Wall clock time and date at job start Tue Mar 31 2020 10:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47173 * 2 1 4 4 C 1.52994 * 109.47154 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47147 * 181.06013 * 4 3 2 6 6 C 1.46900 * 111.00032 * 303.57601 * 5 4 3 7 7 C 1.50698 * 109.47380 * 293.43510 * 6 5 4 8 8 H 1.08009 * 119.99824 * 4.38576 * 7 6 5 9 9 C 1.37875 * 120.00317 * 184.38613 * 7 6 5 10 10 N 1.31517 * 119.99742 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00111 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46664 * 90.00084 * 11 9 7 13 13 H 1.48496 * 109.47091 * 209.99924 * 11 9 7 14 14 H 1.48497 * 109.47192 * 330.00529 * 11 9 7 15 15 C 1.46895 * 111.00064 * 67.53107 * 5 4 3 16 16 C 1.50702 * 109.47303 * 75.01222 * 15 5 4 17 17 C 1.38717 * 120.02272 * 81.41034 * 16 15 5 18 18 O 1.35938 * 120.02137 * 359.95800 * 17 16 15 19 19 C 1.38687 * 119.95006 * 179.97438 * 17 16 15 20 20 C 1.38184 * 119.99334 * 359.97438 * 19 17 16 21 21 C 1.38399 * 120.04544 * 359.97438 * 20 19 17 22 22 F 1.35099 * 119.97484 * 180.02562 * 21 20 19 23 23 C 1.38230 * 120.02081 * 261.13544 * 16 15 5 24 24 Cl 1.73601 * 119.99673 * 0.02562 * 23 16 15 25 25 H 1.09005 * 109.47138 * 300.00291 * 1 2 3 26 26 H 1.08999 * 109.47622 * 59.99644 * 1 2 3 27 27 H 1.08995 * 109.47042 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46983 * 240.00273 * 2 1 3 29 29 H 1.08997 * 109.47163 * 120.00099 * 2 1 3 30 30 H 1.08996 * 109.46943 * 60.00249 * 3 2 1 31 31 H 1.09006 * 109.46898 * 300.00016 * 3 2 1 32 32 H 1.08997 * 109.47444 * 61.05820 * 4 3 2 33 33 H 1.08999 * 109.47570 * 301.05842 * 4 3 2 34 34 H 1.09005 * 109.47222 * 53.43686 * 6 5 4 35 35 H 1.09004 * 109.46905 * 173.43305 * 6 5 4 36 36 H 0.96996 * 119.99703 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47609 * 195.01238 * 15 5 4 38 38 H 1.09004 * 109.47160 * 315.01443 * 15 5 4 39 39 H 0.96702 * 114.00580 * 90.00091 * 18 17 16 40 40 H 1.07999 * 120.00286 * 180.02562 * 19 17 16 41 41 H 1.07999 * 119.97751 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0596 2.8273 0.0250 6 6 3.5196 3.5976 -1.1032 7 6 4.0770 3.0558 -2.3942 8 1 4.7074 2.1788 -2.3843 9 6 3.7823 3.6794 -3.5880 10 7 3.0143 4.7470 -3.6001 11 14 4.4740 3.0081 -5.1882 12 1 3.5276 2.0160 -5.7587 13 1 4.6635 4.1222 -6.1515 14 1 5.7803 2.3524 -4.9263 15 6 3.7415 3.4746 1.3047 16 6 4.6669 2.9546 2.3744 17 6 5.9459 3.4769 2.4996 18 8 6.3656 4.4575 1.6569 19 6 6.7961 2.9977 3.4849 20 6 6.3687 2.0010 4.3413 21 6 5.0922 1.4808 4.2169 22 9 4.6756 0.5067 5.0552 23 6 4.2399 1.9609 3.2351 24 17 2.6372 1.3110 3.0835 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9454 -0.9001 33 1 3.9337 0.9122 0.8794 34 1 2.4328 3.5140 -1.1133 35 1 3.8023 4.6449 -0.9965 36 1 2.8067 5.1855 -4.4400 37 1 3.8678 4.5529 1.2078 38 1 2.7098 3.2526 1.5776 39 1 6.1825 5.3529 1.9730 40 1 7.7919 3.4040 3.5835 41 1 7.0308 1.6283 5.1088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237124442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:36 Heat of formation + Delta-G solvation = -90.722970 kcal Electronic energy + Delta-G solvation = -24967.984013 eV Core-core repulsion = 21208.548573 eV Total energy + Delta-G solvation = -3759.435439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.98017 -41.08899 -38.98081 -37.96867 -37.04547 -35.37558 -34.67304 -32.65027 -30.50003 -29.83443 -28.78651 -26.40438 -25.07206 -23.80674 -23.10456 -22.42211 -20.94366 -19.42776 -18.46553 -18.24925 -18.06463 -17.21816 -16.72920 -16.52942 -16.43481 -16.14221 -15.64029 -15.42448 -15.15002 -14.89522 -14.31762 -14.26765 -14.16182 -13.85031 -13.64286 -13.44482 -13.07373 -12.97241 -12.84230 -12.57688 -12.49878 -12.36663 -12.23440 -11.99449 -11.92679 -11.89686 -11.63134 -11.46007 -11.26970 -11.16035 -10.55832 -9.92475 -9.49088 -8.84248 -8.15768 -6.23179 -0.12872 -0.02903 0.94477 1.40757 1.41556 1.53036 2.25763 2.43295 2.97990 3.16693 3.24322 3.47813 3.60369 3.81789 4.02311 4.05237 4.06900 4.30543 4.39739 4.41359 4.46514 4.58033 4.74833 4.80742 4.84986 4.86302 4.88591 4.96650 5.01907 5.09928 5.20665 5.25368 5.32144 5.37728 5.47053 5.53372 5.58336 5.70837 6.10701 6.40684 6.66892 6.89335 6.91090 7.44863 8.94795 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.005098 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.618477 B = 5490.531103 C = 7006.317894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.073 3.927 5 N -0.527 5.527 6 C 0.211 3.789 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.960 3.040 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.090 3.910 16 C -0.078 4.078 17 C 0.128 3.872 18 O -0.493 6.493 19 C -0.106 4.106 20 C -0.115 4.115 21 C 0.082 3.918 22 F -0.133 7.133 23 C -0.068 4.068 24 Cl -0.047 7.047 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.066 0.934 34 H -0.023 1.023 35 H 0.003 0.997 36 H 0.262 0.738 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.407 0.593 40 H 0.175 0.825 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 -5.028 18.088 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.184 4.184 4 C -0.055 4.055 5 N -0.249 5.249 6 C 0.085 3.915 7 C -0.550 4.550 8 H 0.072 0.928 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.785 3.215 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.193 1.193 15 C -0.038 4.038 16 C -0.080 4.080 17 C 0.081 3.919 18 O -0.305 6.305 19 C -0.124 4.124 20 C -0.134 4.134 21 C 0.062 3.938 22 F -0.111 7.111 23 C -0.097 4.097 24 Cl -0.018 7.018 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.085 0.915 34 H -0.005 1.005 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.267 0.733 40 H 0.193 0.807 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.227 -5.441 17.579 18.881 hybrid contribution -1.299 0.271 -0.788 1.544 sum 2.928 -5.170 16.791 17.811 Atomic orbital electron populations 1.21725 0.95222 1.02069 1.01287 1.21388 0.96397 0.95656 1.01691 1.22130 0.97573 0.97882 1.00773 1.21976 0.92745 0.90234 1.00593 1.62223 1.59225 1.02390 1.01089 1.19403 0.91942 0.92146 0.88012 1.21376 1.29650 1.12252 0.91765 0.92756 1.25752 0.95682 0.95246 1.02485 1.70066 1.38607 1.21138 1.27514 0.85527 0.78908 0.77952 0.79109 1.20059 1.20706 1.19341 1.20911 0.95578 0.98796 0.88499 1.19971 0.95868 0.96400 0.95737 1.18325 0.90029 0.93149 0.90347 1.84948 1.81580 1.17985 1.45998 1.21662 1.01470 0.96926 0.92349 1.21292 0.93251 0.97173 1.01694 1.17516 0.94163 0.90986 0.91112 1.91512 1.90622 1.59857 1.69157 1.20871 0.88940 1.00120 0.99743 1.98374 1.21523 1.84831 1.97111 0.92938 0.93733 0.91225 0.92556 0.91600 0.92026 0.94087 0.92890 0.91549 1.00506 0.97849 0.92872 0.90554 0.93346 0.73341 0.80740 0.80146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.91 71.98 0.71 -3.23 16 2 C -0.11 -3.49 5.93 30.60 0.18 -3.31 16 3 C -0.14 -5.40 3.84 30.59 0.12 -5.28 16 4 C 0.07 2.92 4.59 86.30 0.40 3.31 16 5 N -0.53 -22.96 4.62 -905.38 -4.18 -27.14 16 6 C 0.21 11.14 4.40 85.56 0.38 11.51 16 7 C -0.51 -29.27 8.65 25.60 0.22 -29.05 16 8 H 0.05 3.12 6.97 -2.91 -0.02 3.10 16 9 C 0.01 0.35 5.46 84.65 0.46 0.81 16 10 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 11 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 15 C 0.09 3.23 4.47 85.56 0.38 3.62 16 16 C -0.08 -2.33 4.94 -19.75 -0.10 -2.43 16 17 C 0.13 3.30 6.68 22.49 0.15 3.45 16 18 O -0.49 -13.28 12.71 -92.85 -1.18 -14.46 16 19 C -0.11 -1.96 9.98 22.36 0.22 -1.74 16 20 C -0.12 -2.03 10.02 22.30 0.22 -1.81 16 21 C 0.08 1.95 7.27 22.39 0.16 2.11 16 22 F -0.13 -3.22 16.83 44.97 0.76 -2.46 16 23 C -0.07 -1.91 5.58 22.35 0.12 -1.78 16 24 Cl -0.05 -1.34 22.98 -2.72 -0.06 -1.40 16 25 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 2.20 4.74 -2.39 -0.01 2.18 16 31 H 0.04 1.83 6.27 -2.38 -0.01 1.81 16 32 H 0.05 2.35 6.91 -2.39 -0.02 2.34 16 33 H 0.07 2.44 5.68 -2.39 -0.01 2.43 16 34 H -0.02 -1.27 5.90 -2.38 -0.01 -1.28 16 35 H 0.00 0.20 7.82 -2.39 -0.02 0.18 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.08 2.75 7.41 -2.39 -0.02 2.73 16 38 H 0.05 1.73 4.64 -2.38 -0.01 1.72 16 39 H 0.41 6.82 9.06 -74.06 -0.67 6.15 16 40 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -68.04 343.55 1.68 -66.37 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.40 Total: 11.56 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.64 Total: -23.81 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.90 Total: -82.91 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.18 Total: -14.46 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.76 Total: -2.46 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.06 Total: -1.40 kcal Total: -68.04 1.68 -66.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237124442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.357 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds