Wall clock time and date at job start Tue Mar 31 2020 10:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47212 * 179.97438 * 4 3 2 6 6 C 1.36905 * 119.99449 * 92.72211 * 5 4 3 7 7 H 1.07998 * 120.00486 * 218.41528 * 6 5 4 8 8 C 1.39026 * 120.00250 * 38.69751 * 6 5 4 9 9 N 1.31379 * 120.00271 * 210.18082 * 8 6 5 10 10 Si 1.86805 * 119.99747 * 30.18091 * 8 6 5 11 11 H 1.48495 * 109.47220 * 90.48393 * 10 8 6 12 12 H 1.48497 * 109.46978 * 210.48690 * 10 8 6 13 13 H 1.48499 * 109.47086 * 330.48468 * 10 8 6 14 14 C 1.34775 * 120.00310 * 272.72578 * 5 4 3 15 15 O 1.21616 * 120.00083 * 6.12213 * 14 5 4 16 16 C 1.47463 * 119.99730 * 186.11941 * 14 5 4 17 17 C 1.39817 * 120.14267 * 37.32799 * 16 14 5 18 18 C 1.37902 * 119.87358 * 179.69700 * 17 16 14 19 19 F 1.35096 * 119.92609 * 180.29718 * 18 17 16 20 20 C 1.38955 * 120.14739 * 0.59960 * 18 17 16 21 21 F 1.35099 * 119.85923 * 179.69678 * 20 18 17 22 22 C 1.38462 * 120.28136 * 359.67622 * 20 18 17 23 23 C 1.50703 * 119.93803 * 180.02562 * 22 20 18 24 24 C 1.38187 * 120.12742 * 0.02562 * 22 20 18 25 25 F 1.35102 * 120.07920 * 180.02562 * 24 22 20 26 26 H 1.09004 * 109.47489 * 59.99151 * 1 2 3 27 27 H 1.08991 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46591 * 299.99702 * 1 2 3 29 29 H 1.08996 * 109.46816 * 240.00513 * 2 1 3 30 30 H 1.08996 * 109.47599 * 120.00218 * 2 1 3 31 31 H 1.09004 * 109.47162 * 60.00647 * 3 2 1 32 32 H 1.08996 * 109.47079 * 300.00536 * 3 2 1 33 33 H 1.09001 * 109.47262 * 60.00592 * 4 3 2 34 34 H 1.08996 * 109.47599 * 300.00218 * 4 3 2 35 35 H 0.96997 * 119.99891 * 359.97438 * 9 8 6 36 36 H 1.08004 * 120.05695 * 359.97438 * 17 16 14 37 37 H 1.08996 * 109.47230 * 269.97742 * 23 22 20 38 38 H 1.08999 * 109.47034 * 29.98077 * 23 22 20 39 39 H 1.09003 * 109.47457 * 149.97790 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3391 3.4510 1.1841 7 1 4.0979 4.4958 1.3123 8 6 4.9401 2.7444 2.2197 9 7 4.6957 3.0733 3.4679 10 14 6.0951 1.3272 1.8362 11 1 7.4850 1.8378 1.7240 12 1 6.0237 0.3215 2.9265 13 1 5.6947 0.6956 0.5532 14 6 4.2312 3.4770 -1.1661 15 8 3.8778 2.9621 -2.2097 16 6 4.8487 4.8160 -1.1766 17 6 5.8950 5.1136 -0.2982 18 6 6.4726 6.3656 -0.3171 19 9 7.4877 6.6524 0.5270 20 6 6.0088 7.3350 -1.1980 21 9 6.5749 8.5616 -1.2073 22 6 4.9691 7.0490 -2.0667 23 6 4.4725 8.1059 -3.0192 24 6 4.3860 5.7962 -2.0618 25 9 3.3720 5.5180 -2.9101 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 4.0963 3.8095 3.6670 36 1 6.2531 4.3627 0.3906 37 1 3.6759 8.6781 -2.5438 38 1 5.2933 8.7737 -3.2809 39 1 4.0892 7.6303 -3.9220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148731057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:08 Heat of formation + Delta-G solvation = -163.527148 kcal Electronic energy + Delta-G solvation = -27117.189467 eV Core-core repulsion = 22802.800321 eV Total energy + Delta-G solvation = -4314.389146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.68955 -50.15047 -49.75177 -41.22238 -39.37900 -37.33325 -35.77432 -34.11354 -33.82721 -31.52139 -29.97097 -28.28197 -26.67112 -25.59275 -23.99628 -23.46965 -22.13457 -21.19476 -19.86162 -19.36423 -19.22290 -18.28411 -17.81966 -17.60882 -17.12575 -16.69820 -16.53238 -16.29752 -16.15549 -16.10236 -15.72623 -15.53205 -15.05301 -14.82325 -14.50594 -14.48300 -14.28221 -14.18750 -13.89671 -13.64436 -13.52249 -13.04546 -12.90879 -12.64503 -12.58309 -12.42254 -12.13707 -12.02427 -11.81763 -11.57019 -11.36493 -11.05925 -10.68854 -10.07422 -9.95482 -9.78230 -8.99208 -6.20912 -0.68268 -0.34118 1.34157 1.44047 1.56200 1.65149 2.15955 2.27963 2.34627 2.44845 2.77383 2.89694 3.16499 3.31697 3.55819 3.74125 3.96648 4.04342 4.11725 4.24319 4.33825 4.44192 4.55524 4.59295 4.61380 4.62778 4.76589 4.78925 4.85923 4.90233 4.93953 5.03910 5.05884 5.23205 5.34588 5.43126 5.47112 5.59048 5.73801 6.21151 6.89745 7.17619 7.67510 8.33485 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.005628 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.158157 B = 4973.744127 C = 6511.762096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.119 4.119 4 C 0.107 3.893 5 N -0.444 5.444 6 C -0.431 4.431 7 H 0.067 0.933 8 C 0.012 3.988 9 N -0.866 5.866 10 Si 1.049 2.951 11 H -0.270 1.270 12 H -0.272 1.272 13 H -0.250 1.250 14 C 0.498 3.502 15 O -0.606 6.606 16 C -0.125 4.125 17 C -0.048 4.048 18 C 0.046 3.954 19 F -0.127 7.127 20 C 0.110 3.890 21 F -0.112 7.112 22 C -0.128 4.128 23 C -0.109 4.109 24 C 0.144 3.856 25 F -0.119 7.119 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.273 0.727 36 H 0.162 0.838 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 3.441 -7.297 8.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.157 4.157 4 C -0.015 4.015 5 N -0.162 5.162 6 C -0.558 4.558 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.496 5.496 10 Si 0.870 3.130 11 H -0.196 1.196 12 H -0.197 1.197 13 H -0.174 1.174 14 C 0.288 3.712 15 O -0.493 6.493 16 C -0.129 4.129 17 C -0.067 4.067 18 C 0.026 3.974 19 F -0.106 7.106 20 C 0.089 3.911 21 F -0.091 7.091 22 C -0.131 4.131 23 C -0.165 4.165 24 C 0.123 3.877 25 F -0.097 7.097 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.179 0.821 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.402 2.075 -7.026 7.337 hybrid contribution -0.880 1.613 -0.032 1.837 sum -0.477 3.688 -7.058 7.978 Atomic orbital electron populations 1.21720 0.94565 1.02439 1.01553 1.21466 0.97024 0.94658 1.02507 1.21778 0.94758 0.98441 1.00759 1.21929 0.95038 0.83218 1.01316 1.43732 1.55057 1.12667 1.04748 1.20110 1.46301 0.98218 0.91154 0.91480 1.27191 0.97469 1.03541 0.91491 1.70880 1.33241 1.25823 1.19684 0.84118 0.76164 0.75066 0.77682 1.19578 1.19679 1.17442 1.18223 0.82635 0.86429 0.83915 1.90663 1.56236 1.69770 1.32623 1.19899 0.99399 0.95337 0.98274 1.21321 0.93619 0.95500 0.96308 1.17480 0.91391 0.94379 0.94163 1.91523 1.56560 1.93743 1.68749 1.17073 0.95481 0.80757 0.97803 1.91530 1.83301 1.38851 1.95389 1.19760 0.96891 0.95536 1.00864 1.20814 1.03172 0.95528 0.97015 1.17248 0.87801 0.92436 0.90249 1.91522 1.56397 1.94011 1.67780 0.93084 0.90826 0.93093 0.91315 0.91334 0.93172 0.93577 0.91337 0.90828 0.91695 0.82098 0.88564 0.88534 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.91 71.98 0.71 -2.87 16 2 C -0.12 -3.44 5.93 30.59 0.18 -3.26 16 3 C -0.12 -4.47 5.53 30.59 0.17 -4.30 16 4 C 0.11 4.46 3.50 86.38 0.30 4.76 16 5 N -0.44 -20.49 2.12 -639.22 -1.36 -21.84 16 6 C -0.43 -20.78 6.44 84.09 0.54 -20.24 16 7 H 0.07 3.50 7.16 -2.91 -0.02 3.48 16 8 C 0.01 0.60 5.07 84.95 0.43 1.03 16 9 N -0.87 -44.89 13.69 21.68 0.30 -44.59 16 10 Si 1.05 42.84 26.75 68.60 1.83 44.68 16 11 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 13 H -0.25 -9.55 5.51 99.48 0.55 -9.00 16 14 C 0.50 23.20 7.16 86.67 0.62 23.82 16 15 O -0.61 -30.37 15.86 -4.08 -0.06 -30.43 16 16 C -0.12 -5.13 5.26 -20.05 -0.11 -5.24 16 17 C -0.05 -1.86 7.98 22.57 0.18 -1.68 16 18 C 0.05 1.59 7.29 22.36 0.16 1.76 16 19 F -0.13 -4.42 17.17 44.97 0.77 -3.65 16 20 C 0.11 3.32 7.25 22.50 0.16 3.49 16 21 F -0.11 -3.10 16.36 44.97 0.74 -2.36 16 22 C -0.13 -3.76 5.88 -19.82 -0.12 -3.88 16 23 C -0.11 -2.26 9.65 71.24 0.69 -1.57 16 24 C 0.14 5.20 7.18 22.67 0.16 5.36 16 25 F -0.12 -4.50 15.37 44.97 0.69 -3.81 16 26 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.82 7.60 -2.39 -0.02 2.80 16 34 H 0.07 2.99 4.34 -2.39 -0.01 2.98 16 35 H 0.27 14.24 8.73 -92.71 -0.81 13.43 16 36 H 0.16 6.68 6.36 -2.91 -0.02 6.66 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.10 1.65 7.63 -2.39 -0.02 1.63 16 39 H 0.09 1.71 7.63 -2.39 -0.02 1.69 16 Total: -1.00 -56.04 335.68 7.90 -48.14 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.89 Total: 16.68 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.09 Total: -2.82 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -1.06 Total: -66.44 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.06 Total: -30.43 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 2.20 Total: -9.81 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.83 Total: 44.68 kcal Total: -56.04 7.90 -48.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148731057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.386 kcal (2) G-P(sol) polarization free energy of solvation -56.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds