Wall clock time and date at job start Tue Mar 31 2020 10:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47387 * 2 1 4 4 H 1.08999 * 109.47085 * 305.82713 * 3 2 1 5 5 C 1.50692 * 109.47244 * 185.82502 * 3 2 1 6 6 H 1.08000 * 119.99887 * 272.67199 * 5 3 2 7 7 C 1.37873 * 120.00260 * 92.67571 * 5 3 2 8 8 N 1.31513 * 120.00258 * 178.07741 * 7 5 3 9 9 Si 1.86804 * 119.99881 * 358.08455 * 7 5 3 10 10 H 1.48497 * 109.47382 * 85.87964 * 9 7 5 11 11 H 1.48508 * 109.47065 * 205.88326 * 9 7 5 12 12 H 1.48506 * 109.46856 * 325.87742 * 9 7 5 13 13 N 1.46497 * 109.46691 * 65.82072 * 3 2 1 14 14 C 1.34771 * 120.00629 * 275.00010 * 13 3 2 15 15 O 1.21557 * 119.99678 * 0.02562 * 14 13 3 16 16 C 1.47839 * 120.00579 * 180.02562 * 14 13 3 17 17 C 1.39601 * 120.14416 * 353.53113 * 16 14 13 18 18 C 1.37934 * 119.85545 * 179.79079 * 17 16 14 19 19 C 1.50701 * 119.92829 * 180.22849 * 18 17 16 20 20 F 1.39902 * 109.46759 * 180.25491 * 19 18 17 21 21 F 1.39893 * 109.47248 * 300.25332 * 19 18 17 22 22 F 1.39899 * 109.46892 * 60.25684 * 19 18 17 23 23 C 1.38383 * 120.14294 * 0.48460 * 18 17 16 24 24 C 1.38333 * 120.29371 * 359.74423 * 23 18 17 25 25 C 1.37982 * 120.14712 * 0.02562 * 24 23 18 26 26 C 1.50694 * 120.07787 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47035 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47452 * 59.99694 * 1 2 3 29 29 H 1.08999 * 109.46934 * 299.99344 * 1 2 3 30 30 H 1.09002 * 109.47452 * 120.00306 * 2 1 3 31 31 H 1.09004 * 109.46708 * 240.00223 * 2 1 3 32 32 H 0.97001 * 119.99921 * 180.02562 * 8 7 5 33 33 H 0.97007 * 119.99651 * 95.00400 * 13 3 2 34 34 H 1.08003 * 120.07046 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.85285 * 179.72513 * 23 18 17 36 36 H 1.08005 * 119.93144 * 180.02562 * 24 23 18 37 37 H 1.09003 * 109.47711 * 263.77017 * 26 25 24 38 38 H 1.08997 * 109.46901 * 23.77081 * 26 25 24 39 39 H 1.08994 * 109.47184 * 143.76759 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5940 1.9856 -0.8332 5 6 3.5400 1.4449 -0.1442 6 1 4.1668 1.3706 0.7321 7 6 4.1122 1.5421 -1.3948 8 7 5.4210 1.5823 -1.5178 9 14 3.0285 1.6168 -2.9145 10 1 2.6255 3.0237 -3.1665 11 1 3.7818 1.1003 -4.0855 12 1 1.8168 0.7856 -2.6997 13 7 1.6694 2.0914 1.2600 14 6 0.4539 2.6577 1.3945 15 8 -0.3352 2.6297 0.4702 16 6 0.0801 3.3131 2.6659 17 6 0.9272 3.2309 3.7724 18 6 0.5746 3.8483 4.9545 19 6 1.4903 3.7650 6.1485 20 9 0.9204 4.4575 7.2223 21 9 1.6737 2.4242 6.5029 22 9 2.7266 4.3362 5.8287 23 6 -0.6206 4.5394 5.0479 24 6 -1.4668 4.6206 3.9566 25 6 -1.1239 4.0116 2.7669 26 6 -2.0471 4.1006 1.5792 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 5.8235 1.6510 -2.3977 33 1 2.2990 2.1135 1.9977 34 1 1.8580 2.6877 3.7022 35 1 -0.8941 5.0173 5.9770 36 1 -2.3981 5.1619 4.0358 37 1 -2.6690 3.2065 1.5345 38 1 -2.6827 4.9806 1.6783 39 1 -1.4576 4.1792 0.6658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186276481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:50 Heat of formation + Delta-G solvation = -187.510615 kcal Electronic energy + Delta-G solvation = -26755.445521 eV Core-core repulsion = 22440.016374 eV Total energy + Delta-G solvation = -4315.429147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.19734 -48.71083 -48.66347 -41.54650 -39.68195 -37.07157 -34.63365 -34.15630 -33.62872 -31.91542 -29.68186 -29.07094 -25.89685 -25.20960 -24.51655 -22.87167 -21.81551 -21.29662 -19.97947 -19.51373 -19.40612 -18.84959 -17.55069 -17.42989 -16.71487 -16.55641 -16.11660 -15.97890 -15.57430 -15.36147 -15.28502 -15.09687 -14.95844 -14.82001 -14.80585 -14.75988 -14.54329 -13.83230 -13.76324 -13.66795 -13.53060 -13.19352 -13.10300 -12.90707 -12.83991 -12.54837 -12.36617 -12.28752 -11.86300 -11.62422 -11.21115 -10.88397 -10.54903 -10.21311 -10.08112 -9.67361 -8.39013 -6.45828 -0.34540 -0.07901 1.30091 1.34336 1.45067 1.59760 1.78799 2.27012 2.34932 2.58819 2.65950 2.96735 3.04153 3.37882 3.63131 3.66436 3.83006 4.05913 4.21983 4.30796 4.41289 4.43424 4.54608 4.60068 4.75314 4.83750 4.87088 4.93470 5.04432 5.10813 5.21076 5.24635 5.27353 5.41592 5.47996 5.55422 5.66169 5.76748 6.11108 6.58689 6.83325 7.19315 7.37574 8.76011 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.004281 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.826386 B = 6539.594035 C = 7580.378889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.246 3.754 4 H 0.034 0.966 5 C -0.530 4.530 6 H 0.052 0.948 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.245 1.245 13 N -0.701 5.701 14 C 0.543 3.457 15 O -0.559 6.559 16 C -0.152 4.152 17 C -0.039 4.039 18 C -0.206 4.206 19 C 0.514 3.486 20 F -0.171 7.171 21 F -0.181 7.181 22 F -0.183 7.183 23 C -0.039 4.039 24 C -0.120 4.120 25 C -0.002 4.002 26 C -0.122 4.122 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.270 0.730 33 H 0.399 0.601 34 H 0.135 0.865 35 H 0.171 0.829 36 H 0.178 0.822 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.427 6.322 15.069 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.142 3.858 4 H 0.052 0.948 5 C -0.568 4.568 6 H 0.070 0.930 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.169 1.169 13 N -0.350 5.350 14 C 0.331 3.669 15 O -0.441 6.441 16 C -0.155 4.155 17 C -0.058 4.058 18 C -0.207 4.207 19 C 0.460 3.540 20 F -0.152 7.152 21 F -0.162 7.162 22 F -0.164 7.164 23 C -0.057 4.057 24 C -0.137 4.137 25 C -0.003 4.003 26 C -0.178 4.178 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.234 0.766 34 H 0.153 0.847 35 H 0.188 0.812 36 H 0.195 0.805 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.762 6.276 14.296 22.186 hybrid contribution 1.040 -0.195 -0.402 1.132 sum -14.722 6.080 13.894 21.136 Atomic orbital electron populations 1.21770 0.95566 1.00364 1.01352 1.22035 0.95291 0.97892 1.01273 1.18865 0.93239 0.90270 0.83396 0.94825 1.21211 0.90353 1.51193 0.94080 0.92964 1.25616 0.95851 0.93569 1.01751 1.69989 1.11239 1.50635 1.25141 0.86075 0.80100 0.79361 0.79431 1.20136 1.20522 1.16893 1.46328 1.15211 1.55948 1.17469 1.18513 0.82056 0.78618 0.87665 1.90680 1.50853 1.60244 1.42280 1.19840 0.97718 1.04509 0.93481 1.21076 0.98546 0.95117 0.91109 1.19884 0.98930 1.08486 0.93440 1.18203 0.79118 0.73625 0.83045 1.93164 1.84421 1.79427 1.58215 1.93220 1.95564 1.34545 1.92917 1.93231 1.45530 1.84875 1.92752 1.21523 0.90289 0.93132 1.00744 1.21416 1.01561 1.00446 0.90324 1.20542 0.92105 0.90711 0.96936 1.21108 0.98138 1.03110 0.95438 0.92553 0.94257 0.93193 0.92235 0.92848 0.92080 0.76556 0.84703 0.81160 0.80459 0.90348 0.89117 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 8.53 71.98 0.61 -4.31 16 2 C -0.13 -5.23 5.32 30.59 0.16 -5.07 16 3 C 0.25 11.31 1.81 44.24 0.08 11.39 16 4 H 0.03 1.68 5.17 -2.39 -0.01 1.67 16 5 C -0.53 -28.52 9.05 25.60 0.23 -28.29 16 6 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 7 C 0.03 1.82 5.47 84.65 0.46 2.28 16 8 N -0.93 -55.62 13.96 21.45 0.30 -55.32 16 9 Si 0.93 43.80 26.36 68.60 1.81 45.60 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.25 -11.03 6.39 99.48 0.64 -10.40 16 13 N -0.70 -27.51 4.98 -449.00 -2.24 -29.75 16 14 C 0.54 19.67 6.31 86.79 0.55 20.22 16 15 O -0.56 -22.27 10.48 -3.90 -0.04 -22.31 16 16 C -0.15 -4.34 5.87 -20.09 -0.12 -4.45 16 17 C -0.04 -1.00 9.07 22.53 0.20 -0.80 16 18 C -0.21 -4.35 5.37 -19.90 -0.11 -4.46 16 19 C 0.51 10.95 3.31 71.24 0.24 11.18 16 20 F -0.17 -3.18 15.96 44.97 0.72 -2.46 16 21 F -0.18 -4.20 17.23 44.97 0.77 -3.43 16 22 F -0.18 -4.42 17.24 44.97 0.78 -3.65 16 23 C -0.04 -0.61 9.43 22.33 0.21 -0.40 16 24 C -0.12 -1.86 9.66 22.23 0.21 -1.65 16 25 C 0.00 -0.04 5.91 -19.61 -0.12 -0.16 16 26 C -0.12 -2.73 8.75 71.23 0.62 -2.10 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.53 7.89 -2.39 -0.02 1.51 16 29 H 0.05 1.83 5.63 -2.39 -0.01 1.82 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 2.30 7.15 -2.39 -0.02 2.28 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.40 14.36 6.67 -92.70 -0.62 13.74 16 34 H 0.14 3.41 6.46 -2.91 -0.02 3.40 16 35 H 0.17 1.66 7.14 -2.91 -0.02 1.64 16 36 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 1.39 8.04 -2.39 -0.02 1.37 16 39 H 0.07 2.15 5.83 -2.39 -0.01 2.14 16 Total: -1.00 -64.40 329.49 5.77 -58.63 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.42 Total: 19.30 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 3.25 Total: -6.63 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.94 Total: -85.07 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 2.27 Total: -9.53 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.81 Total: 45.60 kcal Total: -64.40 5.77 -58.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186276481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.881 kcal (2) G-P(sol) polarization free energy of solvation -64.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds