Wall clock time and date at job start Tue Mar 31 2020 10:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.91782 * 2 1 4 4 C 1.54912 * 110.99964 * 236.09241 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47339 * 180.02562 * 10 8 6 12 12 H 1.48493 * 109.47239 * 300.00542 * 10 8 6 13 13 H 1.48504 * 109.46636 * 60.00101 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.08999 * 110.67460 * 96.51874 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21690 * 119.99980 * 359.97438 * 18 17 15 20 20 C 1.46722 * 120.00053 * 180.02562 * 18 17 15 21 21 O 1.35341 * 126.64584 * 359.68344 * 20 18 17 22 22 C 1.33657 * 107.68863 * 179.87679 * 21 20 18 23 23 N 1.30614 * 109.15399 * 0.39678 * 22 21 20 24 24 C 1.33694 * 108.99383 * 359.75564 * 23 22 21 25 25 C 1.50704 * 126.27283 * 179.97438 * 24 23 22 26 26 F 1.39901 * 109.47335 * 30.02024 * 25 24 23 27 27 F 1.39898 * 109.47218 * 150.01972 * 25 24 23 28 28 H 1.09001 * 109.47544 * 182.45090 * 1 2 3 29 29 H 1.09005 * 109.46735 * 302.45232 * 1 2 3 30 30 H 1.09002 * 109.47189 * 62.44977 * 1 2 3 31 31 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 32 32 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 33 33 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 35 35 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 36 36 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 37 37 H 1.08001 * 125.42455 * 180.14801 * 22 21 20 38 38 H 1.09000 * 109.47072 * 270.01929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7733 6 6 4.4639 -1.5670 -1.6071 7 1 4.3332 -1.5121 -2.6778 8 6 5.6833 -1.9647 -1.0763 9 7 5.8427 -2.0311 0.2286 10 14 7.0975 -2.4070 -2.2137 11 1 8.2801 -2.7966 -1.4047 12 1 6.6971 -3.5425 -3.0829 13 1 7.4391 -1.2340 -3.0578 14 6 3.4656 -1.2795 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4449 -1.6614 1.4230 17 7 2.2287 0.0496 2.3814 18 6 2.2004 -0.4914 3.6155 19 8 2.0561 -1.6922 3.7503 20 6 2.3426 0.3674 4.7966 21 8 2.5139 1.7100 4.8032 22 6 2.5965 2.1025 6.0781 23 7 2.4919 1.0583 6.8557 24 6 2.3339 -0.0330 6.0998 25 6 2.1755 -1.4468 6.5971 26 9 1.5513 -1.4337 7.8490 27 9 1.3932 -2.1741 5.6936 28 1 -0.3634 -1.0267 0.0439 29 1 -0.3633 0.5515 0.8672 30 1 -0.3634 0.4753 -0.9111 31 1 2.1559 -0.1722 -2.0836 32 1 1.4524 -1.6705 -1.4042 33 1 6.6947 -2.3094 0.5996 34 1 3.6600 -2.2965 1.0368 35 1 4.2423 -0.6086 1.0631 36 1 2.3433 1.0068 2.2741 37 1 2.7325 3.1206 6.4121 38 1 3.1569 -1.9130 6.6852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080457590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:26 Heat of formation + Delta-G solvation = -101.720026 kcal Electronic energy + Delta-G solvation = -26890.873744 eV Core-core repulsion = 22599.084718 eV Total energy + Delta-G solvation = -4291.789026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.00979 -48.01522 -44.69550 -41.00063 -39.16435 -36.51314 -35.64213 -34.35085 -32.43634 -32.14988 -29.78827 -28.05873 -27.32238 -25.67158 -24.69774 -23.27872 -22.30834 -21.65999 -21.35290 -19.68067 -18.90337 -18.79909 -18.30054 -18.11725 -17.79936 -17.46899 -16.90561 -16.63512 -15.91458 -15.79302 -15.51478 -15.34296 -14.82260 -14.77538 -14.52595 -14.30109 -14.10766 -13.93749 -13.70729 -13.34776 -13.06372 -12.89487 -12.85477 -12.57718 -12.42740 -12.26271 -12.10163 -12.08686 -11.86166 -11.70165 -11.48742 -11.33223 -10.74069 -10.48637 -10.09009 -8.92838 -7.85366 -5.22634 -0.53188 1.12528 1.17187 1.45435 1.49050 1.55216 1.79445 1.99226 2.31128 2.49649 2.93669 3.15373 3.33504 3.41319 3.61959 3.74489 3.78019 4.01448 4.02965 4.04741 4.08529 4.26684 4.46689 4.60110 4.70046 4.88318 4.92781 5.02535 5.06837 5.08781 5.27125 5.44288 5.48881 5.56448 5.74124 6.12857 6.16552 6.37221 6.91507 7.07485 7.75368 8.38775 9.24040 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.003821 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.419976 B = 7325.330521 C = 7940.320637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 H 0.093 0.907 4 C 0.133 3.867 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.088 0.912 8 C -0.067 4.067 9 N -0.953 5.953 10 Si 0.979 3.021 11 H -0.298 1.298 12 H -0.278 1.278 13 H -0.272 1.272 14 C 0.187 3.813 15 C 0.135 3.865 16 H 0.084 0.916 17 N -0.684 5.684 18 C 0.592 3.408 19 O -0.524 6.524 20 C -0.068 4.068 21 O -0.178 6.178 22 C 0.241 3.759 23 N -0.500 5.500 24 C -0.018 4.018 25 C 0.347 3.653 26 F -0.195 7.195 27 F -0.180 7.180 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.245 0.755 34 H -0.004 1.004 35 H 0.020 0.980 36 H 0.415 0.585 37 H 0.322 0.678 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.871 11.988 10.357 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.111 0.889 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.106 0.894 8 C -0.260 4.260 9 N -0.602 5.602 10 Si 0.807 3.193 11 H -0.224 1.224 12 H -0.204 1.204 13 H -0.198 1.198 14 C 0.061 3.939 15 C 0.030 3.970 16 H 0.102 0.898 17 N -0.335 5.335 18 C 0.376 3.624 19 O -0.402 6.402 20 C -0.126 4.126 21 O -0.064 6.064 22 C 0.016 3.984 23 N -0.228 5.228 24 C -0.142 4.142 25 C 0.293 3.707 26 F -0.177 7.177 27 F -0.161 7.161 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.014 0.986 35 H 0.038 0.962 36 H 0.252 0.748 37 H 0.336 0.664 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.789 11.105 11.047 18.471 hybrid contribution 1.151 -0.218 -0.991 1.535 sum -8.638 10.887 10.056 17.154 Atomic orbital electron populations 1.21662 0.91686 1.02294 1.03097 1.22552 0.97306 0.98986 0.92494 0.88894 1.21853 0.85202 0.95861 0.96329 1.44706 1.09523 1.79262 1.01936 1.19483 0.90110 1.37752 0.89859 0.89377 1.25683 1.00588 1.02295 0.97389 1.70206 1.24276 1.54659 1.11087 0.85141 0.78238 0.78375 0.77529 1.22399 1.20366 1.19803 1.21121 0.92325 0.96837 0.83628 1.22236 0.97091 0.93601 0.84112 0.89770 1.45623 1.71745 1.11872 1.04223 1.16607 0.77729 0.86260 0.81814 1.91008 1.50133 1.13892 1.85147 1.22637 1.11859 0.82056 0.96021 1.84573 1.67567 1.20341 1.33877 1.29825 0.92393 1.02124 0.74067 1.70256 1.19800 0.97621 1.35075 1.22522 1.04573 0.97331 0.89791 1.19684 0.93154 0.85404 0.72501 1.93001 1.85397 1.97020 1.42246 1.93168 1.77699 1.78071 1.67175 0.92923 0.91422 0.90314 0.92550 0.95495 0.94593 0.98614 0.96219 0.74785 0.66352 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.29 71.98 0.67 -2.23 16 2 C -0.09 -2.82 3.27 -9.40 -0.03 -2.85 16 3 H 0.09 2.57 8.01 -2.39 -0.02 2.55 16 4 C 0.13 5.07 6.70 86.86 0.58 5.65 16 5 N -0.63 -31.93 3.39 -691.96 -2.35 -34.28 16 6 C -0.24 -13.55 10.28 84.03 0.86 -12.69 16 7 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 8 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 9 N -0.95 -58.51 10.31 21.65 0.22 -58.29 16 10 Si 0.98 45.86 29.55 68.60 2.03 47.88 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 C 0.19 9.40 5.13 86.73 0.45 9.85 16 15 C 0.14 4.98 2.78 46.18 0.13 5.11 16 16 H 0.08 3.32 7.41 -2.39 -0.02 3.31 16 17 N -0.68 -21.33 5.10 -440.81 -2.25 -23.58 16 18 C 0.59 19.88 7.74 86.46 0.67 20.54 16 19 O -0.52 -21.33 12.78 -4.32 -0.06 -21.39 16 20 C -0.07 -1.86 7.14 24.05 0.17 -1.69 16 21 O -0.18 -3.45 10.57 -6.99 -0.07 -3.52 16 22 C 0.24 3.22 13.21 130.42 1.72 4.94 16 23 N -0.50 -11.04 11.21 -303.14 -3.40 -14.44 16 24 C -0.02 -0.48 6.78 41.83 0.28 -0.20 16 25 C 0.35 9.46 5.63 71.24 0.40 9.86 16 26 F -0.20 -5.38 17.29 44.97 0.78 -4.61 16 27 F -0.18 -6.07 13.49 44.97 0.61 -5.47 16 28 H 0.05 1.25 8.11 -2.39 -0.02 1.23 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.03 1.03 8.04 -2.39 -0.02 1.01 16 33 H 0.24 14.75 8.31 -92.70 -0.77 13.98 16 34 H 0.00 -0.26 7.52 -2.38 -0.02 -0.28 16 35 H 0.02 1.09 7.25 -2.39 -0.02 1.08 16 36 H 0.42 10.40 8.36 -92.71 -0.77 9.63 16 37 H 0.32 -0.31 8.06 -2.91 -0.02 -0.33 16 38 H 0.15 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -78.82 329.92 2.22 -76.60 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.34 Total: 8.13 kcal Atomic # 6 Polarization: 26.58 SS G_CDS: 6.37 Total: 32.95 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -7.77 Total: -130.58 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.13 Total: -24.91 kcal Atomic # 9 Polarization: -11.46 SS G_CDS: 1.38 Total: -10.07 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.82 2.22 -76.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080457590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.121 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds