Wall clock time and date at job start Tue Mar 31 2020 11:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 119.99683 * 2 1 4 4 C 1.34770 * 120.00104 * 180.02562 * 2 1 3 5 5 O 1.21559 * 120.00243 * 4.63700 * 4 2 1 6 6 C 1.47763 * 119.99932 * 184.64262 * 4 2 1 7 7 C 1.39837 * 120.03660 * 324.88363 * 6 4 2 8 8 C 1.37922 * 120.20041 * 179.97438 * 7 6 4 9 9 C 1.38415 * 120.28719 * 0.02562 * 8 7 6 10 10 F 1.35094 * 119.96584 * 179.97438 * 9 8 7 11 11 C 1.40078 * 120.06733 * 359.97438 * 9 8 7 12 12 C 1.47735 * 120.09807 * 180.02562 * 11 9 8 13 13 N 1.32883 * 120.25615 * 310.11688 * 12 11 9 14 14 C 1.31997 * 120.07672 * 179.97438 * 13 12 11 15 15 C 1.39195 * 120.59640 * 359.97438 * 14 13 12 16 16 N 1.31612 * 120.50684 * 0.02562 * 15 14 13 17 17 C 1.33967 * 119.90289 * 359.97438 * 16 15 14 18 18 C 1.40780 * 120.28935 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99891 * 155.09116 * 18 17 16 20 20 C 1.40163 * 119.99784 * 335.09895 * 18 17 16 21 21 N 1.30687 * 119.99856 * 183.22078 * 20 18 17 22 22 Si 1.86804 * 120.00282 * 3.21587 * 20 18 17 23 23 H 1.48498 * 109.47271 * 84.65525 * 22 20 18 24 24 H 1.48493 * 109.47159 * 204.65885 * 22 20 18 25 25 H 1.48503 * 109.46669 * 324.65615 * 22 20 18 26 26 C 1.39297 * 120.03698 * 145.13888 * 6 4 2 27 27 H 1.09001 * 109.47430 * 239.99411 * 1 2 3 28 28 H 1.08999 * 109.47407 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47039 * 119.99895 * 1 2 3 30 30 H 1.08994 * 109.47612 * 269.61845 * 3 2 1 31 31 H 1.09004 * 109.47424 * 29.62315 * 3 2 1 32 32 H 1.09010 * 109.47149 * 149.61944 * 3 2 1 33 33 H 1.07998 * 119.89683 * 359.97438 * 7 6 4 34 34 H 1.08007 * 119.85477 * 179.97438 * 8 7 6 35 35 H 1.08004 * 119.70391 * 179.97438 * 14 13 12 36 36 H 1.07997 * 119.74970 * 179.72416 * 15 14 13 37 37 H 0.96998 * 119.99799 * 180.02562 * 21 20 18 38 38 H 1.07993 * 120.14164 * 0.02562 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1388 -1.1671 -0.0005 5 8 1.5341 -2.2181 -0.0861 6 6 3.6128 -1.1692 0.1031 7 6 4.3584 -0.1523 -0.5014 8 6 5.7344 -0.1507 -0.4064 9 6 6.3874 -1.1550 0.2869 10 9 7.7355 -1.1473 0.3754 11 6 5.6520 -2.1793 0.8969 12 6 6.3483 -3.2513 1.6376 13 7 7.3662 -3.8983 1.0798 14 6 7.9861 -4.8552 1.7450 15 6 7.5845 -5.1972 3.0332 16 7 6.5793 -4.5715 3.6079 17 6 5.9358 -3.5972 2.9511 18 6 4.8599 -2.9222 3.5583 19 1 4.6044 -1.9209 3.2444 20 6 4.1205 -3.5496 4.5704 21 7 3.0832 -2.9483 5.0902 22 14 4.6177 -5.2454 5.1760 23 1 5.6704 -5.1110 6.2148 24 1 3.4347 -5.9304 5.7558 25 1 5.1434 -6.0426 4.0388 26 6 4.2615 -2.1871 0.7984 27 1 -0.3634 -0.5139 0.8899 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8901 30 1 2.3850 1.5800 -1.0276 31 1 1.6054 2.0301 0.5080 32 1 3.1469 1.1402 0.5198 33 1 3.8553 0.6341 -1.0443 34 1 6.3048 0.6372 -0.8758 35 1 8.8124 -5.3774 1.2857 36 1 8.0986 -5.9853 3.5633 37 1 2.5717 -3.3824 5.7908 38 1 3.6894 -2.9766 1.2628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241982368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:25 Heat of formation + Delta-G solvation = -2.996360 kcal Electronic energy + Delta-G solvation = -26030.567956 eV Core-core repulsion = 22173.829134 eV Total energy + Delta-G solvation = -3856.738822 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.34383 -40.18015 -39.44527 -37.64713 -35.54232 -34.24638 -33.11470 -32.02667 -30.66136 -29.53971 -27.84305 -26.43001 -26.17085 -23.88476 -22.71692 -22.10393 -21.37915 -19.46416 -18.00840 -17.19602 -17.17263 -16.52815 -16.24853 -15.86288 -15.60297 -15.19498 -14.97875 -14.84065 -14.13506 -13.99735 -13.70598 -13.49924 -13.18960 -12.95903 -12.78132 -12.75124 -12.55564 -12.37196 -12.09587 -11.95525 -11.80012 -11.53381 -11.28470 -11.18730 -10.71625 -10.55350 -10.00443 -9.72313 -9.56566 -9.18405 -8.78987 -8.66150 -8.40675 -7.96722 -7.57683 -7.15623 -4.95885 1.09210 1.47335 2.13388 2.51317 2.93698 3.11785 3.27944 3.32921 3.42025 3.99265 4.13637 4.36720 4.55680 4.65125 4.93290 5.02863 5.06059 5.18867 5.21457 5.27664 5.37204 5.55345 5.58563 5.63723 5.68435 5.76997 5.83011 5.96129 6.13788 6.21974 6.29198 6.45965 6.48120 6.54942 6.68000 6.77838 6.91004 7.17664 7.35643 7.39917 7.82183 8.08548 8.24074 8.31834 8.74365 9.19339 9.75098 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.005944 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.770019 B = 4709.294400 C = 6392.785399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.621 5.621 3 C 0.068 3.932 4 C 0.567 3.433 5 O -0.530 6.530 6 C -0.153 4.153 7 C -0.086 4.086 8 C -0.170 4.170 9 C 0.131 3.869 10 F -0.129 7.129 11 C -0.018 4.018 12 C -0.010 4.010 13 N -0.397 5.397 14 C -0.103 4.103 15 C 0.108 3.892 16 N -0.526 5.526 17 C 0.210 3.790 18 C -0.384 4.384 19 H 0.105 0.895 20 C 0.079 3.921 21 N -0.779 5.779 22 Si 0.984 3.016 23 H -0.271 1.271 24 H -0.319 1.319 25 H -0.253 1.253 26 C -0.001 4.001 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.294 0.706 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.944 8.200 -7.233 11.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.355 5.355 3 C -0.075 4.075 4 C 0.357 3.643 5 O -0.406 6.406 6 C -0.156 4.156 7 C -0.104 4.104 8 C -0.189 4.189 9 C 0.110 3.890 10 F -0.107 7.107 11 C -0.020 4.020 12 C -0.157 4.157 13 N -0.108 5.108 14 C -0.263 4.263 15 C -0.060 4.060 16 N -0.247 5.247 17 C 0.086 3.914 18 C -0.414 4.414 19 H 0.123 0.877 20 C -0.146 4.146 21 N -0.401 5.401 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.251 1.251 25 H -0.178 1.178 26 C -0.021 4.021 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.105 0.895 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.467 7.746 -7.110 10.800 hybrid contribution 0.518 -0.508 0.466 0.862 sum -1.949 7.238 -6.645 10.017 Atomic orbital electron populations 1.21600 0.78960 1.01989 1.02503 1.47574 1.06963 1.06264 1.74702 1.22329 0.98690 0.85098 1.01378 1.18293 0.87158 0.83101 0.75795 1.90779 1.69913 1.31024 1.48914 1.19634 0.92545 0.98407 1.05060 1.21422 0.93017 0.97388 0.98591 1.20832 0.94820 0.99757 1.03463 1.18073 0.77172 0.95307 0.98418 1.91489 1.28971 1.96115 1.94163 1.18249 0.92345 0.93685 0.97723 1.19744 1.00089 1.02521 0.93366 1.67760 1.03852 1.03722 1.35514 1.22558 1.05727 1.02704 0.95335 1.23243 0.92747 0.96413 0.93613 1.68036 1.09717 1.11890 1.35050 1.19207 0.92980 0.89630 0.89598 1.19508 1.06823 1.02214 1.12838 0.87693 1.26438 0.92684 1.02330 0.93183 1.69542 1.12433 1.39169 1.18907 0.84912 0.74901 0.79104 0.79508 1.19723 1.25101 1.17825 1.21284 0.92453 0.95950 0.92410 0.91946 0.90828 0.92171 0.92393 0.91195 0.89333 0.84204 0.84677 0.84360 0.84291 0.89522 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 10.17 59.84 0.61 1.63 16 2 N -0.62 -8.31 3.27 -190.68 -0.62 -8.93 16 3 C 0.07 0.64 8.78 59.84 0.53 1.16 16 4 C 0.57 10.00 7.40 -12.37 -0.09 9.91 16 5 O -0.53 -11.27 16.82 5.31 0.09 -11.19 16 6 C -0.15 -2.67 5.36 -105.01 -0.56 -3.24 16 7 C -0.09 -1.18 7.46 -39.10 -0.29 -1.47 16 8 C -0.17 -2.50 9.99 -39.63 -0.40 -2.90 16 9 C 0.13 2.49 7.26 -38.83 -0.28 2.21 16 10 F -0.13 -2.59 16.47 2.25 0.04 -2.56 16 11 C -0.02 -0.38 5.05 -104.89 -0.53 -0.91 16 12 C -0.01 -0.24 6.11 -82.11 -0.50 -0.74 16 13 N -0.40 -9.31 9.97 -8.98 -0.09 -9.40 16 14 C -0.10 -2.17 11.22 -17.13 -0.19 -2.36 16 15 C 0.11 2.29 11.21 -17.29 -0.19 2.09 16 16 N -0.53 -12.90 5.08 -10.72 -0.05 -12.95 16 17 C 0.21 5.30 6.13 -84.55 -0.52 4.79 16 18 C -0.38 -9.87 7.85 -37.90 -0.30 -10.17 16 19 H 0.11 2.75 6.69 -52.49 -0.35 2.40 16 20 C 0.08 2.00 5.52 -17.32 -0.10 1.90 16 21 N -0.78 -19.67 13.92 55.56 0.77 -18.89 16 22 Si 0.98 22.78 25.83 -169.99 -4.39 18.39 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.32 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.25 -6.06 6.13 56.52 0.35 -5.71 16 26 C 0.00 -0.02 7.51 -38.75 -0.29 -0.31 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.41 7.13 -51.93 -0.37 0.04 16 31 H 0.07 0.51 7.91 -51.93 -0.41 0.10 16 32 H 0.09 0.92 5.29 -51.92 -0.27 0.64 16 33 H 0.14 1.41 4.98 -52.49 -0.26 1.15 16 34 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.14 2.43 8.06 -52.48 -0.42 2.00 16 36 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.29 6.77 8.29 -40.82 -0.34 6.43 16 38 H 0.15 3.39 7.25 -52.49 -0.38 3.01 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -31.59 324.52 -6.24 -37.83 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -3.76 Total: 1.23 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -3.11 Total: 1.59 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.01 Total: -50.18 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.39 Total: 18.39 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.59 -6.24 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241982368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.830 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds