Wall clock time and date at job start Tue Mar 31 2020 10:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47387 * 2 1 4 4 H 1.08999 * 109.47085 * 305.82713 * 3 2 1 5 5 C 1.50692 * 109.47244 * 185.82502 * 3 2 1 6 6 H 1.08000 * 119.99887 * 272.67199 * 5 3 2 7 7 C 1.37873 * 120.00260 * 92.67571 * 5 3 2 8 8 N 1.31513 * 120.00258 * 178.07741 * 7 5 3 9 9 Si 1.86804 * 119.99881 * 358.08455 * 7 5 3 10 10 H 1.48497 * 109.47382 * 85.87964 * 9 7 5 11 11 H 1.48508 * 109.47065 * 205.88326 * 9 7 5 12 12 H 1.48506 * 109.46856 * 325.87742 * 9 7 5 13 13 N 1.46497 * 109.46691 * 65.82072 * 3 2 1 14 14 C 1.34771 * 120.00629 * 275.00010 * 13 3 2 15 15 O 1.21557 * 119.99678 * 0.02562 * 14 13 3 16 16 C 1.47839 * 120.00579 * 180.02562 * 14 13 3 17 17 C 1.39601 * 120.14416 * 353.53113 * 16 14 13 18 18 C 1.37934 * 119.85545 * 179.79079 * 17 16 14 19 19 C 1.50701 * 119.92829 * 180.22849 * 18 17 16 20 20 F 1.39902 * 109.46759 * 180.25491 * 19 18 17 21 21 F 1.39893 * 109.47248 * 300.25332 * 19 18 17 22 22 F 1.39899 * 109.46892 * 60.25684 * 19 18 17 23 23 C 1.38383 * 120.14294 * 0.48460 * 18 17 16 24 24 C 1.38333 * 120.29371 * 359.74423 * 23 18 17 25 25 C 1.37982 * 120.14712 * 0.02562 * 24 23 18 26 26 C 1.50694 * 120.07787 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47035 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47452 * 59.99694 * 1 2 3 29 29 H 1.08999 * 109.46934 * 299.99344 * 1 2 3 30 30 H 1.09002 * 109.47452 * 120.00306 * 2 1 3 31 31 H 1.09004 * 109.46708 * 240.00223 * 2 1 3 32 32 H 0.97001 * 119.99921 * 180.02562 * 8 7 5 33 33 H 0.97007 * 119.99651 * 95.00400 * 13 3 2 34 34 H 1.08003 * 120.07046 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.85285 * 179.72513 * 23 18 17 36 36 H 1.08005 * 119.93144 * 180.02562 * 24 23 18 37 37 H 1.09003 * 109.47711 * 263.77017 * 26 25 24 38 38 H 1.08997 * 109.46901 * 23.77081 * 26 25 24 39 39 H 1.08994 * 109.47184 * 143.76759 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5940 1.9856 -0.8332 5 6 3.5400 1.4449 -0.1442 6 1 4.1668 1.3706 0.7321 7 6 4.1122 1.5421 -1.3948 8 7 5.4210 1.5823 -1.5178 9 14 3.0285 1.6168 -2.9145 10 1 2.6255 3.0237 -3.1665 11 1 3.7818 1.1003 -4.0855 12 1 1.8168 0.7856 -2.6997 13 7 1.6694 2.0914 1.2600 14 6 0.4539 2.6577 1.3945 15 8 -0.3352 2.6297 0.4702 16 6 0.0801 3.3131 2.6659 17 6 0.9272 3.2309 3.7724 18 6 0.5746 3.8483 4.9545 19 6 1.4903 3.7650 6.1485 20 9 0.9204 4.4575 7.2223 21 9 1.6737 2.4242 6.5029 22 9 2.7266 4.3362 5.8287 23 6 -0.6206 4.5394 5.0479 24 6 -1.4668 4.6206 3.9566 25 6 -1.1239 4.0116 2.7669 26 6 -2.0471 4.1006 1.5792 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 5.8235 1.6510 -2.3977 33 1 2.2990 2.1135 1.9977 34 1 1.8580 2.6877 3.7022 35 1 -0.8941 5.0173 5.9770 36 1 -2.3981 5.1619 4.0358 37 1 -2.6690 3.2065 1.5345 38 1 -2.6827 4.9806 1.6783 39 1 -1.4576 4.1792 0.6658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186276481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:50 Heat of formation + Delta-G solvation = -170.856035 kcal Electronic energy + Delta-G solvation = -26754.723324 eV Core-core repulsion = 22440.016374 eV Total energy + Delta-G solvation = -4314.706950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.27224 -47.81068 -47.70447 -40.35986 -38.43848 -35.43862 -33.38219 -32.61882 -32.04719 -30.70897 -28.52162 -27.44906 -24.87781 -24.05572 -22.85620 -21.74152 -20.57377 -19.66863 -18.74787 -18.57971 -18.47684 -17.19062 -16.13546 -15.84568 -15.78320 -15.28451 -14.80536 -14.61244 -14.44504 -14.39163 -14.17115 -14.14277 -13.88210 -13.86251 -13.66002 -13.35312 -12.83911 -12.59899 -12.38513 -12.23034 -12.19627 -11.97346 -11.89548 -11.79922 -11.37495 -10.97771 -10.77133 -10.71931 -9.98383 -9.89644 -9.27460 -9.24599 -9.17287 -9.10058 -8.77836 -8.08752 -6.26979 -4.31386 0.61941 0.85676 2.51894 2.88343 3.22638 3.31246 3.37271 3.56357 3.72424 3.78254 3.93003 4.28665 4.30959 4.53992 4.60256 4.77209 5.02108 5.07957 5.25733 5.34112 5.47804 5.68089 5.82065 5.84472 5.92352 5.99804 6.03511 6.14118 6.18574 6.39714 6.55500 6.63322 6.73324 6.89393 6.94367 7.21801 7.29187 7.47047 8.04850 8.46220 8.71358 8.81960 9.34053 10.84606 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.004281 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.826386 B = 6539.594035 C = 7580.378889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.239 3.761 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.694 5.694 14 C 0.543 3.457 15 O -0.539 6.539 16 C -0.129 4.129 17 C -0.033 4.033 18 C -0.201 4.201 19 C 0.511 3.489 20 F -0.180 7.180 21 F -0.176 7.176 22 F -0.174 7.174 23 C -0.053 4.053 24 C -0.134 4.134 25 C 0.005 3.995 26 C -0.126 4.126 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.268 0.732 33 H 0.392 0.608 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.679 5.421 13.579 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.137 3.863 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.341 5.341 14 C 0.329 3.671 15 O -0.419 6.419 16 C -0.133 4.133 17 C -0.052 4.052 18 C -0.202 4.202 19 C 0.456 3.544 20 F -0.161 7.161 21 F -0.157 7.157 22 F -0.155 7.155 23 C -0.071 4.071 24 C -0.152 4.152 25 C 0.004 3.996 26 C -0.182 4.182 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.226 0.774 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.997 5.373 12.779 19.003 hybrid contribution 0.216 0.025 -0.097 0.238 sum -12.781 5.398 12.683 18.797 Atomic orbital electron populations 1.21907 0.97379 0.98947 1.01996 1.22127 0.93758 0.99403 1.01400 1.19153 0.95729 0.89047 0.82347 0.93051 1.20990 0.88541 1.52569 0.95080 0.90308 1.24910 0.94910 0.93466 0.98929 1.69878 1.09615 1.48393 1.24426 0.86938 0.81264 0.79456 0.82495 1.19894 1.21173 1.18113 1.46568 1.14054 1.55147 1.18368 1.18055 0.83100 0.79383 0.86531 1.90687 1.50487 1.59653 1.41094 1.20121 0.95852 1.02457 0.94823 1.21107 0.98717 0.94620 0.90718 1.19808 0.98080 1.08211 0.94141 1.18243 0.79423 0.73854 0.82837 1.93149 1.84650 1.79668 1.58636 1.93229 1.95543 1.34072 1.92859 1.93245 1.44866 1.84762 1.92646 1.21104 0.91652 0.94849 0.99538 1.21043 1.00476 1.01776 0.91946 1.20343 0.92905 0.90776 0.95596 1.21187 0.98301 1.01702 0.97003 0.95070 0.93032 0.93168 0.92929 0.91890 0.92191 0.77351 0.84274 0.84291 0.84389 0.90117 0.92370 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.53 37.15 0.32 -2.44 16 2 C -0.13 -2.67 5.32 -26.73 -0.14 -2.81 16 3 C 0.24 5.43 1.81 -69.09 -0.12 5.30 16 4 H 0.05 1.26 5.17 -51.93 -0.27 1.00 16 5 C -0.53 -13.94 9.05 -34.45 -0.31 -14.25 16 6 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 9 Si 0.87 20.91 26.36 -169.99 -4.48 16.43 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.26 -5.96 6.39 56.52 0.36 -5.60 16 13 N -0.69 -13.36 4.98 -55.89 -0.28 -13.64 16 14 C 0.54 9.80 6.31 -12.33 -0.08 9.72 16 15 O -0.54 -10.68 10.48 5.32 0.06 -10.63 16 16 C -0.13 -1.89 5.87 -104.97 -0.62 -2.51 16 17 C -0.03 -0.43 9.07 -39.18 -0.36 -0.78 16 18 C -0.20 -2.35 5.37 -104.68 -0.56 -2.91 16 19 C 0.51 5.91 3.31 36.01 0.12 6.03 16 20 F -0.18 -1.93 15.96 2.25 0.04 -1.89 16 21 F -0.18 -2.15 17.23 2.25 0.04 -2.11 16 22 F -0.17 -2.19 17.24 2.25 0.04 -2.16 16 23 C -0.05 -0.53 9.43 -39.49 -0.37 -0.90 16 24 C -0.13 -1.34 9.66 -39.64 -0.38 -1.72 16 25 C 0.00 0.06 5.91 -104.23 -0.62 -0.55 16 26 C -0.13 -1.53 8.75 36.00 0.31 -1.22 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 29 H 0.05 0.94 5.63 -51.93 -0.29 0.65 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.37 7.15 -51.93 -0.37 1.00 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.39 6.82 6.67 -40.82 -0.27 6.55 16 34 H 0.14 1.73 6.46 -52.48 -0.34 1.40 16 35 H 0.14 1.05 7.14 -52.49 -0.37 0.68 16 36 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 39 H 0.10 1.57 5.83 -51.93 -0.30 1.27 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -29.09 329.49 -6.10 -35.19 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.34 Total: 5.69 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.91 Total: -6.91 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.50 Total: -38.59 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.06 Total: -10.63 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.11 Total: -6.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.48 Total: 16.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.09 -6.10 -35.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186276481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.666 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds