Wall clock time and date at job start Tue Mar 31 2020 11:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.46983 * 2 1 4 4 C 1.34227 * 117.00346 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00162 * 179.97438 * 4 3 2 7 7 N 1.46498 * 109.46937 * 180.02562 * 6 4 3 8 8 C 1.46504 * 119.99800 * 270.00031 * 7 6 4 9 9 C 1.50703 * 109.47141 * 270.00034 * 8 7 6 10 10 H 1.07997 * 120.00077 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00141 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47392 * 90.00081 * 13 11 9 15 15 H 1.48503 * 109.47517 * 210.00048 * 13 11 9 16 16 H 1.48500 * 109.47374 * 329.99988 * 13 11 9 17 17 C 1.38405 * 119.99909 * 90.00102 * 7 6 4 18 18 N 1.32511 * 119.21307 * 179.97438 * 17 7 6 19 19 C 1.32269 * 120.73564 * 179.97438 * 18 17 7 20 20 C 1.38629 * 119.19530 * 0.02562 * 19 18 17 21 21 C 1.38580 * 118.55892 * 0.25192 * 20 19 18 22 22 C 1.50703 * 120.39895 * 179.74568 * 21 20 19 23 23 F 1.39902 * 109.46919 * 209.99770 * 22 21 20 24 24 F 1.39900 * 109.47020 * 329.99932 * 22 21 20 25 25 N 1.32296 * 119.19594 * 359.51034 * 21 20 19 26 26 H 1.09000 * 109.46601 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47302 * 299.99663 * 1 2 3 28 28 H 1.09001 * 109.47475 * 59.99885 * 1 2 3 29 29 H 1.09003 * 109.47302 * 240.00337 * 2 1 3 30 30 H 1.09001 * 109.47475 * 120.00115 * 2 1 3 31 31 H 1.09003 * 109.46973 * 60.00497 * 6 4 3 32 32 H 1.08998 * 109.47395 * 300.00209 * 6 4 3 33 33 H 1.08995 * 109.47072 * 30.00236 * 8 7 6 34 34 H 1.09006 * 109.46852 * 150.00552 * 8 7 6 35 35 H 0.96998 * 120.00271 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.39781 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.71605 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.47004 * 90.00114 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9206 2.9376 0.0000 7 7 5.3836 2.8610 0.0001 8 6 6.1150 2.8232 1.2690 9 6 6.4401 4.2291 1.7035 10 1 6.1323 5.0670 1.0955 11 6 7.1304 4.4457 2.8771 12 7 7.5057 3.4253 3.6172 13 14 7.5328 6.1883 3.4161 14 1 6.4289 6.7131 4.2594 15 1 8.7950 6.1857 4.1985 16 1 7.6945 7.0519 2.2188 17 6 6.0747 2.8243 -1.1985 18 7 7.3979 2.7555 -1.1802 19 6 8.0886 2.7184 -2.3076 20 6 7.4115 2.7528 -3.5168 21 6 6.0280 2.8307 -3.4994 22 6 5.2505 2.8763 -4.7896 23 9 4.0705 3.6030 -4.5975 24 9 6.0234 3.4948 -5.7782 25 7 5.3978 2.8597 -2.3366 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.5843 3.4702 0.8896 32 1 3.5851 3.4692 -0.8904 33 1 5.4998 2.3412 2.0287 34 1 7.0393 2.2602 1.1389 35 1 7.9911 3.5777 4.4431 36 1 9.1669 2.6619 -2.2863 37 1 7.9508 2.7242 -4.4521 38 1 5.0053 1.8612 -5.1021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:23 Heat of formation + Delta-G solvation = -119.359902 kcal Electronic energy + Delta-G solvation = -26542.706316 eV Core-core repulsion = 22250.152367 eV Total energy + Delta-G solvation = -4292.553949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.03413 -47.03772 -40.68028 -40.02860 -36.88085 -35.72186 -33.68553 -32.79619 -31.81668 -31.10030 -28.79473 -27.17499 -26.44534 -23.62928 -23.34451 -22.80544 -21.42385 -20.40977 -17.84088 -17.73870 -17.58400 -17.53313 -16.66584 -16.50684 -16.41160 -15.97364 -15.47615 -15.03697 -14.66945 -14.48366 -14.22460 -13.87848 -13.64944 -13.49824 -13.37401 -13.17099 -12.87721 -12.78218 -12.40124 -12.10318 -11.62727 -11.57766 -11.51020 -11.31488 -11.05421 -10.69132 -10.59868 -10.53596 -10.44131 -10.40998 -10.14641 -9.98210 -9.37816 -8.72264 -8.48181 -7.36599 -6.09763 -4.16423 1.26187 1.52524 2.57248 2.73064 3.19778 3.26796 3.33711 3.38138 3.60382 4.00527 4.18298 4.38407 4.39776 4.79788 4.90325 4.91332 4.92049 5.06055 5.19317 5.24645 5.26002 5.30670 5.45438 5.55207 5.66227 5.73119 5.77758 5.81068 5.90378 6.44030 6.64595 6.83655 7.20183 7.37346 7.57697 7.82899 8.02906 8.10876 8.13223 8.68226 8.89686 9.48452 10.97186 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.008217 B = 0.005725 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.644037 B = 4889.824752 C = 7450.644312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.362 6.362 4 C 0.446 3.554 5 O -0.499 6.499 6 C 0.142 3.858 7 N -0.542 5.542 8 C 0.260 3.740 9 C -0.529 4.529 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.899 3.101 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.585 3.415 18 N -0.524 5.524 19 C 0.198 3.802 20 C -0.284 4.284 21 C 0.137 3.863 22 C 0.330 3.670 23 F -0.187 7.187 24 F -0.194 7.194 25 N -0.561 5.561 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.264 0.736 36 H 0.169 0.831 37 H 0.144 0.856 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -4.632 -13.492 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.286 3.714 5 O -0.385 6.385 6 C 0.015 3.985 7 N -0.253 5.253 8 C 0.141 3.859 9 C -0.568 4.568 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.727 3.273 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C 0.230 3.770 18 N -0.245 5.245 19 C 0.027 3.973 20 C -0.311 4.311 21 C -0.013 4.013 22 C 0.275 3.725 23 F -0.168 7.168 24 F -0.175 7.175 25 N -0.285 5.285 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.186 0.814 37 H 0.161 0.839 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.464 -4.943 -12.174 15.629 hybrid contribution 0.794 0.754 -0.434 1.178 sum -7.670 -4.189 -12.608 15.341 Atomic orbital electron populations 1.21789 0.92867 1.02624 1.03478 1.22934 0.95086 0.80917 1.02325 1.86509 1.25020 1.31842 1.84506 1.24856 0.80272 0.94082 0.72162 1.90653 1.60326 1.42988 1.44577 1.20832 0.81051 0.89777 1.06871 1.46553 1.03048 1.71821 1.03926 1.19490 0.92509 0.97803 0.76055 1.21398 1.36821 0.92097 1.06506 0.92315 1.24899 0.95328 0.97310 0.96231 1.69938 1.38706 1.30088 1.14264 0.86485 0.77870 0.84359 0.78616 1.20587 1.21076 1.19927 1.19148 0.85357 0.87052 0.85437 1.68156 1.06806 1.18580 1.30933 1.23026 1.00487 0.87517 0.86315 1.22059 0.94624 1.13179 1.01263 1.21507 0.92076 0.94690 0.93047 1.20037 0.76378 0.92836 0.83215 1.93030 1.47797 1.80456 1.95480 1.93006 1.75937 1.85670 1.62871 1.67401 1.40992 1.22715 0.97364 0.90580 0.91457 0.91543 0.91667 0.91439 0.85557 0.86170 0.94802 0.92685 0.92599 0.81413 0.83860 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.97 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -5.60 10.22 -39.25 -0.40 -6.00 16 4 C 0.45 8.15 8.03 36.01 0.29 8.44 16 5 O -0.50 -10.70 16.18 -18.75 -0.30 -11.00 16 6 C 0.14 2.58 6.00 -5.19 -0.03 2.55 16 7 N -0.54 -11.97 2.04 -178.78 -0.37 -12.33 16 8 C 0.26 6.67 5.16 -5.19 -0.03 6.64 16 9 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 13 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.58 12.51 8.17 -322.82 -2.64 9.87 16 18 N -0.52 -11.12 9.11 -13.93 -0.13 -11.24 16 19 C 0.20 3.19 11.30 -17.22 -0.19 2.99 16 20 C -0.28 -4.00 9.51 -39.31 -0.37 -4.38 16 21 C 0.14 2.14 6.60 -82.26 -0.54 1.60 16 22 C 0.33 4.01 5.74 36.01 0.21 4.22 16 23 F -0.19 -2.66 17.09 2.25 0.04 -2.62 16 24 F -0.19 -2.31 16.55 2.25 0.04 -2.28 16 25 N -0.56 -10.55 8.77 -10.16 -0.09 -10.64 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.13 2.13 8.07 -51.93 -0.42 1.71 16 32 H 0.12 2.01 7.33 -51.93 -0.38 1.63 16 33 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.06 1.56 7.33 -51.93 -0.38 1.18 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.14 1.53 7.68 -52.49 -0.40 1.13 16 38 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -33.45 347.47 -7.89 -41.33 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.51 Total: -0.67 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: -3.12 Total: 18.97 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.16 Total: -59.18 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.70 Total: -17.00 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.08 Total: -4.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.45 -7.89 -41.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.026 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds