Wall clock time and date at job start Tue Mar 31 2020 10:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.91782 * 2 1 4 4 C 1.54912 * 110.99964 * 236.09241 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47339 * 180.02562 * 10 8 6 12 12 H 1.48493 * 109.47239 * 300.00542 * 10 8 6 13 13 H 1.48504 * 109.46636 * 60.00101 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.08999 * 110.67460 * 96.51874 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21690 * 119.99980 * 359.97438 * 18 17 15 20 20 C 1.46722 * 120.00053 * 180.02562 * 18 17 15 21 21 O 1.35341 * 126.64584 * 359.68344 * 20 18 17 22 22 C 1.33657 * 107.68863 * 179.87679 * 21 20 18 23 23 N 1.30614 * 109.15399 * 0.39678 * 22 21 20 24 24 C 1.33694 * 108.99383 * 359.75564 * 23 22 21 25 25 C 1.50704 * 126.27283 * 179.97438 * 24 23 22 26 26 F 1.39901 * 109.47335 * 30.02024 * 25 24 23 27 27 F 1.39898 * 109.47218 * 150.01972 * 25 24 23 28 28 H 1.09001 * 109.47544 * 182.45090 * 1 2 3 29 29 H 1.09005 * 109.46735 * 302.45232 * 1 2 3 30 30 H 1.09002 * 109.47189 * 62.44977 * 1 2 3 31 31 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 32 32 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 33 33 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 35 35 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 36 36 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 37 37 H 1.08001 * 125.42455 * 180.14801 * 22 21 20 38 38 H 1.09000 * 109.47072 * 270.01929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7733 6 6 4.4639 -1.5670 -1.6071 7 1 4.3332 -1.5121 -2.6778 8 6 5.6833 -1.9647 -1.0763 9 7 5.8427 -2.0311 0.2286 10 14 7.0975 -2.4070 -2.2137 11 1 8.2801 -2.7966 -1.4047 12 1 6.6971 -3.5425 -3.0829 13 1 7.4391 -1.2340 -3.0578 14 6 3.4656 -1.2795 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4449 -1.6614 1.4230 17 7 2.2287 0.0496 2.3814 18 6 2.2004 -0.4914 3.6155 19 8 2.0561 -1.6922 3.7503 20 6 2.3426 0.3674 4.7966 21 8 2.5139 1.7100 4.8032 22 6 2.5965 2.1025 6.0781 23 7 2.4919 1.0583 6.8557 24 6 2.3339 -0.0330 6.0998 25 6 2.1755 -1.4468 6.5971 26 9 1.5513 -1.4337 7.8490 27 9 1.3932 -2.1741 5.6936 28 1 -0.3634 -1.0267 0.0439 29 1 -0.3633 0.5515 0.8672 30 1 -0.3634 0.4753 -0.9111 31 1 2.1559 -0.1722 -2.0836 32 1 1.4524 -1.6705 -1.4042 33 1 6.6947 -2.3094 0.5996 34 1 3.6600 -2.2965 1.0368 35 1 4.2423 -0.6086 1.0631 36 1 2.3433 1.0068 2.2741 37 1 2.7325 3.1206 6.4121 38 1 3.1569 -1.9130 6.6852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080457590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:27 Heat of formation + Delta-G solvation = -75.027018 kcal Electronic energy + Delta-G solvation = -26889.716248 eV Core-core repulsion = 22599.084718 eV Total energy + Delta-G solvation = -4290.631530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.89477 -46.88051 -43.79052 -39.61792 -37.61364 -35.55647 -34.02573 -32.74064 -31.39020 -30.42578 -28.23762 -26.82027 -25.67992 -24.35624 -23.43931 -22.16352 -20.95025 -20.18713 -19.89634 -18.57980 -17.77592 -17.22983 -17.03709 -16.93901 -16.78868 -16.02236 -15.75705 -15.06108 -14.47224 -14.40459 -14.34566 -13.78037 -13.63375 -13.34732 -13.15848 -12.89503 -12.85454 -12.71451 -12.04304 -11.92444 -11.76940 -11.44587 -11.41118 -11.13092 -11.06653 -10.79825 -10.73120 -10.50707 -10.11415 -10.02358 -9.95486 -9.73106 -9.45301 -8.71124 -8.61402 -6.88712 -5.73769 -3.08881 0.47570 1.99560 2.11079 3.04149 3.19489 3.21066 3.38994 3.43377 3.44840 3.86143 4.14921 4.43335 4.49220 4.79836 4.90914 5.03611 5.10001 5.24322 5.25201 5.36763 5.50781 5.62450 5.67828 5.90510 5.92266 6.08042 6.10580 6.26141 6.40472 6.54923 6.57364 6.84701 7.05318 7.41395 7.51287 7.65995 7.78133 8.15660 8.21877 9.17178 9.77950 10.42219 11.37267 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.003821 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.419976 B = 7325.330521 C = 7940.320637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.921 5.921 10 Si 0.913 3.087 11 H -0.290 1.290 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.173 3.827 15 C 0.118 3.882 16 H 0.095 0.905 17 N -0.693 5.693 18 C 0.592 3.408 19 O -0.486 6.486 20 C -0.044 4.044 21 O -0.182 6.182 22 C 0.201 3.799 23 N -0.468 5.468 24 C -0.020 4.020 25 C 0.355 3.645 26 F -0.193 7.193 27 F -0.161 7.161 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.024 0.976 33 H 0.253 0.747 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.401 0.599 37 H 0.262 0.738 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 9.325 10.526 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.360 4.360 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.568 5.568 10 Si 0.743 3.257 11 H -0.216 1.216 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.047 3.953 15 C 0.014 3.986 16 H 0.113 0.887 17 N -0.342 5.342 18 C 0.374 3.626 19 O -0.361 6.361 20 C -0.101 4.101 21 O -0.067 6.067 22 C -0.025 4.025 23 N -0.196 5.196 24 C -0.145 4.145 25 C 0.301 3.699 26 F -0.174 7.174 27 F -0.142 7.142 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.235 0.765 37 H 0.278 0.722 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.838 8.402 11.231 16.578 hybrid contribution 0.876 0.530 -1.110 1.510 sum -7.962 8.931 10.121 15.671 Atomic orbital electron populations 1.21706 0.94874 1.01898 1.01090 1.22629 0.94965 0.99556 0.96180 0.90355 1.21588 0.87585 0.95108 0.94274 1.44389 1.07925 1.79265 1.01654 1.19014 0.89266 1.38773 0.88934 0.90288 1.24818 0.97878 1.01585 0.96019 1.69948 1.24350 1.53251 1.09267 0.86187 0.81768 0.78296 0.79429 1.21599 1.21086 1.21165 1.21489 0.89706 1.00474 0.83607 1.22690 1.00873 0.92755 0.82314 0.88685 1.45835 1.71824 1.11514 1.05062 1.16342 0.78793 0.86315 0.81109 1.91031 1.48600 1.12085 1.84377 1.23366 1.08655 0.80865 0.97232 1.84564 1.67414 1.22057 1.32647 1.28392 0.97637 1.00916 0.75579 1.70196 1.17581 0.97320 1.34492 1.22478 1.05513 0.96902 0.89599 1.19353 0.92617 0.84939 0.73037 1.93016 1.85222 1.96976 1.42187 1.93210 1.77102 1.77502 1.66415 0.92457 0.93173 0.92595 0.93839 0.95860 0.93636 0.93163 0.93043 0.76460 0.72234 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.29 37.16 0.35 -1.41 16 2 C -0.11 -1.80 3.27 -88.47 -0.29 -2.09 16 3 H 0.08 1.19 8.01 -51.93 -0.42 0.78 16 4 C 0.14 2.76 6.70 -2.53 -0.02 2.74 16 5 N -0.61 -15.10 3.39 -170.06 -0.58 -15.67 16 6 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.02 10.31 55.49 0.57 -26.44 16 10 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.17 4.14 5.13 -3.06 -0.02 4.12 16 15 C 0.12 2.15 2.78 -66.09 -0.18 1.96 16 16 H 0.10 1.82 7.41 -51.93 -0.39 1.44 16 17 N -0.69 -10.83 5.10 -53.31 -0.27 -11.10 16 18 C 0.59 9.78 7.74 -12.83 -0.10 9.68 16 19 O -0.49 -9.44 12.78 5.20 0.07 -9.38 16 20 C -0.04 -0.61 7.14 -36.84 -0.26 -0.87 16 21 O -0.18 -2.00 10.57 4.45 0.05 -1.95 16 22 C 0.20 1.73 13.21 52.24 0.69 2.42 16 23 N -0.47 -5.71 11.21 -10.89 -0.12 -5.83 16 24 C -0.02 -0.28 6.78 -82.46 -0.56 -0.84 16 25 C 0.36 4.80 5.63 36.01 0.20 5.00 16 26 F -0.19 -2.67 17.29 2.25 0.04 -2.63 16 27 F -0.16 -2.62 13.49 2.25 0.03 -2.59 16 28 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.05 1.40 7.52 -51.93 -0.39 1.01 16 35 H 0.05 1.36 7.25 -51.93 -0.38 0.98 16 36 H 0.40 5.28 8.36 -40.82 -0.34 4.94 16 37 H 0.26 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -33.89 329.92 -5.12 -39.00 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.41 Total: 0.81 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: -0.44 Total: 13.91 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.40 Total: -59.05 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.11 Total: -11.33 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.07 Total: -5.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.89 -5.12 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080457590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.024 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds