulsion = 23091.905790 eV Total energy + Delta-G solvation = -4291.892189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.02762 -48.05947 -44.71245 -41.25495 -39.00773 -36.52456 -35.74492 -33.47836 -32.47649 -32.03244 -30.58167 -28.15892 -26.89897 -25.43517 -25.11225 -23.80272 -22.93913 -21.59591 -20.51616 -19.42068 -19.01384 -18.57915 -18.30169 -18.26894 -17.84024 -17.42607 -16.75920 -16.39442 -16.27157 -15.56802 -15.44150 -15.26679 -15.01462 -14.93128 -14.54400 -14.40520 -14.19453 -13.91825 -13.89755 -13.20359 -13.08147 -12.81145 -12.79406 -12.53767 -12.49047 -12.33708 -12.22954 -12.12439 -11.88880 -11.71501 -11.54825 -11.37488 -10.93607 -10.51067 -9.76236 -9.01255 -7.91936 -5.18944 -0.54870 1.11412 1.13308 1.49045 1.50666 1.57372 1.75459 1.87900 2.27816 2.57722 3.08081 3.13108 3.24581 3.41927 3.63538 3.80526 3.87132 3.88789 4.00796 4.04129 4.21092 4.25289 4.34393 4.48748 4.54509 4.69724 4.78935 4.92570 4.98126 5.08254 5.20935 5.23427 5.37196 5.49955 5.58934 6.14086 6.28822 6.33111 6.78068 7.37789 8.09494 8.33242 9.31117 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.003825 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.318801 B = 7318.946452 C = 7795.601527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.114 3.886 3 H 0.076 0.924 4 C 0.164 3.836 5 H 0.087 0.913 6 N -0.716 5.716 7 C -0.227 4.227 8 H 0.079 0.921 9 C -0.068 4.068 10 N -0.967 5.967 11 Si 0.960 3.040 12 H -0.287 1.287 13 H -0.272 1.272 14 H -0.303 1.303 15 C -0.128 4.128 16 C 0.102 3.898 17 N -0.591 5.591 18 C 0.597 3.403 19 O -0.534 6.534 20 C -0.065 4.065 21 O -0.177 6.177 22 C 0.235 3.765 23 N -0.492 5.492 24 C -0.023 4.023 25 C 0.352 3.648 26 F -0.201 7.201 27 F -0.197 7.197 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.374 0.626 32 H 0.248 0.752 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.322 0.678 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.918 1.205 -15.822 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.008 3.992 3 H 0.094 0.906 4 C 0.053 3.947 5 H 0.105 0.895 6 N -0.353 5.353 7 C -0.359 4.359 8 H 0.096 0.904 9 C -0.261 4.261 10 N -0.617 5.617 11 Si 0.791 3.209 12 H -0.214 1.214 13 H -0.197 1.197 14 H -0.231 1.231 15 C -0.167 4.167 16 C -0.019 4.019 17 N -0.323 5.323 18 C 0.383 3.617 19 O -0.413 6.413 20 C -0.123 4.123 21 O -0.063 6.063 22 C 0.011 3.989 23 N -0.219 5.219 24 C -0.147 4.147 25 C 0.298 3.702 26 F -0.182 7.182 27 F -0.178 7.178 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.207 0.793 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.336 0.664 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.523 1.781 -16.423 21.349 hybrid contribution -1.318 -0.235 1.410 1.944 sum 12.205 1.546 -15.014 19.410 Atomic orbital electron populations 1.21583 0.95530 1.00302 1.00246 1.22685 0.94534 0.96389 0.85550 0.90572 1.21497 0.88866 0.92203 0.92168 0.89530 1.42438 1.38270 1.14180 1.40461 1.19531 1.09377 0.98118 1.08831 0.90351 1.25367 1.01731 0.96466 1.02499 1.69788 1.38395 1.07312 1.46250 0.85332 0.78220 0.77538 0.79843 1.21427 1.19726 1.23065 1.23093 0.97694 1.02113 0.93785 1.22542 0.95139 0.87265 0.96997 1.48548 1.50823 1.28779 1.04122 1.16337 0.80790 0.83692 0.80845 1.90918 1.40493 1.27065 1.82870 1.22826 1.02163 0.91144 0.96142 1.84682 1.52288 1.33745 1.35566 1.29834 0.95686 0.99255 0.74161 1.70201 1.12632 1.04275 1.34795 1.22510 1.02455 0.99689 0.90031 1.19764 0.73815 0.76954 0.99706 1.93035 1.35430 1.96191 1.93569 1.93023 1.85718 1.45962 1.93121 0.92145 0.94748 0.94754 0.79315 0.94299 0.87737 0.88892 0.87958 0.92210 0.66408 0.81084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 8.02 71.98 0.58 -4.41 16 2 C 0.11 4.04 3.44 45.34 0.16 4.20 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.16 5.65 3.52 46.18 0.16 5.81 16 5 H 0.09 2.87 8.06 -2.38 -0.02 2.85 16 6 N -0.72 -32.18 3.91 -317.32 -1.24 -33.42 16 7 C -0.23 -11.55 8.40 84.04 0.71 -10.84 16 8 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 9 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 10 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 11 Si 0.96 44.90 29.55 68.60 2.03 46.93 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 15 C -0.13 -3.30 6.69 31.98 0.21 -3.08 16 16 C 0.10 2.72 6.12 86.86 0.53 3.25 16 17 N -0.59 -19.34 3.06 -792.69 -2.43 -21.77 16 18 C 0.60 20.78 7.61 86.46 0.66 21.44 16 19 O -0.53 -21.78 13.07 -4.31 -0.06 -21.84 16 20 C -0.07 -1.83 6.96 24.04 0.17 -1.67 16 21 O -0.18 -3.55 8.07 -7.11 -0.06 -3.60 16 22 C 0.24 2.98 13.21 130.42 1.72 4.70 16 23 N -0.49 -9.69 11.26 -303.13 -3.41 -13.10 16 24 C -0.02 -0.58 6.59 41.83 0.28 -0.31 16 25 C 0.35 8.98 5.10 71.24 0.36 9.34 16 26 F -0.20 -6.42 16.21 44.97 0.73 -5.69 16 27 F -0.20 -5.89 16.19 44.97 0.73 -5.17 16 28 H 0.06 2.64 7.12 -2.39 -0.02 2.62 16 29 H 0.03 1.46 7.07 -2.39 -0.02 1.44 16 30 H 0.03 1.62 7.63 -2.39 -0.02 1.61 16 31 H 0.37 18.42 7.84 -92.71 -0.73 17.70 16 32 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.10 2.13 6.25 -2.39 -0.01 2.11 16 36 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.32 -0.50 8.06 -2.91 -0.02 -0.52 16 38 H 0.17 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -73.03 325.74 2.97 -70.07 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.39 Total: 18.90 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.00 Total: 25.18 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -6.80 Total: -124.76 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.11 Total: -25.44 kcal Atomic # 9 Polarization: -12.32 SS G_CDS: 1.46 Total: -10.86 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -73.03 2.97 -70.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986986558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.034 kcal (2) G-P(sol) polarization free energy of solvation -73.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds