Wall clock time and date at job start Tue Mar 31 2020 11:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.46983 * 2 1 4 4 C 1.34227 * 117.00346 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00162 * 179.97438 * 4 3 2 7 7 N 1.46498 * 109.46937 * 180.02562 * 6 4 3 8 8 C 1.46504 * 119.99800 * 270.00031 * 7 6 4 9 9 C 1.50703 * 109.47141 * 270.00034 * 8 7 6 10 10 H 1.07997 * 120.00077 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00141 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47392 * 90.00081 * 13 11 9 15 15 H 1.48503 * 109.47517 * 210.00048 * 13 11 9 16 16 H 1.48500 * 109.47374 * 329.99988 * 13 11 9 17 17 C 1.38405 * 119.99909 * 90.00102 * 7 6 4 18 18 N 1.32511 * 119.21307 * 179.97438 * 17 7 6 19 19 C 1.32269 * 120.73564 * 179.97438 * 18 17 7 20 20 C 1.38629 * 119.19530 * 0.02562 * 19 18 17 21 21 C 1.38580 * 118.55892 * 0.25192 * 20 19 18 22 22 C 1.50703 * 120.39895 * 179.74568 * 21 20 19 23 23 F 1.39902 * 109.46919 * 209.99770 * 22 21 20 24 24 F 1.39900 * 109.47020 * 329.99932 * 22 21 20 25 25 N 1.32296 * 119.19594 * 359.51034 * 21 20 19 26 26 H 1.09000 * 109.46601 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47302 * 299.99663 * 1 2 3 28 28 H 1.09001 * 109.47475 * 59.99885 * 1 2 3 29 29 H 1.09003 * 109.47302 * 240.00337 * 2 1 3 30 30 H 1.09001 * 109.47475 * 120.00115 * 2 1 3 31 31 H 1.09003 * 109.46973 * 60.00497 * 6 4 3 32 32 H 1.08998 * 109.47395 * 300.00209 * 6 4 3 33 33 H 1.08995 * 109.47072 * 30.00236 * 8 7 6 34 34 H 1.09006 * 109.46852 * 150.00552 * 8 7 6 35 35 H 0.96998 * 120.00271 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.39781 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.71605 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.47004 * 90.00114 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9206 2.9376 0.0000 7 7 5.3836 2.8610 0.0001 8 6 6.1150 2.8232 1.2690 9 6 6.4401 4.2291 1.7035 10 1 6.1323 5.0670 1.0955 11 6 7.1304 4.4457 2.8771 12 7 7.5057 3.4253 3.6172 13 14 7.5328 6.1883 3.4161 14 1 6.4289 6.7131 4.2594 15 1 8.7950 6.1857 4.1985 16 1 7.6945 7.0519 2.2188 17 6 6.0747 2.8243 -1.1985 18 7 7.3979 2.7555 -1.1802 19 6 8.0886 2.7184 -2.3076 20 6 7.4115 2.7528 -3.5168 21 6 6.0280 2.8307 -3.4994 22 6 5.2505 2.8763 -4.7896 23 9 4.0705 3.6030 -4.5975 24 9 6.0234 3.4948 -5.7782 25 7 5.3978 2.8597 -2.3366 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.5843 3.4702 0.8896 32 1 3.5851 3.4692 -0.8904 33 1 5.4998 2.3412 2.0287 34 1 7.0393 2.2602 1.1389 35 1 7.9911 3.5777 4.4431 36 1 9.1669 2.6619 -2.2863 37 1 7.9508 2.7242 -4.4521 38 1 5.0053 1.8612 -5.1021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:22 Heat of formation + Delta-G solvation = -137.404367 kcal Electronic energy + Delta-G solvation = -26543.488782 eV Core-core repulsion = 22250.152367 eV Total energy + Delta-G solvation = -4293.336415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.01975 -48.03611 -42.07442 -41.41040 -38.31507 -37.24135 -35.06141 -34.80215 -32.86539 -32.42046 -30.45369 -28.44614 -28.05070 -25.24961 -24.72969 -23.91277 -22.82065 -21.84145 -19.18229 -19.04134 -18.98362 -18.52705 -18.47016 -17.76882 -17.70666 -17.31277 -16.98202 -16.45244 -16.23498 -15.93324 -15.48760 -15.07645 -14.94374 -14.78176 -14.57815 -14.37255 -14.25567 -13.91856 -13.63349 -13.42815 -13.28461 -12.95197 -12.77451 -12.67481 -12.53426 -12.51908 -12.18883 -12.15887 -11.88467 -11.82309 -11.59272 -11.55173 -11.05602 -10.62668 -10.09131 -8.95441 -8.17632 -6.34607 -0.01241 0.19647 1.12670 1.36073 1.41234 1.42432 1.53187 1.89184 2.38538 2.42655 2.84140 3.08460 3.10612 3.25238 3.53298 3.75069 3.87009 3.96889 4.00834 4.08785 4.13120 4.19499 4.31781 4.35361 4.37535 4.53710 4.81854 4.92319 4.93108 5.11807 5.17258 5.34473 5.40690 5.62610 5.82949 5.91855 6.04875 6.45565 6.70315 6.74485 7.27128 7.37681 8.87306 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.008217 B = 0.005725 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.644037 B = 4889.824752 C = 7450.644312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.453 3.547 5 O -0.537 6.537 6 C 0.142 3.858 7 N -0.560 5.560 8 C 0.286 3.714 9 C -0.535 4.535 10 H 0.054 0.946 11 C 0.015 3.985 12 N -0.926 5.926 13 Si 0.967 3.033 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.273 1.273 17 C 0.563 3.437 18 N -0.575 5.575 19 C 0.186 3.814 20 C -0.259 4.259 21 C 0.119 3.881 22 C 0.336 3.664 23 F -0.200 7.200 24 F -0.189 7.189 25 N -0.569 5.569 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.010 0.990 34 H 0.019 0.981 35 H 0.267 0.733 36 H 0.202 0.798 37 H 0.187 0.813 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 -3.974 -15.543 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.295 3.705 5 O -0.426 6.426 6 C 0.016 3.984 7 N -0.273 5.273 8 C 0.165 3.835 9 C -0.574 4.574 10 H 0.072 0.928 11 C -0.184 4.184 12 N -0.566 5.566 13 Si 0.792 3.208 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.198 1.198 17 C 0.208 3.792 18 N -0.297 5.297 19 C 0.017 3.983 20 C -0.285 4.285 21 C -0.030 4.030 22 C 0.282 3.718 23 F -0.181 7.181 24 F -0.171 7.171 25 N -0.293 5.293 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.219 0.781 37 H 0.204 0.796 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.047 -4.278 -14.299 17.454 hybrid contribution 0.992 0.474 0.038 1.100 sum -8.055 -3.804 -14.261 16.815 Atomic orbital electron populations 1.21811 0.89617 1.04472 1.03941 1.23302 0.97549 0.79309 1.02045 1.86504 1.23225 1.33783 1.83743 1.24812 0.80932 0.93607 0.71153 1.90630 1.61388 1.44041 1.46555 1.20952 0.79409 0.90112 1.07883 1.46261 1.04151 1.73667 1.03259 1.18807 0.90889 0.96372 0.77401 1.21578 1.36728 0.92508 1.06552 0.92818 1.25750 0.95058 1.01364 0.96227 1.70062 1.39467 1.32309 1.14753 0.85422 0.77933 0.79282 0.78153 1.19324 1.20641 1.19789 1.19247 0.85728 0.88381 0.85880 1.68110 1.07378 1.20405 1.33776 1.23715 1.02028 0.86591 0.85926 1.22502 0.94200 1.09640 1.02136 1.22317 0.93438 0.93822 0.93427 1.20343 0.75299 0.94593 0.81546 1.93007 1.48535 1.81029 1.95512 1.93018 1.75848 1.85882 1.62304 1.67409 1.41219 1.23051 0.97599 0.88001 0.91187 0.90845 0.91687 0.92139 0.84804 0.84643 0.97209 0.96282 0.92390 0.78130 0.79599 0.80946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.29 71.98 0.74 -1.54 16 2 C 0.05 1.28 6.19 71.98 0.45 1.72 16 3 O -0.36 -11.01 10.22 -51.38 -0.53 -11.54 16 4 C 0.45 17.02 8.03 71.24 0.57 17.59 16 5 O -0.54 -23.95 16.18 21.96 0.36 -23.59 16 6 C 0.14 5.35 6.00 85.63 0.51 5.86 16 7 N -0.56 -25.78 2.04 -719.54 -1.47 -27.25 16 8 C 0.29 15.50 5.16 85.63 0.44 15.94 16 9 C -0.53 -29.95 9.39 25.60 0.24 -29.71 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.02 0.86 5.46 84.65 0.46 1.33 16 12 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 13 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 C 0.56 24.62 8.17 261.49 2.14 26.76 16 18 N -0.58 -24.90 9.11 -197.98 -1.80 -26.71 16 19 C 0.19 5.78 11.30 84.72 0.96 6.74 16 20 C -0.26 -6.58 9.51 22.44 0.21 -6.37 16 21 C 0.12 3.48 6.60 42.57 0.28 3.76 16 22 C 0.34 7.11 5.74 71.24 0.41 7.52 16 23 F -0.20 -5.26 17.09 44.97 0.77 -4.49 16 24 F -0.19 -3.83 16.55 44.97 0.74 -3.08 16 25 N -0.57 -21.18 8.77 -186.05 -1.63 -22.81 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 31 H 0.13 4.68 8.07 -2.39 -0.02 4.66 16 32 H 0.14 4.58 7.33 -2.39 -0.02 4.56 16 33 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 34 H 0.02 1.16 7.33 -2.38 -0.02 1.14 16 35 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.20 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.19 3.08 7.68 -2.91 -0.02 3.05 16 38 H 0.17 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -75.82 347.47 7.25 -68.57 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.09 Total: 9.97 kcal Atomic # 6 Polarization: 42.17 SS G_CDS: 7.41 Total: 49.59 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -4.62 Total: -131.38 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.17 Total: -35.13 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 1.51 Total: -7.57 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.82 7.25 -68.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.837 kcal (2) G-P(sol) polarization free energy of solvation -75.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds