Wall clock time and date at job start Tue Mar 31 2020 11:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 119.99683 * 2 1 4 4 C 1.34770 * 120.00104 * 180.02562 * 2 1 3 5 5 O 1.21559 * 120.00243 * 4.63700 * 4 2 1 6 6 C 1.47763 * 119.99932 * 184.64262 * 4 2 1 7 7 C 1.39837 * 120.03660 * 324.88363 * 6 4 2 8 8 C 1.37922 * 120.20041 * 179.97438 * 7 6 4 9 9 C 1.38415 * 120.28719 * 0.02562 * 8 7 6 10 10 F 1.35094 * 119.96584 * 179.97438 * 9 8 7 11 11 C 1.40078 * 120.06733 * 359.97438 * 9 8 7 12 12 C 1.47735 * 120.09807 * 180.02562 * 11 9 8 13 13 N 1.32883 * 120.25615 * 310.11688 * 12 11 9 14 14 C 1.31997 * 120.07672 * 179.97438 * 13 12 11 15 15 C 1.39195 * 120.59640 * 359.97438 * 14 13 12 16 16 N 1.31612 * 120.50684 * 0.02562 * 15 14 13 17 17 C 1.33967 * 119.90289 * 359.97438 * 16 15 14 18 18 C 1.40780 * 120.28935 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99891 * 155.09116 * 18 17 16 20 20 C 1.40163 * 119.99784 * 335.09895 * 18 17 16 21 21 N 1.30687 * 119.99856 * 183.22078 * 20 18 17 22 22 Si 1.86804 * 120.00282 * 3.21587 * 20 18 17 23 23 H 1.48498 * 109.47271 * 84.65525 * 22 20 18 24 24 H 1.48493 * 109.47159 * 204.65885 * 22 20 18 25 25 H 1.48503 * 109.46669 * 324.65615 * 22 20 18 26 26 C 1.39297 * 120.03698 * 145.13888 * 6 4 2 27 27 H 1.09001 * 109.47430 * 239.99411 * 1 2 3 28 28 H 1.08999 * 109.47407 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47039 * 119.99895 * 1 2 3 30 30 H 1.08994 * 109.47612 * 269.61845 * 3 2 1 31 31 H 1.09004 * 109.47424 * 29.62315 * 3 2 1 32 32 H 1.09010 * 109.47149 * 149.61944 * 3 2 1 33 33 H 1.07998 * 119.89683 * 359.97438 * 7 6 4 34 34 H 1.08007 * 119.85477 * 179.97438 * 8 7 6 35 35 H 1.08004 * 119.70391 * 179.97438 * 14 13 12 36 36 H 1.07997 * 119.74970 * 179.72416 * 15 14 13 37 37 H 0.96998 * 119.99799 * 180.02562 * 21 20 18 38 38 H 1.07993 * 120.14164 * 0.02562 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1388 -1.1671 -0.0005 5 8 1.5341 -2.2181 -0.0861 6 6 3.6128 -1.1692 0.1031 7 6 4.3584 -0.1523 -0.5014 8 6 5.7344 -0.1507 -0.4064 9 6 6.3874 -1.1550 0.2869 10 9 7.7355 -1.1473 0.3754 11 6 5.6520 -2.1793 0.8969 12 6 6.3483 -3.2513 1.6376 13 7 7.3662 -3.8983 1.0798 14 6 7.9861 -4.8552 1.7450 15 6 7.5845 -5.1972 3.0332 16 7 6.5793 -4.5715 3.6079 17 6 5.9358 -3.5972 2.9511 18 6 4.8599 -2.9222 3.5583 19 1 4.6044 -1.9209 3.2444 20 6 4.1205 -3.5496 4.5704 21 7 3.0832 -2.9483 5.0902 22 14 4.6177 -5.2454 5.1760 23 1 5.6704 -5.1110 6.2148 24 1 3.4347 -5.9304 5.7558 25 1 5.1434 -6.0426 4.0388 26 6 4.2615 -2.1871 0.7984 27 1 -0.3634 -0.5139 0.8899 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8901 30 1 2.3850 1.5800 -1.0276 31 1 1.6054 2.0301 0.5080 32 1 3.1469 1.1402 0.5198 33 1 3.8553 0.6341 -1.0443 34 1 6.3048 0.6372 -0.8758 35 1 8.8124 -5.3774 1.2857 36 1 8.0986 -5.9853 3.5633 37 1 2.5717 -3.3824 5.7908 38 1 3.6894 -2.9766 1.2628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241982368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:24 Heat of formation + Delta-G solvation = -24.198007 kcal Electronic energy + Delta-G solvation = -26031.487328 eV Core-core repulsion = 22173.829134 eV Total energy + Delta-G solvation = -3857.658194 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.84488 -41.59112 -41.10095 -39.04568 -36.73715 -36.10371 -34.82414 -33.71745 -31.99858 -31.10082 -28.89140 -28.08817 -27.34614 -25.48371 -24.22470 -23.68697 -22.91451 -20.74382 -19.89604 -18.61114 -18.53920 -18.17366 -17.76988 -17.22611 -17.05923 -16.70453 -16.44636 -16.22203 -15.73797 -15.34863 -15.18786 -15.08760 -14.75296 -14.50743 -14.10315 -13.93890 -13.72903 -13.64055 -13.56492 -13.33554 -13.17186 -13.13271 -12.98863 -12.73473 -12.36591 -11.97755 -11.81579 -11.45800 -11.10107 -11.02304 -10.31082 -9.96093 -9.72944 -9.61985 -9.29112 -9.03813 -6.84829 -0.33014 -0.00470 0.44594 0.73130 1.37812 1.46722 1.54487 1.60125 2.00656 2.27069 2.48845 2.62550 3.20612 3.32490 3.43923 3.49033 3.78563 3.90229 3.99326 4.11081 4.27907 4.31564 4.33290 4.45067 4.51119 4.63572 4.70845 4.76538 4.86349 4.91990 4.93150 4.97209 5.00997 5.10063 5.19987 5.31701 5.50505 5.58630 5.79598 5.87330 6.24558 6.26479 6.36058 6.92904 7.04562 7.38522 7.91636 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.005944 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.770019 B = 4709.294400 C = 6392.785399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.612 5.612 3 C 0.054 3.946 4 C 0.556 3.444 5 O -0.584 6.584 6 C -0.157 4.157 7 C -0.054 4.054 8 C -0.147 4.147 9 C 0.116 3.884 10 F -0.139 7.139 11 C -0.051 4.051 12 C -0.023 4.023 13 N -0.417 5.417 14 C -0.089 4.089 15 C 0.098 3.902 16 N -0.546 5.546 17 C 0.196 3.804 18 C -0.409 4.409 19 H 0.084 0.916 20 C 0.050 3.950 21 N -0.811 5.811 22 Si 1.029 2.971 23 H -0.270 1.270 24 H -0.311 1.311 25 H -0.267 1.267 26 C -0.022 4.022 27 H 0.041 0.959 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.193 0.807 34 H 0.184 0.816 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.301 0.699 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 10.348 -9.131 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.344 5.344 3 C -0.087 4.087 4 C 0.345 3.655 5 O -0.465 6.465 6 C -0.161 4.161 7 C -0.072 4.072 8 C -0.165 4.165 9 C 0.096 3.904 10 F -0.117 7.117 11 C -0.054 4.054 12 C -0.168 4.168 13 N -0.129 5.129 14 C -0.250 4.250 15 C -0.068 4.068 16 N -0.268 5.268 17 C 0.071 3.929 18 C -0.440 4.440 19 H 0.102 0.898 20 C -0.171 4.171 21 N -0.434 5.434 22 Si 0.860 3.140 23 H -0.196 1.196 24 H -0.242 1.242 25 H -0.193 1.193 26 C -0.042 4.042 27 H 0.060 0.940 28 H 0.138 0.862 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.210 0.790 34 H 0.202 0.798 35 H 0.198 0.802 36 H 0.201 0.799 37 H 0.112 0.888 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.463 9.960 -9.011 13.511 hybrid contribution 0.316 -1.126 0.883 1.465 sum -1.147 8.834 -8.128 12.059 Atomic orbital electron populations 1.21802 0.77651 1.04617 1.01460 1.47735 1.08048 1.06342 1.72257 1.22702 0.98427 0.83546 1.04024 1.18477 0.87322 0.83806 0.75868 1.90742 1.70748 1.33236 1.51784 1.19782 0.93019 0.98506 1.04761 1.21957 0.92587 0.96468 0.96216 1.21328 0.95157 0.98900 1.01133 1.18361 0.76818 0.96061 0.99210 1.91457 1.29646 1.96225 1.94376 1.18274 0.92651 0.94745 0.99700 1.20132 1.00224 1.03179 0.93269 1.67878 1.04344 1.04685 1.36005 1.23370 1.05391 1.01073 0.95183 1.23983 0.91855 0.96836 0.94149 1.67993 1.10722 1.12131 1.35917 1.19366 0.93105 0.90137 0.90278 1.19335 1.08356 1.01985 1.14351 0.89832 1.26931 0.92690 1.04237 0.93253 1.69543 1.13342 1.40337 1.20194 0.84248 0.74719 0.76599 0.78429 1.19569 1.24207 1.19322 1.20944 0.92257 0.96671 0.94334 0.94014 0.86223 0.92371 0.88592 0.88297 0.90266 0.79018 0.79839 0.80221 0.79852 0.88787 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.78 10.17 127.77 1.30 3.08 16 2 N -0.61 -15.19 3.27 -875.46 -2.87 -18.06 16 3 C 0.05 0.76 8.78 127.77 1.12 1.88 16 4 C 0.56 19.85 7.40 86.76 0.64 20.49 16 5 O -0.58 -26.35 16.82 -3.90 -0.07 -26.41 16 6 C -0.16 -5.51 5.36 -20.12 -0.11 -5.62 16 7 C -0.05 -1.32 7.46 22.58 0.17 -1.15 16 8 C -0.15 -3.80 9.99 22.24 0.22 -3.58 16 9 C 0.12 4.33 7.26 22.76 0.17 4.49 16 10 F -0.14 -5.46 16.47 44.97 0.74 -4.72 16 11 C -0.05 -2.30 5.05 -20.04 -0.10 -2.40 16 12 C -0.02 -1.15 6.11 42.42 0.26 -0.89 16 13 N -0.42 -19.59 9.97 -182.31 -1.82 -21.41 16 14 C -0.09 -3.63 11.22 84.90 0.95 -2.67 16 15 C 0.10 4.03 11.21 84.96 0.95 4.98 16 16 N -0.55 -27.09 5.08 -187.84 -0.96 -28.04 16 17 C 0.20 10.35 6.13 40.36 0.25 10.60 16 18 C -0.41 -22.51 7.85 23.36 0.18 -22.33 16 19 H 0.08 4.79 6.69 -2.91 -0.02 4.77 16 20 C 0.05 2.68 5.52 85.33 0.47 3.15 16 21 N -0.81 -43.22 13.92 21.86 0.30 -42.92 16 22 Si 1.03 48.38 25.83 68.60 1.77 50.16 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.31 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.27 -12.98 6.13 99.48 0.61 -12.37 16 26 C -0.02 -0.96 7.51 22.81 0.17 -0.79 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.12 1.34 7.79 -2.39 -0.02 1.32 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.10 0.72 7.13 -2.39 -0.02 0.70 16 31 H 0.10 0.92 7.91 -2.38 -0.02 0.90 16 32 H 0.08 1.31 5.29 -2.38 -0.01 1.30 16 33 H 0.19 2.66 4.98 -2.91 -0.01 2.65 16 34 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.18 5.67 8.06 -2.91 -0.02 5.65 16 36 H 0.18 5.74 8.06 -2.91 -0.02 5.72 16 37 H 0.30 14.54 8.29 -92.71 -0.77 13.78 16 38 H 0.10 5.44 7.25 -2.91 -0.02 5.42 16 Total: -1.00 -76.77 324.52 4.78 -71.99 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.02 Total: 10.15 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.65 Total: 9.26 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -5.33 Total: -110.42 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.07 Total: -26.41 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.74 Total: -4.72 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.77 Total: 50.16 kcal Total: -76.77 4.78 -71.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241982368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.793 kcal (2) G-P(sol) polarization free energy of solvation -76.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds