Wall clock time and date at job start Tue Mar 31 2020 10:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.33005 * 2 1 4 4 C 1.54917 * 110.36299 * 122.23552 * 2 1 3 5 5 C 1.55161 * 101.57967 * 155.84756 * 4 2 1 6 6 H 1.09001 * 110.71602 * 83.03593 * 5 4 2 7 7 N 1.46499 * 110.71670 * 206.13326 * 5 4 2 8 8 C 1.36932 * 119.99549 * 205.00098 * 7 5 4 9 9 H 1.08003 * 120.00354 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00011 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00154 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99635 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 269.99668 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99848 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99841 * 12 10 8 16 16 C 1.54319 * 102.94260 * 324.49707 * 5 4 2 17 17 N 1.47019 * 107.27192 * 22.19190 * 16 5 4 18 18 C 1.34778 * 125.64867 * 181.02155 * 17 16 5 19 19 O 1.21690 * 120.00179 * 180.02562 * 18 17 16 20 20 C 1.46725 * 119.99970 * 0.04565 * 18 17 16 21 21 O 1.35347 * 126.64253 * 359.68527 * 20 18 17 22 22 C 1.33667 * 107.67964 * 179.87446 * 21 20 18 23 23 N 1.30616 * 109.15844 * 0.39625 * 22 21 20 24 24 C 1.33693 * 108.99366 * 359.75136 * 23 22 21 25 25 C 1.50699 * 126.27163 * 179.97438 * 24 23 22 26 26 F 1.39896 * 109.47122 * 120.02948 * 25 24 23 27 27 F 1.39904 * 109.47131 * 240.02747 * 25 24 23 28 28 H 1.08993 * 109.47142 * 297.76765 * 1 2 3 29 29 H 1.09000 * 109.46379 * 57.76982 * 1 2 3 30 30 H 1.09002 * 109.47016 * 177.76193 * 1 2 3 31 31 H 1.09001 * 111.00392 * 37.77169 * 4 2 1 32 32 H 1.08997 * 110.99766 * 273.92042 * 4 2 1 33 33 H 0.96993 * 120.00302 * 25.00062 * 7 5 4 34 34 H 0.96998 * 119.99442 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.88186 * 141.61165 * 16 5 4 36 36 H 1.09004 * 109.88116 * 262.77516 * 16 5 4 37 37 H 1.08000 * 125.41443 * 180.15077 * 22 21 20 38 38 H 1.08998 * 109.47026 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0691 -0.7747 1.2285 5 6 3.4778 -1.1991 0.7355 6 1 4.1951 -0.3904 0.8756 7 7 3.9249 -2.4115 1.4257 8 6 5.2629 -2.6748 1.5495 9 1 5.9887 -1.9885 1.1387 10 6 5.6867 -3.8233 2.2039 11 7 6.9728 -4.0762 2.3233 12 14 4.4315 -5.0100 2.9150 13 1 4.1239 -4.6246 4.3158 14 1 4.9840 -6.3882 2.8908 15 1 3.1886 -4.9608 2.1038 16 6 3.2494 -1.4777 -0.7650 17 7 2.0432 -0.7398 -1.1674 18 6 1.4974 -0.7389 -2.3997 19 8 0.4933 -0.0877 -2.6200 20 6 2.1136 -1.5236 -3.4755 21 8 3.2273 -2.2870 -3.3825 22 6 3.4469 -2.8327 -4.5828 23 7 2.5211 -2.4311 -5.4121 24 6 1.6784 -1.6203 -4.7640 25 6 0.4696 -0.9377 -5.3505 26 9 -0.6772 -1.3475 -4.6620 27 9 0.6139 0.4488 -5.2326 28 1 -0.3633 0.4787 0.9093 29 1 -0.3632 0.5481 -0.8693 30 1 -0.3633 -1.0269 -0.0401 31 1 1.4510 -1.6466 1.4426 32 1 2.1398 -0.1242 2.1002 33 1 3.2732 -3.0277 1.7949 34 1 7.2688 -4.8786 2.7810 35 1 4.1065 -1.1295 -1.3414 36 1 3.1014 -2.5457 -0.9254 37 1 4.2625 -3.4965 -4.8288 38 1 0.3764 -1.2051 -6.4031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989450608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:07 Heat of formation + Delta-G solvation = -104.137852 kcal Electronic energy + Delta-G solvation = -27203.697172 eV Core-core repulsion = 22911.803301 eV Total energy + Delta-G solvation = -4291.893871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.03223 -48.05547 -44.74415 -41.31839 -38.96006 -36.54220 -36.07874 -33.61784 -33.33805 -31.87729 -30.62156 -28.25468 -26.77087 -25.76444 -24.92791 -23.73828 -22.52466 -21.96505 -20.86272 -19.71663 -19.04986 -18.61576 -18.30430 -18.20620 -17.92327 -17.58856 -16.93806 -16.55586 -16.29118 -15.70449 -15.35745 -15.28011 -14.97368 -14.92402 -14.57143 -14.41572 -14.40152 -13.91279 -13.76320 -13.58252 -13.23307 -13.06355 -12.91767 -12.84572 -12.57071 -12.42720 -12.25019 -12.13548 -12.02097 -11.84305 -11.62766 -11.18869 -10.99792 -10.53074 -9.81569 -9.40505 -8.02322 -5.38098 -0.58354 1.07467 1.12999 1.40289 1.42123 1.48945 1.71927 1.77528 2.23640 2.48308 3.06440 3.08736 3.12915 3.27108 3.52882 3.68344 3.73194 3.87189 3.88796 4.05311 4.09264 4.22244 4.24946 4.37021 4.41062 4.67345 4.71986 4.79169 4.87030 5.04217 5.06928 5.16038 5.24827 5.45121 5.76792 6.08701 6.19975 6.22619 6.73274 7.05625 7.79083 7.97693 9.18375 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.004208 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.975419 B = 6652.355773 C = 7625.346506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.095 0.905 4 C -0.127 4.127 5 C 0.171 3.829 6 H 0.078 0.922 7 N -0.738 5.738 8 C -0.234 4.234 9 H 0.065 0.935 10 C -0.054 4.054 11 N -0.979 5.979 12 Si 0.948 3.052 13 H -0.278 1.278 14 H -0.299 1.299 15 H -0.254 1.254 16 C 0.087 3.913 17 N -0.597 5.597 18 C 0.604 3.396 19 O -0.520 6.520 20 C -0.074 4.074 21 O -0.182 6.182 22 C 0.229 3.771 23 N -0.489 5.489 24 C -0.022 4.022 25 C 0.357 3.643 26 F -0.196 7.196 27 F -0.195 7.195 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.368 0.632 34 H 0.258 0.742 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.312 0.688 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 5.588 -13.178 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.113 0.887 4 C -0.166 4.166 5 C 0.061 3.939 6 H 0.096 0.904 7 N -0.380 5.380 8 C -0.364 4.364 9 H 0.083 0.917 10 C -0.246 4.246 11 N -0.629 5.629 12 Si 0.776 3.224 13 H -0.204 1.204 14 H -0.226 1.226 15 H -0.179 1.179 16 C -0.038 4.038 17 N -0.330 5.330 18 C 0.391 3.609 19 O -0.398 6.398 20 C -0.131 4.131 21 O -0.067 6.067 22 C 0.005 3.995 23 N -0.216 5.216 24 C -0.146 4.146 25 C 0.303 3.697 26 F -0.177 7.177 27 F -0.177 7.177 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.202 0.798 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.326 0.674 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.900 5.798 -13.904 19.832 hybrid contribution 0.123 -0.983 1.169 1.533 sum -12.777 4.814 -12.735 18.671 Atomic orbital electron populations 1.22060 0.93020 1.02189 1.03804 1.22144 0.95726 0.95926 0.82783 0.88681 1.23180 0.95019 1.00968 0.97445 1.21326 0.95390 0.88985 0.88249 0.90394 1.42674 1.03426 1.24615 1.67244 1.19033 0.83249 1.04764 1.29383 0.91749 1.25399 0.97258 1.00193 1.01734 1.69864 1.14930 1.28689 1.49405 0.85532 0.79507 0.78367 0.79042 1.20403 1.22618 1.17900 1.23020 0.85468 0.95994 0.99335 1.48533 1.28225 1.47482 1.08720 1.16169 0.83347 0.80939 0.80461 1.90884 1.24274 1.43405 1.81278 1.23110 0.90816 1.01460 0.97745 1.84752 1.36847 1.47719 1.37401 1.29682 0.98939 0.95438 0.75461 1.70211 1.04759 1.12972 1.33665 1.22625 1.00295 1.01031 0.90691 1.19681 0.77569 0.74737 0.97742 1.93027 1.51361 1.90080 1.83268 1.93029 1.95690 1.31526 1.97417 0.89205 0.91410 0.93702 0.90515 0.87208 0.79825 0.93307 0.91728 0.91981 0.67385 0.81185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.59 71.98 0.62 -2.99 16 2 C 0.14 3.38 3.77 45.47 0.17 3.55 16 3 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.13 -3.22 6.13 31.99 0.20 -3.02 16 5 C 0.17 5.59 3.61 46.18 0.17 5.76 16 6 H 0.08 2.60 8.09 -2.39 -0.02 2.58 16 7 N -0.74 -30.63 4.95 -317.33 -1.57 -32.20 16 8 C -0.23 -12.12 10.44 84.04 0.88 -11.24 16 9 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 10 C -0.05 -2.95 5.50 84.86 0.47 -2.49 16 11 N -0.98 -59.40 13.97 21.65 0.30 -59.10 16 12 Si 0.95 42.65 27.73 68.60 1.90 44.55 16 13 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 15 H -0.25 -10.32 6.52 99.48 0.65 -9.67 16 16 C 0.09 2.76 5.31 86.73 0.46 3.22 16 17 N -0.60 -17.57 3.24 -792.76 -2.57 -20.14 16 18 C 0.60 19.06 7.60 86.46 0.66 19.72 16 19 O -0.52 -17.74 11.65 -4.32 -0.05 -17.79 16 20 C -0.07 -2.13 6.98 24.05 0.17 -1.97 16 21 O -0.18 -4.64 8.51 -7.15 -0.06 -4.70 16 22 C 0.23 4.11 13.21 130.42 1.72 5.84 16 23 N -0.49 -10.81 11.26 -303.12 -3.41 -14.23 16 24 C -0.02 -0.56 6.59 41.83 0.28 -0.29 16 25 C 0.36 8.42 5.10 71.24 0.36 8.78 16 26 F -0.20 -5.47 16.20 44.97 0.73 -4.74 16 27 F -0.20 -5.40 16.20 44.97 0.73 -4.67 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.85 6.09 -2.39 -0.01 1.84 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.97 7.92 -2.39 -0.02 1.95 16 32 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.37 14.84 5.62 -92.71 -0.52 14.32 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.06 2.07 7.81 -2.39 -0.02 2.05 16 36 H 0.06 2.14 7.59 -2.39 -0.02 2.13 16 37 H 0.31 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -71.05 325.53 2.68 -68.37 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.54 Total: 19.78 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 6.14 Total: 24.87 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -7.25 Total: -125.67 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.11 Total: -22.49 kcal Atomic # 9 Polarization: -10.87 SS G_CDS: 1.46 Total: -9.41 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.90 Total: 44.55 kcal Total: -71.05 2.68 -68.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989450608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.769 kcal (2) G-P(sol) polarization free energy of solvation -71.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds