Wall clock time and date at job start Tue Mar 31 2020 11:22:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.45201 * 109.46983 * 2 1
4 4 C 1.34227 * 117.00346 * 179.97438 * 3 2 1
5 5 O 1.20827 * 119.99835 * 0.02562 * 4 3 2
6 6 C 1.50704 * 120.00162 * 179.97438 * 4 3 2
7 7 N 1.46498 * 109.46937 * 180.02562 * 6 4 3
8 8 C 1.46504 * 119.99800 * 270.00031 * 7 6 4
9 9 C 1.50703 * 109.47141 * 270.00034 * 8 7 6
10 10 H 1.07997 * 120.00077 * 0.02562 * 9 8 7
11 11 C 1.37876 * 119.99902 * 180.02562 * 9 8 7
12 12 N 1.31516 * 120.00141 * 0.02562 * 11 9 8
13 13 Si 1.86794 * 120.00009 * 180.02562 * 11 9 8
14 14 H 1.48501 * 109.47392 * 90.00081 * 13 11 9
15 15 H 1.48503 * 109.47517 * 210.00048 * 13 11 9
16 16 H 1.48500 * 109.47374 * 329.99988 * 13 11 9
17 17 C 1.38405 * 119.99909 * 90.00102 * 7 6 4
18 18 N 1.32511 * 119.21307 * 179.97438 * 17 7 6
19 19 C 1.32269 * 120.73564 * 179.97438 * 18 17 7
20 20 C 1.38629 * 119.19530 * 0.02562 * 19 18 17
21 21 C 1.38580 * 118.55892 * 0.25192 * 20 19 18
22 22 C 1.50703 * 120.39895 * 179.74568 * 21 20 19
23 23 F 1.39902 * 109.46919 * 209.99770 * 22 21 20
24 24 F 1.39900 * 109.47020 * 329.99932 * 22 21 20
25 25 N 1.32296 * 119.19594 * 359.51034 * 21 20 19
26 26 H 1.09000 * 109.46601 * 180.02562 * 1 2 3
27 27 H 1.09003 * 109.47302 * 299.99663 * 1 2 3
28 28 H 1.09001 * 109.47475 * 59.99885 * 1 2 3
29 29 H 1.09003 * 109.47302 * 240.00337 * 2 1 3
30 30 H 1.09001 * 109.47475 * 120.00115 * 2 1 3
31 31 H 1.09003 * 109.46973 * 60.00497 * 6 4 3
32 32 H 1.08998 * 109.47395 * 300.00209 * 6 4 3
33 33 H 1.08995 * 109.47072 * 30.00236 * 8 7 6
34 34 H 1.09006 * 109.46852 * 150.00552 * 8 7 6
35 35 H 0.96998 * 120.00271 * 180.02562 * 12 11 9
36 36 H 1.08002 * 120.39781 * 180.02562 * 19 18 17
37 37 H 1.08002 * 120.71605 * 179.97438 * 20 19 18
38 38 H 1.09006 * 109.47004 * 90.00114 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5450 0.0005
5 8 4.0808 0.5868 0.0005
6 6 3.9206 2.9376 0.0000
7 7 5.3836 2.8610 0.0001
8 6 6.1150 2.8232 1.2690
9 6 6.4401 4.2291 1.7035
10 1 6.1323 5.0670 1.0955
11 6 7.1304 4.4457 2.8771
12 7 7.5057 3.4253 3.6172
13 14 7.5328 6.1883 3.4161
14 1 6.4289 6.7131 4.2594
15 1 8.7950 6.1857 4.1985
16 1 7.6945 7.0519 2.2188
17 6 6.0747 2.8243 -1.1985
18 7 7.3979 2.7555 -1.1802
19 6 8.0886 2.7184 -2.3076
20 6 7.4115 2.7528 -3.5168
21 6 6.0280 2.8307 -3.4994
22 6 5.2505 2.8763 -4.7896
23 9 4.0705 3.6030 -4.5975
24 9 6.0234 3.4948 -5.7782
25 7 5.3978 2.8597 -2.3366
26 1 -0.3632 -1.0277 0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 1.8934 -0.5138 -0.8900
30 1 1.8934 -0.5138 0.8900
31 1 3.5843 3.4702 0.8896
32 1 3.5851 3.4692 -0.8904
33 1 5.4998 2.3412 2.0287
34 1 7.0393 2.2602 1.1389
35 1 7.9911 3.5777 4.4431
36 1 9.1669 2.6619 -2.2863
37 1 7.9508 2.7242 -4.4521
38 1 5.0053 1.8612 -5.1021
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001157161433.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:22:22
Heat of formation + Delta-G solvation = -137.404367 kcal
Electronic energy + Delta-G solvation = -26543.488782 eV
Core-core repulsion = 22250.152367 eV
Total energy + Delta-G solvation = -4293.336415 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.118 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-50.01975 -48.03611 -42.07442 -41.41040 -38.31507 -37.24135 -35.06141 -34.80215
-32.86539 -32.42046 -30.45369 -28.44614 -28.05070 -25.24961 -24.72969 -23.91277
-22.82065 -21.84145 -19.18229 -19.04134 -18.98362 -18.52705 -18.47016 -17.76882
-17.70666 -17.31277 -16.98202 -16.45244 -16.23498 -15.93324 -15.48760 -15.07645
-14.94374 -14.78176 -14.57815 -14.37255 -14.25567 -13.91856 -13.63349 -13.42815
-13.28461 -12.95197 -12.77451 -12.67481 -12.53426 -12.51908 -12.18883 -12.15887
-11.88467 -11.82309 -11.59272 -11.55173 -11.05602 -10.62668 -10.09131 -8.95441
-8.17632 -6.34607 -0.01241 0.19647 1.12670 1.36073 1.41234 1.42432
1.53187 1.89184 2.38538 2.42655 2.84140 3.08460 3.10612 3.25238
3.53298 3.75069 3.87009 3.96889 4.00834 4.08785 4.13120 4.19499
4.31781 4.35361 4.37535 4.53710 4.81854 4.92319 4.93108 5.11807
5.17258 5.34473 5.40690 5.62610 5.82949 5.91855 6.04875 6.45565
6.70315 6.74485 7.27128 7.37681 8.87306
Molecular weight = 315.12amu
Principal moments of inertia in cm(-1)
A = 0.008217 B = 0.005725 C = 0.003757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3406.644037 B = 4889.824752 C = 7450.644312
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.052 3.948
3 O -0.356 6.356
4 C 0.453 3.547
5 O -0.537 6.537
6 C 0.142 3.858
7 N -0.560 5.560
8 C 0.286 3.714
9 C -0.535 4.535
10 H 0.054 0.946
11 C 0.015 3.985
12 N -0.926 5.926
13 Si 0.967 3.033
14 H -0.268 1.268
15 H -0.281 1.281
16 H -0.273 1.273
17 C 0.563 3.437
18 N -0.575 5.575
19 C 0.186 3.814
20 C -0.259 4.259
21 C 0.119 3.881
22 C 0.336 3.664
23 F -0.200 7.200
24 F -0.189 7.189
25 N -0.569 5.569
26 H 0.101 0.899
27 H 0.069 0.931
28 H 0.073 0.927
29 H 0.065 0.935
30 H 0.060 0.940
31 H 0.134 0.866
32 H 0.136 0.864
33 H 0.010 0.990
34 H 0.019 0.981
35 H 0.267 0.733
36 H 0.202 0.798
37 H 0.187 0.813
38 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.689 -3.974 -15.543 18.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.022 4.022
3 O -0.273 6.273
4 C 0.295 3.705
5 O -0.426 6.426
6 C 0.016 3.984
7 N -0.273 5.273
8 C 0.165 3.835
9 C -0.574 4.574
10 H 0.072 0.928
11 C -0.184 4.184
12 N -0.566 5.566
13 Si 0.792 3.208
14 H -0.193 1.193
15 H -0.206 1.206
16 H -0.198 1.198
17 C 0.208 3.792
18 N -0.297 5.297
19 C 0.017 3.983
20 C -0.285 4.285
21 C -0.030 4.030
22 C 0.282 3.718
23 F -0.181 7.181
24 F -0.171 7.171
25 N -0.293 5.293
26 H 0.120 0.880
27 H 0.088 0.912
28 H 0.092 0.908
29 H 0.083 0.917
30 H 0.079 0.921
31 H 0.152 0.848
32 H 0.154 0.846
33 H 0.028 0.972
34 H 0.037 0.963
35 H 0.076 0.924
36 H 0.219 0.781
37 H 0.204 0.796
38 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -9.047 -4.278 -14.299 17.454
hybrid contribution 0.992 0.474 0.038 1.100
sum -8.055 -3.804 -14.261 16.815
Atomic orbital electron populations
1.21811 0.89617 1.04472 1.03941 1.23302 0.97549 0.79309 1.02045
1.86504 1.23225 1.33783 1.83743 1.24812 0.80932 0.93607 0.71153
1.90630 1.61388 1.44041 1.46555 1.20952 0.79409 0.90112 1.07883
1.46261 1.04151 1.73667 1.03259 1.18807 0.90889 0.96372 0.77401
1.21578 1.36728 0.92508 1.06552 0.92818 1.25750 0.95058 1.01364
0.96227 1.70062 1.39467 1.32309 1.14753 0.85422 0.77933 0.79282
0.78153 1.19324 1.20641 1.19789 1.19247 0.85728 0.88381 0.85880
1.68110 1.07378 1.20405 1.33776 1.23715 1.02028 0.86591 0.85926
1.22502 0.94200 1.09640 1.02136 1.22317 0.93438 0.93822 0.93427
1.20343 0.75299 0.94593 0.81546 1.93007 1.48535 1.81029 1.95512
1.93018 1.75848 1.85882 1.62304 1.67409 1.41219 1.23051 0.97599
0.88001 0.91187 0.90845 0.91687 0.92139 0.84804 0.84643 0.97209
0.96282 0.92390 0.78130 0.79599 0.80946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.28 10.29 71.98 0.74 -1.54 16
2 C 0.05 1.28 6.19 71.98 0.45 1.72 16
3 O -0.36 -11.01 10.22 -51.38 -0.53 -11.54 16
4 C 0.45 17.02 8.03 71.24 0.57 17.59 16
5 O -0.54 -23.95 16.18 21.96 0.36 -23.59 16
6 C 0.14 5.35 6.00 85.63 0.51 5.86 16
7 N -0.56 -25.78 2.04 -719.54 -1.47 -27.25 16
8 C 0.29 15.50 5.16 85.63 0.44 15.94 16
9 C -0.53 -29.95 9.39 25.60 0.24 -29.71 16
10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16
11 C 0.02 0.86 5.46 84.65 0.46 1.33 16
12 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16
13 Si 0.97 43.93 29.54 68.60 2.03 45.96 16
14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16
16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
17 C 0.56 24.62 8.17 261.49 2.14 26.76 16
18 N -0.58 -24.90 9.11 -197.98 -1.80 -26.71 16
19 C 0.19 5.78 11.30 84.72 0.96 6.74 16
20 C -0.26 -6.58 9.51 22.44 0.21 -6.37 16
21 C 0.12 3.48 6.60 42.57 0.28 3.76 16
22 C 0.34 7.11 5.74 71.24 0.41 7.52 16
23 F -0.20 -5.26 17.09 44.97 0.77 -4.49 16
24 F -0.19 -3.83 16.55 44.97 0.74 -3.08 16
25 N -0.57 -21.18 8.77 -186.05 -1.63 -22.81 16
26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
29 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16
30 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16
31 H 0.13 4.68 8.07 -2.39 -0.02 4.66 16
32 H 0.14 4.58 7.33 -2.39 -0.02 4.56 16
33 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16
34 H 0.02 1.16 7.33 -2.38 -0.02 1.14 16
35 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16
36 H 0.20 4.55 8.06 -2.91 -0.02 4.52 16
37 H 0.19 3.08 7.68 -2.91 -0.02 3.05 16
38 H 0.17 2.20 8.14 -2.38 -0.02 2.18 16
Total: -1.00 -75.82 347.47 7.25 -68.57
By element:
Atomic # 1 Polarization: 8.88 SS G_CDS: 1.09 Total: 9.97 kcal
Atomic # 6 Polarization: 42.17 SS G_CDS: 7.41 Total: 49.59 kcal
Atomic # 7 Polarization: -126.76 SS G_CDS: -4.62 Total: -131.38 kcal
Atomic # 8 Polarization: -34.96 SS G_CDS: -0.17 Total: -35.13 kcal
Atomic # 9 Polarization: -9.08 SS G_CDS: 1.51 Total: -7.57 kcal
Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal
Total: -75.82 7.25 -68.57 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157161433.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.837 kcal
(2) G-P(sol) polarization free energy of solvation -75.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.658 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.254 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds