Wall clock time and date at job start Tue Mar 31 2020 11:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00109 * 2 1 4 4 N 1.34777 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99873 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.46928 * 180.02562 * 5 4 2 7 7 C 1.37864 * 119.94082 * 104.72477 * 6 5 4 8 8 C 1.39684 * 119.87708 * 179.79239 * 7 6 5 9 9 C 1.47878 * 120.11878 * 180.23205 * 8 7 6 10 10 C 1.40454 * 120.79696 * 359.97438 * 9 8 7 11 11 N 1.31580 * 119.09395 * 179.76421 * 10 9 8 12 12 C 1.33658 * 120.82876 * 0.51482 * 11 10 9 13 13 C 1.41050 * 119.13011 * 179.70715 * 12 11 10 14 14 H 1.07994 * 119.99951 * 180.02562 * 13 12 11 15 15 C 1.40134 * 119.99709 * 0.02562 * 13 12 11 16 16 N 1.30660 * 120.00583 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99644 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47120 * 90.00129 * 17 15 13 19 19 H 1.48500 * 109.46670 * 209.99881 * 17 15 13 20 20 H 1.48495 * 109.46891 * 329.99595 * 17 15 13 21 21 N 1.33652 * 121.73780 * 359.73456 * 12 11 10 22 22 C 1.31572 * 120.83796 * 359.97438 * 21 12 11 23 23 C 1.39719 * 119.75642 * 0.50652 * 8 7 6 24 24 C 1.37823 * 119.87813 * 359.72200 * 23 8 7 25 25 C 1.38656 * 119.94142 * 285.00281 * 6 5 4 26 26 F 1.35103 * 119.87421 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47288 * 269.99990 * 1 2 3 28 28 H 1.08997 * 109.47440 * 29.99902 * 1 2 3 29 29 H 1.09004 * 109.47246 * 149.99834 * 1 2 3 30 30 H 0.96995 * 120.00018 * 0.27749 * 4 2 1 31 31 H 1.09000 * 109.47212 * 300.00355 * 5 4 2 32 32 H 1.09001 * 109.46577 * 60.00430 * 5 4 2 33 33 H 1.08005 * 120.05852 * 0.02562 * 7 6 5 34 34 H 1.08002 * 120.45360 * 0.02562 * 10 9 8 35 35 H 0.96999 * 120.00572 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.46001 * 179.97438 * 22 21 12 37 37 H 1.07998 * 120.06515 * 179.70905 * 23 8 7 38 38 H 1.07996 * 119.93967 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5879 0.0001 7 6 4.6635 -3.1357 -1.1554 8 6 5.1327 -4.4513 -1.1527 9 6 5.6912 -5.0426 -2.3878 10 6 5.7580 -4.2963 -3.5758 11 7 6.2655 -4.8541 -4.6540 12 6 6.7043 -6.1164 -4.6303 13 6 7.2361 -6.6807 -5.8086 14 1 7.5943 -7.6995 -5.8054 15 6 7.2997 -5.9192 -6.9833 16 7 6.8659 -4.6868 -6.9873 17 14 8.0033 -6.6668 -8.5439 18 1 6.9136 -7.3141 -9.3177 19 1 8.6276 -5.5994 -9.3661 20 1 9.0281 -7.6810 -8.1885 21 7 6.6520 -6.8582 -3.5198 22 6 6.1626 -6.3657 -2.4022 23 6 5.0673 -5.2085 0.0197 24 6 4.5459 -4.6524 1.1680 25 6 4.0862 -3.3438 1.1608 26 9 3.5756 -2.8037 2.2891 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6959 -2.0072 -0.0032 31 1 4.0089 -0.6538 -0.8905 32 1 4.0095 -0.6527 0.8895 33 1 4.7076 -2.5473 -2.0601 34 1 5.4015 -3.2772 -3.6028 35 1 6.9095 -4.1598 -7.8005 36 1 6.1228 -6.9707 -1.5085 37 1 5.4243 -6.2277 0.0262 38 1 4.4944 -5.2369 2.0746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242829765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:33 Heat of formation + Delta-G solvation = -22.780095 kcal Electronic energy + Delta-G solvation = -24405.099175 eV Core-core repulsion = 20547.502466 eV Total energy + Delta-G solvation = -3857.596709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.68689 -39.81388 -39.35295 -38.29364 -35.09952 -34.13388 -32.24762 -32.11046 -31.48150 -29.84198 -28.89407 -26.19578 -25.82530 -23.39264 -22.85627 -21.50994 -20.70965 -20.48788 -18.20161 -17.52736 -16.95498 -16.67464 -16.29051 -15.82662 -15.50151 -15.36103 -15.27108 -14.81831 -14.72482 -13.77068 -13.61498 -13.47845 -13.29497 -13.05275 -12.91437 -12.83402 -12.69766 -12.31399 -12.10090 -12.07003 -11.87203 -11.52988 -11.44114 -10.98718 -10.70480 -10.48984 -10.10881 -9.81904 -9.42501 -9.39385 -9.19926 -9.01117 -8.85725 -7.56298 -7.49357 -6.83246 -4.96503 1.10231 1.36431 2.44099 2.54622 2.79424 2.89933 2.92296 2.95745 3.24719 3.66429 3.95380 4.44744 4.45720 4.54111 4.74036 4.86622 5.03987 5.14512 5.20618 5.35388 5.44717 5.55059 5.60188 5.63279 5.68357 5.68898 5.74551 5.99122 6.07167 6.26097 6.31238 6.36552 6.46887 6.49932 6.69919 6.85080 7.10468 7.19212 7.39752 7.40025 7.86619 8.10903 8.18930 8.26963 8.84052 9.80804 9.99661 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017635 B = 0.002885 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.411579 B = 9702.900995 C =11009.154637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.551 6.551 4 N -0.723 5.723 5 C 0.165 3.835 6 C -0.128 4.128 7 C -0.104 4.104 8 C 0.036 3.964 9 C -0.338 4.338 10 C 0.185 3.815 11 N -0.508 5.508 12 C 0.376 3.624 13 C -0.366 4.366 14 H 0.099 0.901 15 C 0.057 3.943 16 N -0.690 5.690 17 Si 0.924 3.076 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.257 1.257 21 N -0.592 5.592 22 C 0.192 3.808 23 C -0.116 4.116 24 C -0.136 4.136 25 C 0.062 3.938 26 F -0.147 7.147 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.402 0.598 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.282 0.718 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 2.867 9.314 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.429 6.429 4 N -0.375 5.375 5 C 0.042 3.958 6 C -0.130 4.130 7 C -0.123 4.123 8 C 0.034 3.966 9 C -0.348 4.348 10 C 0.007 3.993 11 N -0.223 5.223 12 C 0.145 3.855 13 C -0.399 4.399 14 H 0.117 0.883 15 C -0.172 4.172 16 N -0.310 5.310 17 Si 0.747 3.253 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.180 1.180 21 N -0.310 5.310 22 C 0.016 3.984 23 C -0.134 4.134 24 C -0.155 4.155 25 C 0.042 3.958 26 F -0.126 7.126 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.237 0.763 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.344 3.379 8.152 11.480 hybrid contribution -0.412 -0.209 0.492 0.675 sum -7.755 3.170 8.644 12.038 Atomic orbital electron populations 1.21874 0.91696 1.04892 1.04691 1.20813 0.90615 0.83385 0.75546 1.90723 1.70856 1.31422 1.49923 1.46157 1.07105 1.08921 1.75306 1.20076 0.79843 0.92678 1.03248 1.19640 1.04385 0.95679 0.93275 1.20976 0.99397 0.95131 0.96752 1.18751 0.93071 0.92135 0.92650 1.19645 1.21133 0.98945 0.95070 1.23062 0.90403 0.97829 0.87991 1.69360 1.14505 1.12063 1.26380 1.19957 0.89452 0.85402 0.90707 1.19592 1.29421 0.99707 0.91131 0.88328 1.26273 0.94788 0.94735 1.01396 1.70103 1.25473 1.06833 1.28583 0.86034 0.80014 0.79827 0.79464 1.18909 1.19655 1.18009 1.68655 1.23468 1.38760 1.00098 1.22691 0.89155 0.91066 0.95483 1.21069 1.00559 1.00295 0.91526 1.20930 1.01309 0.93645 0.99634 1.17444 1.03194 0.92889 0.82300 1.91442 1.85211 1.86283 1.49648 0.88923 0.88906 0.90131 0.76315 0.90145 0.90588 0.85117 0.85094 0.90692 0.84962 0.85232 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.30 36.00 0.37 -0.91 16 2 C 0.51 6.11 7.94 -10.99 -0.09 6.02 16 3 O -0.55 -9.04 17.10 5.55 0.09 -8.95 16 4 N -0.72 -8.12 5.55 -61.47 -0.34 -8.46 16 5 C 0.16 2.10 5.48 -5.19 -0.03 2.07 16 6 C -0.13 -1.73 5.25 -104.61 -0.55 -2.27 16 7 C -0.10 -1.53 9.07 -39.18 -0.36 -1.89 16 8 C 0.04 0.59 5.88 -104.86 -0.62 -0.03 16 9 C -0.34 -6.75 5.94 -104.28 -0.62 -7.37 16 10 C 0.19 4.07 10.70 -16.83 -0.18 3.89 16 11 N -0.51 -13.04 7.83 -12.41 -0.10 -13.14 16 12 C 0.38 9.88 7.35 -158.16 -1.16 8.72 16 13 C -0.37 -9.27 9.35 -37.80 -0.35 -9.62 16 14 H 0.10 2.37 7.85 -52.49 -0.41 1.96 16 15 C 0.06 1.34 5.50 -17.34 -0.10 1.24 16 16 N -0.69 -16.75 11.40 55.56 0.63 -16.12 16 17 Si 0.92 16.94 29.56 -169.99 -5.02 11.92 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 21 N -0.59 -14.56 10.33 -12.41 -0.13 -14.69 16 22 C 0.19 4.02 10.70 -16.82 -0.18 3.84 16 23 C -0.12 -1.64 9.45 -39.18 -0.37 -2.01 16 24 C -0.14 -1.76 10.01 -39.56 -0.40 -2.15 16 25 C 0.06 0.83 7.25 -39.26 -0.28 0.55 16 26 F -0.15 -2.00 16.74 2.25 0.04 -1.97 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.40 3.75 8.46 -40.82 -0.35 3.41 16 31 H 0.08 1.05 7.95 -51.93 -0.41 0.63 16 32 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.13 1.86 6.23 -52.48 -0.33 1.53 16 34 H 0.13 2.50 6.33 -52.49 -0.33 2.17 16 35 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 36 H 0.13 2.27 6.33 -52.49 -0.33 1.94 16 37 H 0.13 1.65 6.29 -52.49 -0.33 1.32 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -30.24 338.28 -8.37 -38.61 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.74 Total: 7.60 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -4.91 Total: 0.08 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.07 Total: -52.40 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.02 Total: 11.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.24 -8.37 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242829765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.834 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds