Wall clock time and date at job start Tue Mar 31 2020 10:58:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08994 * 110.33005 * 2 1
4 4 C 1.54917 * 110.36299 * 122.23552 * 2 1 3
5 5 C 1.55161 * 101.57967 * 155.84756 * 4 2 1
6 6 H 1.09001 * 110.71602 * 83.03593 * 5 4 2
7 7 N 1.46499 * 110.71670 * 206.13326 * 5 4 2
8 8 C 1.36932 * 119.99549 * 205.00098 * 7 5 4
9 9 H 1.08003 * 120.00354 * 0.02562 * 8 7 5
10 10 C 1.38817 * 120.00011 * 179.97438 * 8 7 5
11 11 N 1.31619 * 120.00154 * 180.02562 * 10 8 7
12 12 Si 1.86798 * 119.99635 * 0.02562 * 10 8 7
13 13 H 1.48506 * 109.47297 * 269.99668 * 12 10 8
14 14 H 1.48503 * 109.47261 * 149.99848 * 12 10 8
15 15 H 1.48500 * 109.47454 * 29.99841 * 12 10 8
16 16 C 1.54319 * 102.94260 * 324.49707 * 5 4 2
17 17 N 1.47019 * 107.27192 * 22.19190 * 16 5 4
18 18 C 1.34778 * 125.64867 * 181.02155 * 17 16 5
19 19 O 1.21690 * 120.00179 * 180.02562 * 18 17 16
20 20 C 1.46725 * 119.99970 * 0.04565 * 18 17 16
21 21 O 1.35347 * 126.64253 * 359.68527 * 20 18 17
22 22 C 1.33667 * 107.67964 * 179.87446 * 21 20 18
23 23 N 1.30616 * 109.15844 * 0.39625 * 22 21 20
24 24 C 1.33693 * 108.99366 * 359.75136 * 23 22 21
25 25 C 1.50699 * 126.27163 * 179.97438 * 24 23 22
26 26 F 1.39896 * 109.47122 * 120.02948 * 25 24 23
27 27 F 1.39904 * 109.47131 * 240.02747 * 25 24 23
28 28 H 1.08993 * 109.47142 * 297.76765 * 1 2 3
29 29 H 1.09000 * 109.46379 * 57.76982 * 1 2 3
30 30 H 1.09002 * 109.47016 * 177.76193 * 1 2 3
31 31 H 1.09001 * 111.00392 * 37.77169 * 4 2 1
32 32 H 1.08997 * 110.99766 * 273.92042 * 4 2 1
33 33 H 0.96993 * 120.00302 * 25.00062 * 7 5 4
34 34 H 0.96998 * 119.99442 * 179.97438 * 11 10 8
35 35 H 1.08999 * 109.88186 * 141.61165 * 16 5 4
36 36 H 1.09004 * 109.88116 * 262.77516 * 16 5 4
37 37 H 1.08000 * 125.41443 * 180.15077 * 22 21 20
38 38 H 1.08998 * 109.47026 * 0.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9087 1.0220 0.0000
4 6 2.0691 -0.7747 1.2285
5 6 3.4778 -1.1991 0.7355
6 1 4.1951 -0.3904 0.8756
7 7 3.9249 -2.4115 1.4257
8 6 5.2629 -2.6748 1.5495
9 1 5.9887 -1.9885 1.1387
10 6 5.6867 -3.8233 2.2039
11 7 6.9728 -4.0762 2.3233
12 14 4.4315 -5.0100 2.9150
13 1 4.1239 -4.6246 4.3158
14 1 4.9840 -6.3882 2.8908
15 1 3.1886 -4.9608 2.1038
16 6 3.2494 -1.4777 -0.7650
17 7 2.0432 -0.7398 -1.1674
18 6 1.4974 -0.7389 -2.3997
19 8 0.4933 -0.0877 -2.6200
20 6 2.1136 -1.5236 -3.4755
21 8 3.2273 -2.2870 -3.3825
22 6 3.4469 -2.8327 -4.5828
23 7 2.5211 -2.4311 -5.4121
24 6 1.6784 -1.6203 -4.7640
25 6 0.4696 -0.9377 -5.3505
26 9 -0.6772 -1.3475 -4.6620
27 9 0.6139 0.4488 -5.2326
28 1 -0.3633 0.4787 0.9093
29 1 -0.3632 0.5481 -0.8693
30 1 -0.3633 -1.0269 -0.0401
31 1 1.4510 -1.6466 1.4426
32 1 2.1398 -0.1242 2.1002
33 1 3.2732 -3.0277 1.7949
34 1 7.2688 -4.8786 2.7810
35 1 4.1065 -1.1295 -1.3414
36 1 3.1014 -2.5457 -0.9254
37 1 4.2625 -3.4965 -4.8288
38 1 0.3764 -1.2051 -6.4031
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000989450608.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:58:08
Heat of formation + Delta-G solvation = -79.910760 kcal
Electronic energy + Delta-G solvation = -27202.646607 eV
Core-core repulsion = 22911.803301 eV
Total energy + Delta-G solvation = -4290.843305 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.118 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-49.00531 -47.01115 -43.77898 -40.11002 -37.66960 -35.52287 -34.43809 -32.31752
-31.67065 -30.86217 -29.07936 -27.23040 -25.59965 -24.38271 -23.54348 -22.65009
-21.39331 -20.55195 -19.73920 -18.04530 -17.83227 -17.58808 -17.33533 -17.05700
-16.83843 -16.43657 -15.79904 -15.31343 -14.71583 -14.40367 -14.18099 -13.89934
-13.85227 -13.49225 -13.38045 -13.34210 -12.88612 -12.71585 -12.38678 -12.22894
-12.04930 -11.87811 -11.68326 -11.58668 -11.28882 -11.18380 -10.93973 -10.80819
-10.53324 -10.21920 -9.98789 -9.74078 -9.50876 -9.13683 -8.60328 -7.50865
-5.93059 -3.31733 0.45182 1.97584 2.11321 2.88472 2.90219 3.13074
3.26368 3.29442 3.35628 3.89846 4.06962 4.20250 4.44519 4.63637
4.83792 4.87667 4.93814 4.95365 5.07009 5.19752 5.25836 5.42326
5.44282 5.60094 5.63703 5.67927 5.80360 5.89819 6.02403 6.18499
6.23428 6.29708 6.46446 6.62154 7.06427 7.40292 7.80089 7.91956
8.25295 9.01319 9.73593 9.91206 11.24380
Molecular weight = 315.12amu
Principal moments of inertia in cm(-1)
A = 0.017185 B = 0.004208 C = 0.003671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1628.975419 B = 6652.355773 C = 7625.346506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.138 3.862
3 H 0.082 0.918
4 C -0.141 4.141
5 C 0.179 3.821
6 H 0.080 0.920
7 N -0.735 5.735
8 C -0.256 4.256
9 H 0.093 0.907
10 C 0.012 3.988
11 N -0.927 5.927
12 Si 0.883 3.117
13 H -0.282 1.282
14 H -0.289 1.289
15 H -0.277 1.277
16 C 0.072 3.928
17 N -0.595 5.595
18 C 0.608 3.392
19 O -0.502 6.502
20 C -0.038 4.038
21 O -0.168 6.168
22 C 0.207 3.793
23 N -0.475 5.475
24 C -0.027 4.027
25 C 0.364 3.636
26 F -0.183 7.183
27 F -0.183 7.183
28 H 0.063 0.937
29 H 0.083 0.917
30 H 0.054 0.946
31 H 0.075 0.925
32 H 0.087 0.913
33 H 0.365 0.635
34 H 0.262 0.738
35 H 0.068 0.932
36 H 0.076 0.924
37 H 0.264 0.736
38 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.152 5.728 -12.685 17.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.036 3.964
3 H 0.100 0.900
4 C -0.180 4.180
5 C 0.067 3.933
6 H 0.098 0.902
7 N -0.376 5.376
8 C -0.386 4.386
9 H 0.111 0.889
10 C -0.184 4.184
11 N -0.574 5.574
12 Si 0.712 3.288
13 H -0.208 1.208
14 H -0.216 1.216
15 H -0.203 1.203
16 C -0.054 4.054
17 N -0.328 5.328
18 C 0.393 3.607
19 O -0.379 6.379
20 C -0.096 4.096
21 O -0.052 6.052
22 C -0.019 4.019
23 N -0.203 5.203
24 C -0.151 4.151
25 C 0.309 3.691
26 F -0.164 7.164
27 F -0.164 7.164
28 H 0.082 0.918
29 H 0.102 0.898
30 H 0.073 0.927
31 H 0.094 0.906
32 H 0.106 0.894
33 H 0.198 0.802
34 H 0.072 0.928
35 H 0.086 0.914
36 H 0.094 0.906
37 H 0.279 0.721
38 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -11.426 5.892 -13.383 18.557
hybrid contribution -0.376 -1.087 1.143 1.622
sum -11.802 4.804 -12.240 17.669
Atomic orbital electron populations
1.22154 0.93792 1.02856 1.03213 1.21972 0.95146 0.95525 0.83745
0.90027 1.23251 0.97696 1.00528 0.96566 1.21144 0.93464 0.90717
0.87977 0.90205 1.42731 1.05199 1.23127 1.66583 1.19074 0.81684
1.06100 1.31724 0.88919 1.24672 0.95572 0.97977 1.00227 1.69695
1.12597 1.27864 1.47226 0.86598 0.81195 0.81441 0.79523 1.20822
1.21565 1.20340 1.23421 0.85010 0.96718 1.00245 1.48518 1.28596
1.47447 1.08275 1.16002 0.83498 0.81039 0.80141 1.90900 1.23558
1.42541 1.80886 1.23266 0.89366 0.99504 0.97432 1.84763 1.37090
1.47405 1.35968 1.28451 0.99224 0.97215 0.76970 1.70153 1.04239
1.12481 1.33432 1.22347 1.00205 1.01628 0.90966 1.19143 0.78401
0.75522 0.95994 1.93060 1.50659 1.90009 1.82700 1.93060 1.95676
1.30426 1.97275 0.91823 0.89836 0.92660 0.90589 0.89426 0.80188
0.92819 0.91386 0.90598 0.72096 0.85323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.07 8.59 37.16 0.32 -1.75 16
2 C 0.14 1.86 3.77 -66.41 -0.25 1.61 16
3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
4 C -0.14 -1.96 6.13 -24.58 -0.15 -2.11 16
5 C 0.18 3.05 3.61 -66.10 -0.24 2.81 16
6 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16
7 N -0.74 -15.74 4.95 -51.65 -0.26 -15.99 16
8 C -0.26 -6.65 10.44 -15.06 -0.16 -6.80 16
9 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16
10 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16
11 N -0.93 -27.56 13.97 55.49 0.78 -26.78 16
12 Si 0.88 20.82 27.73 -169.99 -4.71 16.11 16
13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
15 H -0.28 -6.16 6.52 56.52 0.37 -5.80 16
16 C 0.07 1.16 5.31 -3.07 -0.02 1.14 16
17 N -0.60 -9.04 3.24 -164.56 -0.53 -9.57 16
18 C 0.61 9.71 7.60 -12.83 -0.10 9.61 16
19 O -0.50 -8.61 11.65 5.20 0.06 -8.55 16
20 C -0.04 -0.56 6.98 -36.84 -0.26 -0.82 16
21 O -0.17 -2.24 8.51 4.41 0.04 -2.21 16
22 C 0.21 2.11 13.21 52.25 0.69 2.80 16
23 N -0.48 -5.76 11.26 -10.88 -0.12 -5.88 16
24 C -0.03 -0.36 6.59 -82.46 -0.54 -0.91 16
25 C 0.36 4.51 5.10 36.01 0.18 4.70 16
26 F -0.18 -2.61 16.20 2.25 0.04 -2.58 16
27 F -0.18 -2.59 16.20 2.25 0.04 -2.55 16
28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.08 1.19 6.09 -51.93 -0.32 0.87 16
30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
31 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16
32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
33 H 0.36 7.76 5.62 -40.82 -0.23 7.53 16
34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
35 H 0.07 1.10 7.81 -51.93 -0.41 0.69 16
36 H 0.08 1.34 7.59 -51.93 -0.39 0.94 16
37 H 0.26 1.27 8.06 -52.49 -0.42 0.84 16
38 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 325.53 15.07 4.91 4.91
Total: -1.00 -32.25 325.53 -4.69 -36.94
By element:
Atomic # 1 Polarization: 9.94 SS G_CDS: -4.30 Total: 5.64 kcal
Atomic # 6 Polarization: 11.14 SS G_CDS: -0.61 Total: 10.52 kcal
Atomic # 7 Polarization: -58.09 SS G_CDS: -0.14 Total: -58.23 kcal
Atomic # 8 Polarization: -10.86 SS G_CDS: 0.10 Total: -10.76 kcal
Atomic # 9 Polarization: -5.20 SS G_CDS: 0.07 Total: -5.12 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.11 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -32.25 -4.69 -36.94 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989450608.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.968 kcal
(2) G-P(sol) polarization free energy of solvation -32.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.693 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds