Wall clock time and date at job start Tue Mar 31 2020 11:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00109 * 2 1 4 4 N 1.34777 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99873 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.46928 * 180.02562 * 5 4 2 7 7 C 1.37864 * 119.94082 * 104.72477 * 6 5 4 8 8 C 1.39684 * 119.87708 * 179.79239 * 7 6 5 9 9 C 1.47878 * 120.11878 * 180.23205 * 8 7 6 10 10 C 1.40454 * 120.79696 * 359.97438 * 9 8 7 11 11 N 1.31580 * 119.09395 * 179.76421 * 10 9 8 12 12 C 1.33658 * 120.82876 * 0.51482 * 11 10 9 13 13 C 1.41050 * 119.13011 * 179.70715 * 12 11 10 14 14 H 1.07994 * 119.99951 * 180.02562 * 13 12 11 15 15 C 1.40134 * 119.99709 * 0.02562 * 13 12 11 16 16 N 1.30660 * 120.00583 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99644 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47120 * 90.00129 * 17 15 13 19 19 H 1.48500 * 109.46670 * 209.99881 * 17 15 13 20 20 H 1.48495 * 109.46891 * 329.99595 * 17 15 13 21 21 N 1.33652 * 121.73780 * 359.73456 * 12 11 10 22 22 C 1.31572 * 120.83796 * 359.97438 * 21 12 11 23 23 C 1.39719 * 119.75642 * 0.50652 * 8 7 6 24 24 C 1.37823 * 119.87813 * 359.72200 * 23 8 7 25 25 C 1.38656 * 119.94142 * 285.00281 * 6 5 4 26 26 F 1.35103 * 119.87421 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47288 * 269.99990 * 1 2 3 28 28 H 1.08997 * 109.47440 * 29.99902 * 1 2 3 29 29 H 1.09004 * 109.47246 * 149.99834 * 1 2 3 30 30 H 0.96995 * 120.00018 * 0.27749 * 4 2 1 31 31 H 1.09000 * 109.47212 * 300.00355 * 5 4 2 32 32 H 1.09001 * 109.46577 * 60.00430 * 5 4 2 33 33 H 1.08005 * 120.05852 * 0.02562 * 7 6 5 34 34 H 1.08002 * 120.45360 * 0.02562 * 10 9 8 35 35 H 0.96999 * 120.00572 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.46001 * 179.97438 * 22 21 12 37 37 H 1.07998 * 120.06515 * 179.70905 * 23 8 7 38 38 H 1.07996 * 119.93967 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5879 0.0001 7 6 4.6635 -3.1357 -1.1554 8 6 5.1327 -4.4513 -1.1527 9 6 5.6912 -5.0426 -2.3878 10 6 5.7580 -4.2963 -3.5758 11 7 6.2655 -4.8541 -4.6540 12 6 6.7043 -6.1164 -4.6303 13 6 7.2361 -6.6807 -5.8086 14 1 7.5943 -7.6995 -5.8054 15 6 7.2997 -5.9192 -6.9833 16 7 6.8659 -4.6868 -6.9873 17 14 8.0033 -6.6668 -8.5439 18 1 6.9136 -7.3141 -9.3177 19 1 8.6276 -5.5994 -9.3661 20 1 9.0281 -7.6810 -8.1885 21 7 6.6520 -6.8582 -3.5198 22 6 6.1626 -6.3657 -2.4022 23 6 5.0673 -5.2085 0.0197 24 6 4.5459 -4.6524 1.1680 25 6 4.0862 -3.3438 1.1608 26 9 3.5756 -2.8037 2.2891 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6959 -2.0072 -0.0032 31 1 4.0089 -0.6538 -0.8905 32 1 4.0095 -0.6527 0.8895 33 1 4.7076 -2.5473 -2.0601 34 1 5.4015 -3.2772 -3.6028 35 1 6.9095 -4.1598 -7.8005 36 1 6.1228 -6.9707 -1.5085 37 1 5.4243 -6.2277 0.0262 38 1 4.4944 -5.2369 2.0746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242829765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:32 Heat of formation + Delta-G solvation = -41.514301 kcal Electronic energy + Delta-G solvation = -24405.911551 eV Core-core repulsion = 20547.502466 eV Total energy + Delta-G solvation = -3858.409085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.82666 -41.13151 -40.65061 -39.61939 -36.26070 -35.73582 -33.94284 -33.48752 -32.70302 -30.78483 -30.29695 -27.76449 -26.93129 -24.89006 -24.40593 -22.87136 -21.83509 -21.67458 -19.88506 -18.67309 -18.16224 -17.95727 -17.36538 -17.27215 -16.89350 -16.52718 -16.35687 -16.20335 -16.09685 -15.04645 -15.03176 -14.66105 -14.56839 -14.36510 -14.21836 -13.98715 -13.58865 -13.50737 -13.27857 -13.21878 -13.11050 -12.91355 -12.88292 -12.71137 -11.97730 -11.86910 -11.42958 -11.22815 -11.13065 -11.05996 -10.49814 -10.21736 -9.97256 -9.32426 -8.97522 -8.52586 -6.75470 -0.20605 0.21980 0.91539 1.06926 1.39504 1.50860 1.55906 1.61279 2.16149 2.27115 2.61166 2.91179 3.29846 3.46080 3.75925 3.86848 3.89362 3.93441 3.95054 4.01260 4.29433 4.33120 4.36004 4.45877 4.49272 4.61515 4.66872 4.77440 4.97117 5.06848 5.08742 5.11245 5.18271 5.26537 5.27520 5.35156 5.71707 5.76307 5.96008 6.06945 6.43354 6.50953 6.51470 7.11487 7.19733 8.13153 8.26352 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017635 B = 0.002885 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.411579 B = 9702.900995 C =11009.154637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.602 6.602 4 N -0.716 5.716 5 C 0.166 3.834 6 C -0.125 4.125 7 C -0.098 4.098 8 C 0.008 3.992 9 C -0.316 4.316 10 C 0.163 3.837 11 N -0.542 5.542 12 C 0.352 3.648 13 C -0.413 4.413 14 H 0.095 0.905 15 C 0.020 3.980 16 N -0.732 5.732 17 Si 1.001 2.999 18 H -0.258 1.258 19 H -0.262 1.262 20 H -0.255 1.255 21 N -0.619 5.619 22 C 0.178 3.822 23 C -0.103 4.103 24 C -0.130 4.130 25 C 0.074 3.926 26 F -0.144 7.144 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.414 0.586 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.151 0.849 35 H 0.288 0.712 36 H 0.172 0.828 37 H 0.148 0.852 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 2.509 11.240 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.483 6.483 4 N -0.368 5.368 5 C 0.043 3.957 6 C -0.126 4.126 7 C -0.117 4.117 8 C 0.006 3.994 9 C -0.326 4.326 10 C -0.012 4.012 11 N -0.258 5.258 12 C 0.119 3.881 13 C -0.447 4.447 14 H 0.113 0.887 15 C -0.205 4.205 16 N -0.353 5.353 17 Si 0.819 3.181 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.178 1.178 21 N -0.338 5.338 22 C 0.004 3.996 23 C -0.121 4.121 24 C -0.148 4.148 25 C 0.055 3.945 26 F -0.122 7.122 27 H 0.130 0.870 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.250 0.750 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.168 0.832 35 H 0.100 0.900 36 H 0.188 0.812 37 H 0.165 0.835 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.750 3.021 10.159 13.744 hybrid contribution -0.161 0.036 0.327 0.366 sum -8.910 3.057 10.486 14.096 Atomic orbital electron populations 1.21899 0.87822 1.06227 1.06302 1.21669 0.92438 0.82524 0.74076 1.90703 1.72215 1.33132 1.52288 1.46126 1.06454 1.09539 1.74704 1.19953 0.80999 0.92091 1.02691 1.19583 1.04222 0.95859 0.92937 1.20987 0.98756 0.94645 0.97302 1.18645 0.95433 0.93152 0.92163 1.19897 1.18622 0.98325 0.95720 1.23520 0.90446 0.98950 0.88308 1.69318 1.16038 1.12324 1.28162 1.20330 0.90132 0.86017 0.91667 1.19838 1.32154 1.00232 0.92429 0.88691 1.27157 0.94454 0.94866 1.04018 1.70164 1.27093 1.08197 1.29831 0.84923 0.79200 0.78978 0.74971 1.18258 1.18622 1.17809 1.68671 1.24933 1.39319 1.00872 1.23345 0.88473 0.92012 0.95762 1.21265 0.99228 1.00809 0.90828 1.21195 0.99982 0.93387 1.00274 1.17619 1.01780 0.93094 0.82056 1.91465 1.85013 1.86303 1.49459 0.87005 0.88708 0.87675 0.74966 0.90771 0.91273 0.85173 0.83185 0.90043 0.81161 0.83480 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.30 71.23 0.73 -1.24 16 2 C 0.50 11.30 7.94 87.66 0.70 12.00 16 3 O -0.60 -19.54 17.10 -3.04 -0.05 -19.59 16 4 N -0.72 -14.67 5.55 -466.78 -2.59 -17.26 16 5 C 0.17 4.01 5.48 85.63 0.47 4.48 16 6 C -0.12 -3.05 5.25 -19.85 -0.10 -3.16 16 7 C -0.10 -2.73 9.07 22.53 0.20 -2.52 16 8 C 0.01 0.24 5.88 -20.02 -0.12 0.13 16 9 C -0.32 -12.48 5.94 -19.64 -0.12 -12.59 16 10 C 0.16 7.32 10.70 85.27 0.91 8.23 16 11 N -0.54 -29.01 7.83 -193.17 -1.51 -30.52 16 12 C 0.35 19.34 7.35 134.89 0.99 20.33 16 13 C -0.41 -22.00 9.35 23.42 0.22 -21.78 16 14 H 0.10 4.85 7.85 -2.91 -0.02 4.83 16 15 C 0.02 0.98 5.50 85.33 0.47 1.45 16 16 N -0.73 -37.05 11.40 21.85 0.25 -36.80 16 17 Si 1.00 35.63 29.56 68.60 2.03 37.66 16 18 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 19 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 20 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 21 N -0.62 -31.24 10.33 -193.17 -2.00 -33.24 16 22 C 0.18 7.35 10.70 85.28 0.91 8.26 16 23 C -0.10 -2.55 9.45 22.53 0.21 -2.33 16 24 C -0.13 -2.77 10.01 22.28 0.22 -2.55 16 25 C 0.07 1.74 7.25 22.48 0.16 1.90 16 26 F -0.14 -3.39 16.74 44.97 0.75 -2.64 16 27 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.41 6.55 8.46 -92.71 -0.78 5.76 16 31 H 0.07 1.89 7.95 -2.39 -0.02 1.87 16 32 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 33 H 0.13 3.61 6.23 -2.91 -0.02 3.59 16 34 H 0.15 5.86 6.33 -2.91 -0.02 5.85 16 35 H 0.29 12.95 8.29 -92.71 -0.77 12.18 16 36 H 0.17 5.47 6.33 -2.91 -0.02 5.45 16 37 H 0.15 3.13 6.29 -2.91 -0.02 3.11 16 38 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -69.47 338.28 3.10 -66.37 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.35 Total: 25.41 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.87 Total: 10.59 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -5.85 Total: -117.82 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.75 Total: -2.64 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Total: -69.47 3.10 -66.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242829765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.859 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds