Wall clock time and date at job start Tue Mar 31 2020 11:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99864 * 2 1 4 4 C 1.34779 * 120.00507 * 179.97438 * 2 1 3 5 5 O 1.21564 * 119.99668 * 4.88079 * 4 2 1 6 6 C 1.47748 * 120.00187 * 184.88015 * 4 2 1 7 7 C 1.39755 * 120.05551 * 321.11338 * 6 4 2 8 8 C 1.37875 * 120.14580 * 179.97438 * 7 6 4 9 9 C 1.38481 * 120.24834 * 359.78759 * 8 7 6 10 10 F 1.35102 * 119.94668 * 180.25646 * 9 8 7 11 11 C 1.39763 * 120.10533 * 0.46692 * 9 8 7 12 12 C 1.48274 * 120.07217 * 179.79203 * 11 9 8 13 13 C 1.40053 * 119.98973 * 179.69855 * 12 11 9 14 14 N 1.32165 * 120.29544 * 179.97438 * 13 12 11 15 15 C 1.31890 * 120.28491 * 359.77627 * 14 13 12 16 16 C 1.40817 * 119.96732 * 0.49913 * 15 14 13 17 17 C 1.41328 * 120.14296 * 179.75290 * 16 15 14 18 18 H 1.08006 * 119.99820 * 349.20587 * 17 16 15 19 19 C 1.40043 * 119.99767 * 169.20265 * 17 16 15 20 20 N 1.30732 * 120.00468 * 331.28835 * 19 17 16 21 21 Si 1.86802 * 119.99748 * 151.29137 * 19 17 16 22 22 H 1.48506 * 109.46702 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47073 * 299.99782 * 21 19 17 24 24 H 1.48494 * 109.47313 * 60.00104 * 21 19 17 25 25 N 1.32525 * 119.98311 * 359.72302 * 12 11 9 26 26 C 1.39074 * 119.86063 * 359.51140 * 11 9 8 27 27 H 1.09003 * 109.47351 * 269.99836 * 1 2 3 28 28 H 1.08994 * 109.47359 * 30.00147 * 1 2 3 29 29 H 1.09006 * 109.46765 * 150.00106 * 1 2 3 30 30 H 1.09000 * 109.46845 * 264.35920 * 3 2 1 31 31 H 1.09002 * 109.47074 * 24.36114 * 3 2 1 32 32 H 1.08998 * 109.47097 * 144.36194 * 3 2 1 33 33 H 1.08005 * 119.93123 * 0.02562 * 7 6 4 34 34 H 1.08003 * 119.87832 * 180.02562 * 8 7 6 35 35 H 1.08003 * 119.85286 * 0.02562 * 13 12 11 36 36 H 1.08003 * 120.01569 * 180.23366 * 15 14 13 37 37 H 0.97004 * 119.99689 * 354.78051 * 20 19 17 38 38 H 1.07998 * 120.13138 * 180.23619 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5344 -2.2181 -0.0886 6 6 3.6124 -1.1693 0.1094 7 6 4.3648 -0.1977 -0.5561 8 6 5.7399 -0.1977 -0.4554 9 6 6.3834 -1.1568 0.3086 10 9 7.7308 -1.1480 0.4072 11 6 5.6416 -2.1366 0.9742 12 6 6.3316 -3.1660 1.7882 13 6 5.5861 -4.1432 2.4596 14 7 6.1950 -5.0639 3.1864 15 6 7.5104 -5.0730 3.2823 16 6 8.2710 -4.0924 2.6168 17 6 9.6804 -4.0956 2.7213 18 1 10.1669 -4.7344 3.4437 19 6 10.4461 -3.2706 1.8881 20 7 10.0001 -2.9432 0.7036 21 14 12.1049 -2.6380 2.4691 22 1 12.7109 -1.7922 1.4095 23 1 11.9228 -1.8319 3.7029 24 1 13.0001 -3.7874 2.7565 25 7 7.6537 -3.1606 1.8806 26 6 4.2543 -2.1405 0.8761 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5139 30 1 2.4665 1.5329 -1.0227 31 1 1.5683 2.0515 0.4239 32 1 3.1024 1.1659 0.5988 33 1 3.8681 0.5554 -1.1499 34 1 6.3171 0.5555 -0.9711 35 1 4.5089 -4.1450 2.3823 36 1 8.0037 -5.8297 3.8744 37 1 9.1756 -3.3315 0.3715 38 1 3.6765 -2.8933 1.3917 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241984615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:27 Heat of formation + Delta-G solvation = -5.270428 kcal Electronic energy + Delta-G solvation = -25553.889417 eV Core-core repulsion = 21697.051984 eV Total energy + Delta-G solvation = -3856.837433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.17034 -40.41272 -39.24919 -37.88368 -35.78473 -34.39166 -33.00280 -31.41933 -30.85855 -29.32286 -27.98101 -26.51296 -25.87837 -23.83699 -23.16671 -21.96870 -21.31050 -19.62439 -18.31463 -17.24152 -17.13815 -16.69032 -16.20060 -15.84253 -15.43411 -15.07861 -14.97458 -14.83003 -14.20692 -14.10552 -13.75392 -13.49315 -13.25872 -13.12412 -12.90707 -12.76756 -12.59880 -12.41577 -12.25279 -12.16324 -11.78384 -11.34168 -11.23988 -10.91311 -10.47160 -10.23063 -10.03816 -9.99952 -9.93879 -9.41665 -8.95537 -8.79478 -8.55184 -7.86474 -7.64676 -7.10216 -4.80854 0.83517 1.13553 2.38014 2.68034 2.77060 2.91423 3.10121 3.20079 3.31701 3.79679 3.92826 4.32665 4.46298 4.53779 4.72707 4.81283 4.90426 4.97217 5.02660 5.15624 5.32023 5.36255 5.42286 5.49589 5.55696 5.73455 5.80116 5.92112 6.08124 6.16117 6.17457 6.22826 6.38745 6.52863 6.70403 6.93960 6.99972 7.10416 7.39461 7.59311 7.73113 8.01012 8.33039 8.43586 9.03236 9.49139 9.93575 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.021039 B = 0.003824 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.537913 B = 7320.629037 C = 8407.095756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.621 5.621 3 C 0.071 3.929 4 C 0.567 3.433 5 O -0.532 6.532 6 C -0.160 4.160 7 C -0.069 4.069 8 C -0.175 4.175 9 C 0.161 3.839 10 F -0.091 7.091 11 C -0.066 4.066 12 C 0.150 3.850 13 C -0.118 4.118 14 N -0.420 5.420 15 C -0.058 4.058 16 C 0.193 3.807 17 C -0.460 4.460 18 H 0.090 0.910 19 C 0.034 3.966 20 N -0.722 5.722 21 Si 1.069 2.931 22 H -0.271 1.271 23 H -0.274 1.274 24 H -0.275 1.275 25 N -0.508 5.508 26 C -0.020 4.020 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.311 0.689 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 11.613 -3.864 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.355 5.355 3 C -0.071 4.071 4 C 0.356 3.644 5 O -0.409 6.409 6 C -0.163 4.163 7 C -0.088 4.088 8 C -0.194 4.194 9 C 0.140 3.860 10 F -0.068 7.068 11 C -0.068 4.068 12 C 0.003 3.997 13 C -0.275 4.275 14 N -0.130 5.130 15 C -0.230 4.230 16 C 0.069 3.931 17 C -0.491 4.491 18 H 0.108 0.892 19 C -0.197 4.197 20 N -0.342 5.342 21 Si 0.892 3.108 22 H -0.196 1.196 23 H -0.199 1.199 24 H -0.200 1.200 25 N -0.227 5.227 26 C -0.040 4.040 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.997 12.003 -4.391 15.630 hybrid contribution -1.172 -0.872 0.465 1.533 sum -10.170 11.132 -3.926 15.580 Atomic orbital electron populations 1.21655 0.78867 1.03229 1.01960 1.47611 1.07101 1.06311 1.74492 1.22188 0.98119 0.85005 1.01827 1.18314 0.87100 0.83217 0.75782 1.90788 1.69885 1.31037 1.49141 1.19568 0.92528 0.99518 1.04711 1.21378 0.93034 0.96842 0.97567 1.21041 0.94912 1.00740 1.02685 1.18165 0.78855 0.94095 0.94856 1.91744 1.26643 1.95139 1.93319 1.18780 0.92542 0.95886 0.99614 1.20150 0.91899 0.93168 0.94509 1.22348 0.98857 0.99036 1.07297 1.67654 1.11225 1.21340 1.12823 1.23159 0.89754 1.02088 1.07954 1.19308 0.94832 0.88716 0.90273 1.20639 0.89866 1.20816 1.17737 0.89164 1.27118 1.05567 0.93891 0.93165 1.70198 1.20897 1.28826 1.14285 0.83579 0.72877 0.77424 0.76957 1.19600 1.19911 1.20018 1.69074 1.06630 1.24916 1.22092 1.21115 0.92401 0.95637 0.94807 0.92628 0.91208 0.90303 0.92125 0.90871 0.89977 0.84252 0.84164 0.85157 0.84658 0.87353 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.45 59.84 0.63 1.34 16 2 N -0.62 -6.56 3.27 -190.68 -0.62 -7.18 16 3 C 0.07 0.51 8.87 59.85 0.53 1.04 16 4 C 0.57 8.19 7.35 -12.37 -0.09 8.09 16 5 O -0.53 -9.52 16.45 5.31 0.09 -9.43 16 6 C -0.16 -2.35 5.24 -105.01 -0.55 -2.90 16 7 C -0.07 -0.85 7.57 -39.15 -0.30 -1.14 16 8 C -0.17 -2.47 10.00 -39.62 -0.40 -2.86 16 9 C 0.16 3.06 7.28 -38.92 -0.28 2.78 16 10 F -0.09 -2.04 14.63 2.25 0.03 -2.01 16 11 C -0.07 -1.32 5.88 -104.89 -0.62 -1.94 16 12 C 0.15 3.61 6.74 -82.76 -0.56 3.05 16 13 C -0.12 -2.81 10.61 -16.73 -0.18 -2.99 16 14 N -0.42 -10.57 10.47 -12.05 -0.13 -10.69 16 15 C -0.06 -1.46 10.97 -16.55 -0.18 -1.64 16 16 C 0.19 5.15 6.26 -84.84 -0.53 4.62 16 17 C -0.46 -11.76 9.01 -37.73 -0.34 -12.10 16 18 H 0.09 2.14 7.99 -52.48 -0.42 1.72 16 19 C 0.03 0.83 5.23 -17.34 -0.09 0.74 16 20 N -0.72 -18.88 12.55 55.55 0.70 -18.19 16 21 Si 1.07 20.68 30.02 -169.99 -5.10 15.58 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 25 N -0.51 -13.44 5.86 -7.50 -0.04 -13.48 16 26 C -0.02 -0.34 9.00 -38.84 -0.35 -0.69 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.38 8.07 -51.93 -0.42 -0.03 16 29 H 0.08 0.78 7.36 -51.93 -0.38 0.39 16 30 H 0.06 0.33 6.80 -51.93 -0.35 -0.02 16 31 H 0.07 0.36 8.03 -51.93 -0.42 -0.05 16 32 H 0.08 0.65 5.89 -51.93 -0.31 0.34 16 33 H 0.14 1.19 5.22 -52.48 -0.27 0.92 16 34 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.13 2.74 6.18 -52.48 -0.32 2.42 16 36 H 0.14 3.11 8.06 -52.48 -0.42 2.69 16 37 H 0.31 8.58 6.57 -40.82 -0.27 8.31 16 38 H 0.14 2.47 6.17 -52.49 -0.32 2.14 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -32.22 327.59 -7.00 -39.22 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.55 Total: 5.85 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -3.31 Total: -4.61 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.10 Total: -49.54 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.03 Total: -2.01 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.10 Total: 15.58 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.22 -7.00 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241984615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.950 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds