Wall clock time and date at job start Tue Mar 31 2020 10:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.33005 * 2 1 4 4 C 1.54917 * 110.36299 * 122.23552 * 2 1 3 5 5 C 1.55161 * 101.57967 * 155.84756 * 4 2 1 6 6 H 1.09001 * 110.71602 * 83.03593 * 5 4 2 7 7 N 1.46499 * 110.71670 * 206.13326 * 5 4 2 8 8 C 1.36932 * 119.99549 * 205.00098 * 7 5 4 9 9 H 1.08003 * 120.00354 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00011 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00154 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99635 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 269.99668 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99848 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99841 * 12 10 8 16 16 C 1.54319 * 102.94260 * 324.49707 * 5 4 2 17 17 N 1.47019 * 107.27192 * 22.19190 * 16 5 4 18 18 C 1.34778 * 125.64867 * 181.02155 * 17 16 5 19 19 O 1.21690 * 120.00179 * 180.02562 * 18 17 16 20 20 C 1.46725 * 119.99970 * 0.04565 * 18 17 16 21 21 O 1.35347 * 126.64253 * 359.68527 * 20 18 17 22 22 C 1.33667 * 107.67964 * 179.87446 * 21 20 18 23 23 N 1.30616 * 109.15844 * 0.39625 * 22 21 20 24 24 C 1.33693 * 108.99366 * 359.75136 * 23 22 21 25 25 C 1.50699 * 126.27163 * 179.97438 * 24 23 22 26 26 F 1.39896 * 109.47122 * 120.02948 * 25 24 23 27 27 F 1.39904 * 109.47131 * 240.02747 * 25 24 23 28 28 H 1.08993 * 109.47142 * 297.76765 * 1 2 3 29 29 H 1.09000 * 109.46379 * 57.76982 * 1 2 3 30 30 H 1.09002 * 109.47016 * 177.76193 * 1 2 3 31 31 H 1.09001 * 111.00392 * 37.77169 * 4 2 1 32 32 H 1.08997 * 110.99766 * 273.92042 * 4 2 1 33 33 H 0.96993 * 120.00302 * 25.00062 * 7 5 4 34 34 H 0.96998 * 119.99442 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.88186 * 141.61165 * 16 5 4 36 36 H 1.09004 * 109.88116 * 262.77516 * 16 5 4 37 37 H 1.08000 * 125.41443 * 180.15077 * 22 21 20 38 38 H 1.08998 * 109.47026 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0691 -0.7747 1.2285 5 6 3.4778 -1.1991 0.7355 6 1 4.1951 -0.3904 0.8756 7 7 3.9249 -2.4115 1.4257 8 6 5.2629 -2.6748 1.5495 9 1 5.9887 -1.9885 1.1387 10 6 5.6867 -3.8233 2.2039 11 7 6.9728 -4.0762 2.3233 12 14 4.4315 -5.0100 2.9150 13 1 4.1239 -4.6246 4.3158 14 1 4.9840 -6.3882 2.8908 15 1 3.1886 -4.9608 2.1038 16 6 3.2494 -1.4777 -0.7650 17 7 2.0432 -0.7398 -1.1674 18 6 1.4974 -0.7389 -2.3997 19 8 0.4933 -0.0877 -2.6200 20 6 2.1136 -1.5236 -3.4755 21 8 3.2273 -2.2870 -3.3825 22 6 3.4469 -2.8327 -4.5828 23 7 2.5211 -2.4311 -5.4121 24 6 1.6784 -1.6203 -4.7640 25 6 0.4696 -0.9377 -5.3505 26 9 -0.6772 -1.3475 -4.6620 27 9 0.6139 0.4488 -5.2326 28 1 -0.3633 0.4787 0.9093 29 1 -0.3632 0.5481 -0.8693 30 1 -0.3633 -1.0269 -0.0401 31 1 1.4510 -1.6466 1.4426 32 1 2.1398 -0.1242 2.1002 33 1 3.2732 -3.0277 1.7949 34 1 7.2688 -4.8786 2.7810 35 1 4.1065 -1.1295 -1.3414 36 1 3.1014 -2.5457 -0.9254 37 1 4.2625 -3.4965 -4.8288 38 1 0.3764 -1.2051 -6.4031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989450608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:08 Heat of formation + Delta-G solvation = -79.910760 kcal Electronic energy + Delta-G solvation = -27202.646607 eV Core-core repulsion = 22911.803301 eV Total energy + Delta-G solvation = -4290.843305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.00531 -47.01115 -43.77898 -40.11002 -37.66960 -35.52287 -34.43809 -32.31752 -31.67065 -30.86217 -29.07936 -27.23040 -25.59965 -24.38271 -23.54348 -22.65009 -21.39331 -20.55195 -19.73920 -18.04530 -17.83227 -17.58808 -17.33533 -17.05700 -16.83843 -16.43657 -15.79904 -15.31343 -14.71583 -14.40367 -14.18099 -13.89934 -13.85227 -13.49225 -13.38045 -13.34210 -12.88612 -12.71585 -12.38678 -12.22894 -12.04930 -11.87811 -11.68326 -11.58668 -11.28882 -11.18380 -10.93973 -10.80819 -10.53324 -10.21920 -9.98789 -9.74078 -9.50876 -9.13683 -8.60328 -7.50865 -5.93059 -3.31733 0.45182 1.97584 2.11321 2.88472 2.90219 3.13074 3.26368 3.29442 3.35628 3.89846 4.06962 4.20250 4.44519 4.63637 4.83792 4.87667 4.93814 4.95365 5.07009 5.19752 5.25836 5.42326 5.44282 5.60094 5.63703 5.67927 5.80360 5.89819 6.02403 6.18499 6.23428 6.29708 6.46446 6.62154 7.06427 7.40292 7.80089 7.91956 8.25295 9.01319 9.73593 9.91206 11.24380 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.004208 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.975419 B = 6652.355773 C = 7625.346506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.082 0.918 4 C -0.141 4.141 5 C 0.179 3.821 6 H 0.080 0.920 7 N -0.735 5.735 8 C -0.256 4.256 9 H 0.093 0.907 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.883 3.117 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.072 3.928 17 N -0.595 5.595 18 C 0.608 3.392 19 O -0.502 6.502 20 C -0.038 4.038 21 O -0.168 6.168 22 C 0.207 3.793 23 N -0.475 5.475 24 C -0.027 4.027 25 C 0.364 3.636 26 F -0.183 7.183 27 F -0.183 7.183 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.365 0.635 34 H 0.262 0.738 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.264 0.736 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 5.728 -12.685 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.100 0.900 4 C -0.180 4.180 5 C 0.067 3.933 6 H 0.098 0.902 7 N -0.376 5.376 8 C -0.386 4.386 9 H 0.111 0.889 10 C -0.184 4.184 11 N -0.574 5.574 12 Si 0.712 3.288 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.054 4.054 17 N -0.328 5.328 18 C 0.393 3.607 19 O -0.379 6.379 20 C -0.096 4.096 21 O -0.052 6.052 22 C -0.019 4.019 23 N -0.203 5.203 24 C -0.151 4.151 25 C 0.309 3.691 26 F -0.164 7.164 27 F -0.164 7.164 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.198 0.802 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.279 0.721 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.426 5.892 -13.383 18.557 hybrid contribution -0.376 -1.087 1.143 1.622 sum -11.802 4.804 -12.240 17.669 Atomic orbital electron populations 1.22154 0.93792 1.02856 1.03213 1.21972 0.95146 0.95525 0.83745 0.90027 1.23251 0.97696 1.00528 0.96566 1.21144 0.93464 0.90717 0.87977 0.90205 1.42731 1.05199 1.23127 1.66583 1.19074 0.81684 1.06100 1.31724 0.88919 1.24672 0.95572 0.97977 1.00227 1.69695 1.12597 1.27864 1.47226 0.86598 0.81195 0.81441 0.79523 1.20822 1.21565 1.20340 1.23421 0.85010 0.96718 1.00245 1.48518 1.28596 1.47447 1.08275 1.16002 0.83498 0.81039 0.80141 1.90900 1.23558 1.42541 1.80886 1.23266 0.89366 0.99504 0.97432 1.84763 1.37090 1.47405 1.35968 1.28451 0.99224 0.97215 0.76970 1.70153 1.04239 1.12481 1.33432 1.22347 1.00205 1.01628 0.90966 1.19143 0.78401 0.75522 0.95994 1.93060 1.50659 1.90009 1.82700 1.93060 1.95676 1.30426 1.97275 0.91823 0.89836 0.92660 0.90589 0.89426 0.80188 0.92819 0.91386 0.90598 0.72096 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.59 37.16 0.32 -1.75 16 2 C 0.14 1.86 3.77 -66.41 -0.25 1.61 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -1.96 6.13 -24.58 -0.15 -2.11 16 5 C 0.18 3.05 3.61 -66.10 -0.24 2.81 16 6 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 7 N -0.74 -15.74 4.95 -51.65 -0.26 -15.99 16 8 C -0.26 -6.65 10.44 -15.06 -0.16 -6.80 16 9 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 10 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 11 N -0.93 -27.56 13.97 55.49 0.78 -26.78 16 12 Si 0.88 20.82 27.73 -169.99 -4.71 16.11 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.16 6.52 56.52 0.37 -5.80 16 16 C 0.07 1.16 5.31 -3.07 -0.02 1.14 16 17 N -0.60 -9.04 3.24 -164.56 -0.53 -9.57 16 18 C 0.61 9.71 7.60 -12.83 -0.10 9.61 16 19 O -0.50 -8.61 11.65 5.20 0.06 -8.55 16 20 C -0.04 -0.56 6.98 -36.84 -0.26 -0.82 16 21 O -0.17 -2.24 8.51 4.41 0.04 -2.21 16 22 C 0.21 2.11 13.21 52.25 0.69 2.80 16 23 N -0.48 -5.76 11.26 -10.88 -0.12 -5.88 16 24 C -0.03 -0.36 6.59 -82.46 -0.54 -0.91 16 25 C 0.36 4.51 5.10 36.01 0.18 4.70 16 26 F -0.18 -2.61 16.20 2.25 0.04 -2.58 16 27 F -0.18 -2.59 16.20 2.25 0.04 -2.55 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.19 6.09 -51.93 -0.32 0.87 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.36 7.76 5.62 -40.82 -0.23 7.53 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.10 7.81 -51.93 -0.41 0.69 16 36 H 0.08 1.34 7.59 -51.93 -0.39 0.94 16 37 H 0.26 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -32.25 325.53 -4.69 -36.94 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.30 Total: 5.64 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -0.61 Total: 10.52 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.14 Total: -58.23 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.10 Total: -10.76 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.07 Total: -5.12 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.25 -4.69 -36.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989450608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.968 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds