Wall clock time and date at job start Tue Mar 31 2020 10:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47212 * 179.97438 * 4 3 2 6 6 C 1.36905 * 119.99449 * 92.72211 * 5 4 3 7 7 H 1.07998 * 120.00486 * 218.41528 * 6 5 4 8 8 C 1.39026 * 120.00250 * 38.69751 * 6 5 4 9 9 N 1.31379 * 120.00271 * 210.18082 * 8 6 5 10 10 Si 1.86805 * 119.99747 * 30.18091 * 8 6 5 11 11 H 1.48495 * 109.47220 * 90.48393 * 10 8 6 12 12 H 1.48497 * 109.46978 * 210.48690 * 10 8 6 13 13 H 1.48499 * 109.47086 * 330.48468 * 10 8 6 14 14 C 1.34775 * 120.00310 * 272.72578 * 5 4 3 15 15 O 1.21616 * 120.00083 * 6.12213 * 14 5 4 16 16 C 1.47463 * 119.99730 * 186.11941 * 14 5 4 17 17 C 1.39817 * 120.14267 * 37.32799 * 16 14 5 18 18 C 1.37902 * 119.87358 * 179.69700 * 17 16 14 19 19 F 1.35096 * 119.92609 * 180.29718 * 18 17 16 20 20 C 1.38955 * 120.14739 * 0.59960 * 18 17 16 21 21 F 1.35099 * 119.85923 * 179.69678 * 20 18 17 22 22 C 1.38462 * 120.28136 * 359.67622 * 20 18 17 23 23 C 1.50703 * 119.93803 * 180.02562 * 22 20 18 24 24 C 1.38187 * 120.12742 * 0.02562 * 22 20 18 25 25 F 1.35102 * 120.07920 * 180.02562 * 24 22 20 26 26 H 1.09004 * 109.47489 * 59.99151 * 1 2 3 27 27 H 1.08991 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46591 * 299.99702 * 1 2 3 29 29 H 1.08996 * 109.46816 * 240.00513 * 2 1 3 30 30 H 1.08996 * 109.47599 * 120.00218 * 2 1 3 31 31 H 1.09004 * 109.47162 * 60.00647 * 3 2 1 32 32 H 1.08996 * 109.47079 * 300.00536 * 3 2 1 33 33 H 1.09001 * 109.47262 * 60.00592 * 4 3 2 34 34 H 1.08996 * 109.47599 * 300.00218 * 4 3 2 35 35 H 0.96997 * 119.99891 * 359.97438 * 9 8 6 36 36 H 1.08004 * 120.05695 * 359.97438 * 17 16 14 37 37 H 1.08996 * 109.47230 * 269.97742 * 23 22 20 38 38 H 1.08999 * 109.47034 * 29.98077 * 23 22 20 39 39 H 1.09003 * 109.47457 * 149.97790 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3391 3.4510 1.1841 7 1 4.0979 4.4958 1.3123 8 6 4.9401 2.7444 2.2197 9 7 4.6957 3.0733 3.4679 10 14 6.0951 1.3272 1.8362 11 1 7.4850 1.8378 1.7240 12 1 6.0237 0.3215 2.9265 13 1 5.6947 0.6956 0.5532 14 6 4.2312 3.4770 -1.1661 15 8 3.8778 2.9621 -2.2097 16 6 4.8487 4.8160 -1.1766 17 6 5.8950 5.1136 -0.2982 18 6 6.4726 6.3656 -0.3171 19 9 7.4877 6.6524 0.5270 20 6 6.0088 7.3350 -1.1980 21 9 6.5749 8.5616 -1.2073 22 6 4.9691 7.0490 -2.0667 23 6 4.4725 8.1059 -3.0192 24 6 4.3860 5.7962 -2.0618 25 9 3.3720 5.5180 -2.9101 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 4.0963 3.8095 3.6670 36 1 6.2531 4.3627 0.3906 37 1 3.6759 8.6781 -2.5438 38 1 5.2933 8.7737 -3.2809 39 1 4.0892 7.6303 -3.9220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148731057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:09 Heat of formation + Delta-G solvation = -151.975060 kcal Electronic energy + Delta-G solvation = -27116.688530 eV Core-core repulsion = 22802.800321 eV Total energy + Delta-G solvation = -4313.888210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.31672 -48.64838 -48.35457 -39.53258 -37.85452 -35.61014 -34.26398 -32.71129 -32.09223 -30.05338 -28.53161 -27.04041 -24.85388 -24.09243 -22.51016 -22.07589 -20.77366 -19.44563 -18.20088 -17.89255 -17.77371 -16.69259 -16.37322 -16.04135 -15.48665 -15.21340 -14.98000 -14.78285 -14.73563 -14.59932 -14.29908 -13.91787 -13.50012 -13.43049 -13.18070 -13.09889 -12.89062 -12.61614 -12.48452 -12.33029 -12.07322 -11.83916 -11.39353 -11.20405 -11.16396 -10.89907 -10.71123 -10.68996 -10.18312 -9.98721 -9.72710 -9.29051 -8.88216 -8.67246 -8.34478 -8.06699 -7.08207 -4.29980 0.79350 1.08036 3.00045 3.12189 3.20059 3.30425 3.77032 3.82830 4.02738 4.09472 4.20427 4.58171 4.64620 4.72214 5.01380 5.16899 5.32907 5.34676 5.44289 5.50017 5.51379 5.74049 5.80373 5.86894 6.02618 6.08848 6.09301 6.11497 6.16736 6.20381 6.23334 6.36537 6.41605 6.47268 6.75498 6.87375 6.90378 7.40839 7.65569 8.12322 8.75292 9.01157 9.50695 10.24785 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.005628 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.158157 B = 4973.744127 C = 6511.762096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.128 4.128 4 C 0.114 3.886 5 N -0.437 5.437 6 C -0.442 4.442 7 H 0.090 0.910 8 C 0.038 3.962 9 N -0.839 5.839 10 Si 1.022 2.978 11 H -0.278 1.278 12 H -0.275 1.275 13 H -0.265 1.265 14 C 0.502 3.498 15 O -0.583 6.583 16 C -0.100 4.100 17 C -0.043 4.043 18 C 0.045 3.955 19 F -0.127 7.127 20 C 0.095 3.905 21 F -0.125 7.125 22 C -0.148 4.148 23 C -0.108 4.108 24 C 0.150 3.850 25 F -0.113 7.113 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.282 0.718 36 H 0.177 0.823 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 2.998 -6.206 6.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.167 4.167 4 C -0.008 4.008 5 N -0.154 5.154 6 C -0.569 4.569 7 H 0.107 0.893 8 C -0.176 4.176 9 N -0.468 5.468 10 Si 0.847 3.153 11 H -0.204 1.204 12 H -0.200 1.200 13 H -0.190 1.190 14 C 0.291 3.709 15 O -0.468 6.468 16 C -0.105 4.105 17 C -0.063 4.063 18 C 0.025 3.975 19 F -0.105 7.105 20 C 0.074 3.926 21 F -0.103 7.103 22 C -0.150 4.150 23 C -0.164 4.164 24 C 0.129 3.871 25 F -0.091 7.091 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.194 0.806 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.271 1.621 -5.934 6.157 hybrid contribution -0.845 1.610 -0.297 1.842 sum -0.573 3.232 -6.231 7.042 Atomic orbital electron populations 1.21741 0.96247 1.00897 1.01692 1.21466 0.95542 0.97326 1.01670 1.21874 0.96216 0.96118 1.02454 1.21771 0.93644 0.84156 1.01263 1.43609 1.54791 1.11946 1.05080 1.20390 1.46465 0.99037 0.90967 0.89282 1.26393 0.97105 1.02088 0.92015 1.70791 1.32024 1.25109 1.18876 0.84464 0.77060 0.76688 0.77104 1.20410 1.20046 1.18986 1.17836 0.83224 0.85549 0.84287 1.90700 1.55267 1.68863 1.31999 1.20007 0.98306 0.95704 0.96443 1.21594 0.93303 0.94975 0.96380 1.17506 0.91481 0.94578 0.93940 1.91523 1.56550 1.93821 1.68617 1.17172 0.95959 0.80826 0.98651 1.91490 1.83550 1.39727 1.95557 1.19479 0.98320 0.95926 1.01292 1.20621 1.01892 0.96280 0.97613 1.17139 0.87635 0.91751 0.90611 1.91539 1.56083 1.93848 1.67675 0.92952 0.93223 0.92880 0.92209 0.92145 0.91597 0.91918 0.91380 0.91147 0.90682 0.80619 0.90385 0.90614 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.13 -2.39 5.53 -26.73 -0.15 -2.54 16 4 C 0.11 2.37 3.50 -4.04 -0.01 2.36 16 5 N -0.44 -9.89 2.12 -116.02 -0.25 -10.14 16 6 C -0.44 -10.39 6.44 -14.99 -0.10 -10.49 16 7 H 0.09 2.23 7.16 -52.49 -0.38 1.85 16 8 C 0.04 0.91 5.07 -17.45 -0.09 0.82 16 9 N -0.84 -21.32 13.69 55.50 0.76 -20.56 16 10 Si 1.02 21.35 26.75 -169.99 -4.55 16.80 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.26 -5.24 5.51 56.52 0.31 -4.93 16 14 C 0.50 11.50 7.16 -12.50 -0.09 11.41 16 15 O -0.58 -14.43 15.86 5.26 0.08 -14.35 16 16 C -0.10 -2.04 5.26 -104.91 -0.55 -2.60 16 17 C -0.04 -0.83 7.98 -39.11 -0.31 -1.14 16 18 C 0.05 0.80 7.29 -39.44 -0.29 0.51 16 19 F -0.13 -2.26 17.17 2.25 0.04 -2.22 16 20 C 0.09 1.54 7.25 -39.23 -0.28 1.26 16 21 F -0.12 -1.92 16.36 2.25 0.04 -1.88 16 22 C -0.15 -2.34 5.88 -104.56 -0.62 -2.95 16 23 C -0.11 -1.31 9.65 36.01 0.35 -0.96 16 24 C 0.15 2.77 7.18 -38.96 -0.28 2.49 16 25 F -0.11 -2.18 15.37 2.25 0.03 -2.15 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.41 7.60 -51.93 -0.39 1.01 16 34 H 0.07 1.44 4.34 -51.93 -0.23 1.21 16 35 H 0.28 7.12 8.73 -40.82 -0.36 6.77 16 36 H 0.18 3.55 6.36 -52.48 -0.33 3.22 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.81 7.63 -51.93 -0.40 0.42 16 39 H 0.08 0.90 7.63 -51.93 -0.40 0.50 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -26.01 335.68 -5.74 -31.74 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.75 Total: 3.12 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.21 Total: -5.42 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.51 Total: -30.70 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.35 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.25 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.55 Total: 16.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.01 -5.74 -31.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148731057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.231 kcal (2) G-P(sol) polarization free energy of solvation -26.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds