Wall clock time and date at job start Tue Mar 31 2020 11:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99768 * 2 1 4 4 H 1.07997 * 120.00259 * 199.61120 * 3 2 1 5 5 C 1.38817 * 119.99805 * 19.61544 * 3 2 1 6 6 N 1.31614 * 120.00056 * 15.40887 * 5 3 2 7 7 Si 1.86803 * 119.99625 * 195.40946 * 5 3 2 8 8 H 1.48501 * 109.47055 * 94.96193 * 7 5 3 9 9 H 1.48496 * 109.47098 * 214.96054 * 7 5 3 10 10 H 1.48500 * 109.47175 * 334.96124 * 7 5 3 11 11 C 1.46501 * 120.00189 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.47217 * 270.00129 * 11 2 1 13 13 C 1.35122 * 126.38652 * 268.62142 * 12 11 2 14 14 C 1.48332 * 126.05403 * 0.02562 * 13 12 11 15 15 C 1.39380 * 120.12108 * 317.03508 * 14 13 12 16 16 C 1.38012 * 119.87237 * 179.97438 * 15 14 13 17 17 C 1.38336 * 120.12449 * 0.02562 * 16 15 14 18 18 C 1.38332 * 120.24973 * 0.26951 * 17 16 15 19 19 C 1.38008 * 120.12417 * 359.45392 * 18 17 16 20 20 N 1.35332 * 107.89424 * 180.25989 * 13 12 11 21 21 C 1.31854 * 108.92029 * 359.56693 * 20 13 12 22 22 N 1.34982 * 109.55526 * 0.43498 * 21 20 13 23 23 C 1.46023 * 117.13918 * 179.73132 * 22 21 20 24 24 C 1.52830 * 112.48381 * 0.02562 * 23 22 21 25 25 S 1.76958 * 140.41657 * 180.02562 * 21 20 13 26 26 H 1.08996 * 109.47114 * 275.17441 * 1 2 3 27 27 H 1.08997 * 109.47118 * 35.18094 * 1 2 3 28 28 H 1.09004 * 109.46945 * 155.18172 * 1 2 3 29 29 H 0.97007 * 119.99842 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.46974 * 150.00040 * 11 2 1 31 31 H 1.09005 * 109.46665 * 30.00126 * 11 2 1 32 32 H 1.07996 * 120.06424 * 0.02562 * 15 14 13 33 33 H 1.07997 * 119.93761 * 180.02562 * 16 15 14 34 34 H 1.08002 * 119.87363 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.93212 * 179.70250 * 18 17 16 36 36 H 1.07996 * 120.06105 * 180.29797 * 19 18 17 37 37 H 1.08998 * 108.88845 * 120.79261 * 23 22 21 38 38 H 1.08992 * 108.88855 * 239.21048 * 23 22 21 39 39 H 1.08997 * 110.48250 * 118.68815 * 24 23 22 40 40 H 1.09003 * 110.48118 * 241.30806 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1826 1.2132 -0.3139 5 6 1.5159 2.3532 0.4036 6 7 0.3795 2.2903 1.0646 7 14 2.2760 4.0132 0.0084 8 1 1.6825 4.5435 -1.2453 9 1 2.0072 4.9584 1.1217 10 1 3.7425 3.8574 -0.1654 11 6 2.1976 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4200 13 6 3.5364 -1.4138 2.1672 14 6 4.7020 -0.6048 1.7345 15 6 5.2481 -0.7880 0.4653 16 6 6.3323 -0.0321 0.0678 17 6 6.8772 0.9056 0.9266 18 6 6.3430 1.0873 2.1896 19 6 5.2554 0.3411 2.5956 20 7 3.3765 -1.9958 3.3784 21 6 2.2190 -2.6270 3.4000 22 7 1.6029 -2.4817 2.2078 23 6 0.3018 -3.1249 2.0476 24 6 -0.1399 -3.8715 3.3059 25 16 1.2200 -3.6071 4.4829 26 1 -0.3633 0.0927 1.0234 27 1 -0.3633 0.8399 -0.5921 28 1 -0.3633 -0.9328 -0.4314 29 1 -0.0635 3.1060 1.3463 30 1 3.1500 -1.1381 -0.5143 31 1 1.6084 -2.0281 -0.5148 32 1 4.8233 -1.5194 -0.2061 33 1 6.7561 -0.1729 -0.9155 34 1 7.7259 1.4946 0.6115 35 1 6.7755 1.8175 2.8577 36 1 4.8362 0.4873 3.5801 37 1 -0.4413 -2.3637 1.8102 38 1 0.3568 -3.8309 1.2191 39 1 -1.0677 -3.4505 3.6932 40 1 -0.2608 -4.9343 3.0962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141309040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:15 Heat of formation + Delta-G solvation = 127.607605 kcal Electronic energy + Delta-G solvation = -24403.668435 eV Core-core repulsion = 21118.806202 eV Total energy + Delta-G solvation = -3284.862233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.52431 -38.40110 -35.71681 -35.27156 -31.97754 -31.17772 -30.43783 -29.92632 -28.31876 -26.14069 -25.45578 -24.21922 -22.76798 -22.10958 -21.34628 -20.03487 -19.34946 -17.19481 -16.83407 -16.35169 -16.33759 -15.21994 -15.03763 -14.75309 -14.42647 -13.89415 -13.72328 -13.61084 -13.42198 -13.23348 -12.95756 -12.87314 -12.62608 -12.30166 -12.07814 -11.71336 -11.41587 -10.96770 -10.83300 -10.75601 -10.66506 -10.60898 -10.46846 -10.06251 -9.95834 -9.58165 -9.28219 -9.00063 -8.61683 -8.37604 -8.07023 -7.07244 -6.87531 -5.80281 -3.21618 1.17099 1.73372 1.96545 1.99801 2.35227 2.92274 3.37006 3.44419 3.46247 3.49782 4.09246 4.41527 4.47576 4.50328 4.98287 5.14858 5.18759 5.33654 5.35283 5.41649 5.42614 5.49015 5.56673 5.61608 5.70931 5.95543 6.04819 6.14183 6.30458 6.44540 6.50089 6.55932 6.78084 6.80591 6.99489 7.10023 7.19661 7.20197 7.35090 7.52705 7.53624 7.79342 8.26706 8.32706 9.13684 9.74914 10.20903 11.25444 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011223 B = 0.006435 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.258784 B = 4350.169096 C = 5891.985332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.582 5.582 3 C -0.246 4.246 4 H 0.077 0.923 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.901 3.099 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.274 1.274 11 C 0.203 3.797 12 C 0.046 3.954 13 C 0.041 3.959 14 C 0.034 3.966 15 C -0.107 4.107 16 C -0.119 4.119 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.091 4.091 20 N -0.443 5.443 21 C 0.171 3.829 22 N -0.476 5.476 23 C 0.099 3.901 24 C -0.114 4.114 25 S -0.023 6.023 26 H 0.026 0.974 27 H 0.050 0.950 28 H -0.005 1.005 29 H 0.252 0.748 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 -11.551 0.251 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.302 5.302 3 C -0.376 4.376 4 H 0.094 0.906 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.731 3.269 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.199 1.199 11 C 0.074 3.926 12 C -0.072 4.072 13 C -0.088 4.088 14 C 0.033 3.967 15 C -0.126 4.126 16 C -0.138 4.138 17 C -0.148 4.148 18 C -0.139 4.139 19 C -0.109 4.109 20 N -0.165 5.165 21 C -0.199 4.199 22 N -0.166 5.166 23 C -0.025 4.025 24 C -0.263 4.263 25 S 0.206 5.794 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.013 0.987 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.369 -11.772 1.977 12.170 hybrid contribution -0.655 1.551 -1.641 2.351 sum 1.714 -10.221 0.337 10.369 Atomic orbital electron populations 1.20863 0.82390 0.95620 0.99373 1.44275 1.01875 1.00287 1.83784 1.19286 0.96948 0.83923 1.37413 0.90562 1.24968 0.97729 0.98491 0.98146 1.70084 1.18560 1.26792 1.39562 0.86252 0.79196 0.83975 0.77464 1.21512 1.21800 1.19907 1.19810 0.97907 0.88499 0.86374 1.23388 0.89413 0.95603 0.98835 1.18628 0.95828 1.04173 0.90135 1.17573 0.91668 0.94060 0.93443 1.21069 0.96131 1.00125 0.95239 1.20893 0.96791 0.96815 0.99252 1.21028 1.00448 0.98902 0.94385 1.20970 0.96850 0.99612 0.96490 1.21093 0.95451 0.94821 0.99569 1.70656 1.13256 1.11770 1.20806 1.25124 0.96305 1.08544 0.89973 1.46596 1.16070 1.41238 1.12723 1.21427 0.84382 0.98459 0.98239 1.24291 1.01228 1.05172 0.95646 1.85764 1.15154 1.62097 1.16415 0.95529 0.93083 0.98652 0.93765 0.90042 0.93617 0.86189 0.86416 0.86767 0.86557 0.86306 0.88115 0.88716 0.86265 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 9.02 59.85 0.54 4.33 16 2 N -0.58 -14.03 2.91 -182.50 -0.53 -14.56 16 3 C -0.25 -6.58 9.68 -15.06 -0.15 -6.73 16 4 H 0.08 2.04 7.86 -52.49 -0.41 1.63 16 5 C 0.01 0.14 5.06 -17.43 -0.09 0.06 16 6 N -0.91 -26.21 10.65 55.49 0.59 -25.61 16 7 Si 0.90 22.13 29.58 -169.99 -5.03 17.10 16 8 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.20 4.09 6.00 -5.19 -0.03 4.05 16 12 C 0.05 0.95 6.79 -80.31 -0.55 0.40 16 13 C 0.04 0.89 6.54 -83.28 -0.54 0.35 16 14 C 0.03 0.69 5.70 -104.89 -0.60 0.10 16 15 C -0.11 -1.91 8.51 -39.24 -0.33 -2.24 16 16 C -0.12 -1.90 10.03 -39.63 -0.40 -2.30 16 17 C -0.13 -2.04 10.04 -39.51 -0.40 -2.43 16 18 C -0.12 -2.07 10.03 -39.63 -0.40 -2.47 16 19 C -0.09 -1.80 9.78 -39.24 -0.38 -2.18 16 20 N -0.44 -9.77 11.38 -9.97 -0.11 -9.88 16 21 C 0.17 3.33 8.89 -89.29 -0.79 2.54 16 22 N -0.48 -8.75 3.37 -112.11 -0.38 -9.12 16 23 C 0.10 1.29 7.43 -4.39 -0.03 1.26 16 24 C -0.11 -1.14 7.36 37.07 0.27 -0.86 16 25 S -0.02 -0.32 23.24 -107.50 -2.50 -2.82 16 26 H 0.03 0.69 7.41 -51.93 -0.38 0.30 16 27 H 0.05 1.29 7.18 -51.93 -0.37 0.92 16 28 H -0.01 -0.10 7.83 -51.93 -0.41 -0.51 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.08 1.57 4.90 -51.93 -0.25 1.32 16 31 H 0.05 0.80 7.86 -51.93 -0.41 0.40 16 32 H 0.12 1.95 6.36 -52.49 -0.33 1.61 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 37 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -33.47 345.85 -11.71 -45.18 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.09 Total: 0.64 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.88 Total: -6.13 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.43 Total: -59.18 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.50 Total: -2.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.47 -11.71 -45.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141309040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.793 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds