Wall clock time and date at job start Tue Mar 31 2020 11:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00178 * 2 1 4 4 C 1.34776 * 119.99854 * 180.02562 * 2 1 3 5 5 O 1.21563 * 120.00237 * 357.03333 * 4 2 1 6 6 C 1.47731 * 120.00031 * 177.03371 * 4 2 1 7 7 C 1.39317 * 120.08955 * 332.04259 * 6 4 2 8 8 C 1.39399 * 119.72034 * 180.20283 * 7 6 4 9 9 C 1.47755 * 120.04645 * 179.82171 * 8 7 6 10 10 N 1.32875 * 120.25491 * 44.28981 * 9 8 7 11 11 C 1.31997 * 120.07823 * 179.97438 * 10 9 8 12 12 C 1.39202 * 120.59470 * 0.02562 * 11 10 9 13 13 N 1.31609 * 120.50231 * 359.97438 * 12 11 10 14 14 C 1.33968 * 119.90295 * 0.02562 * 13 12 11 15 15 C 1.40785 * 120.28839 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00260 * 189.01508 * 15 14 13 17 17 C 1.40169 * 119.99613 * 9.01936 * 15 14 13 18 18 N 1.30689 * 119.99996 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99793 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47057 * 60.00149 * 19 17 15 21 21 H 1.48498 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47491 * 299.99914 * 19 17 15 23 23 C 1.39907 * 119.90403 * 359.54194 * 8 7 6 24 24 C 1.37832 * 120.18826 * 0.27802 * 23 8 7 25 25 C 1.38531 * 120.27960 * 359.94927 * 24 23 8 26 26 F 1.35103 * 119.95496 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46605 * 299.99291 * 1 2 3 29 29 H 1.08992 * 109.47752 * 59.99526 * 1 2 3 30 30 H 1.08994 * 109.46812 * 276.15953 * 3 2 1 31 31 H 1.08996 * 109.46624 * 36.15452 * 3 2 1 32 32 H 1.08999 * 109.46793 * 156.15459 * 3 2 1 33 33 H 1.08003 * 120.14632 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.70450 * 179.97438 * 11 10 9 35 35 H 1.07991 * 119.74857 * 179.72481 * 12 11 10 36 36 H 0.96999 * 119.99863 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.90907 * 180.25248 * 23 8 7 38 38 H 1.07996 * 119.85767 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5323 -2.2193 0.0535 6 6 3.6147 -1.1681 -0.0667 7 6 4.2865 -0.1185 -0.6895 8 6 5.6791 -0.1292 -0.7513 9 6 6.3988 0.9783 -1.4135 10 7 6.0422 2.2383 -1.1876 11 6 6.6879 3.2250 -1.7807 12 6 7.7453 2.9604 -2.6466 13 7 8.1179 1.7213 -2.8869 14 6 7.4765 0.7044 -2.2958 15 6 7.8686 -0.6242 -2.5466 16 1 7.2630 -1.4430 -2.1872 17 6 9.0452 -0.8843 -3.2627 18 7 9.7778 0.1065 -3.6979 19 14 9.5659 -2.6472 -3.5949 20 1 8.5092 -3.3362 -4.3786 21 1 10.8358 -2.6516 -4.3646 22 1 9.7669 -3.3555 -2.3053 23 6 6.3945 -1.1873 -0.1802 24 6 5.7260 -2.2219 0.4383 25 6 4.3421 -2.2214 0.5000 26 9 3.6936 -3.2386 1.1083 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8898 30 1 2.2837 1.6385 -1.0217 31 1 1.6606 1.9982 0.6063 32 1 3.1932 1.1133 0.4155 33 1 3.7308 0.6988 -1.1251 34 1 6.3927 4.2468 -1.5931 35 1 8.2612 3.7780 -3.1279 36 1 10.5922 -0.0735 -4.1931 37 1 7.4735 -1.1936 -0.2245 38 1 6.2836 -3.0362 0.8769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243285910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:44 Heat of formation + Delta-G solvation = 8.576079 kcal Electronic energy + Delta-G solvation = -25811.923763 eV Core-core repulsion = 21955.686760 eV Total energy + Delta-G solvation = -3856.237003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.48451 -40.15175 -39.23332 -37.67561 -35.52775 -34.34258 -32.57652 -31.70380 -31.17799 -28.74300 -27.89729 -26.44558 -26.19383 -23.50629 -23.01091 -22.01933 -21.28894 -19.38687 -17.91250 -17.16130 -17.07142 -16.48110 -16.18578 -15.79560 -15.42993 -15.18538 -15.06320 -14.92151 -14.35420 -14.03956 -13.46928 -13.35991 -13.14884 -13.02091 -12.67940 -12.62242 -12.49687 -12.25671 -12.03829 -11.70659 -11.67056 -11.50460 -11.46872 -10.78665 -10.72289 -10.45728 -10.04789 -9.77360 -9.70400 -9.35829 -8.73613 -8.67972 -8.48808 -7.76727 -7.54547 -6.76833 -4.91527 1.09474 1.44892 2.33211 2.74245 2.90713 2.92715 2.97825 3.02380 3.11915 3.67711 4.02439 4.41758 4.54470 4.57493 5.02076 5.13541 5.17820 5.29270 5.32003 5.44830 5.57115 5.62292 5.67840 5.75805 5.80541 5.82413 5.97134 6.09482 6.18919 6.32722 6.37296 6.47539 6.52178 6.69213 6.77313 6.81953 7.06363 7.20465 7.32935 7.43885 7.80312 8.14858 8.22995 8.40713 8.98157 9.59486 9.87184 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.004930 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.311907 B = 5678.170247 C = 7211.952952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.618 5.618 3 C 0.065 3.935 4 C 0.565 3.435 5 O -0.535 6.535 6 C -0.181 4.181 7 C -0.066 4.066 8 C 0.013 3.987 9 C -0.039 4.039 10 N -0.409 5.409 11 C -0.115 4.115 12 C 0.092 3.908 13 N -0.451 5.451 14 C 0.223 3.777 15 C -0.403 4.403 16 H 0.100 0.900 17 C 0.066 3.934 18 N -0.701 5.701 19 Si 0.909 3.091 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.050 4.050 24 C -0.166 4.166 25 C 0.133 3.867 26 F -0.130 7.130 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.282 0.718 37 H 0.149 0.851 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 0.956 4.421 8.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.352 5.352 3 C -0.078 4.078 4 C 0.355 3.645 5 O -0.412 6.412 6 C -0.185 4.185 7 C -0.085 4.085 8 C 0.011 3.989 9 C -0.185 4.185 10 N -0.122 5.122 11 C -0.277 4.277 12 C -0.080 4.080 13 N -0.167 5.167 14 C 0.099 3.901 15 C -0.433 4.433 16 H 0.118 0.882 17 C -0.163 4.163 18 N -0.320 5.320 19 Si 0.732 3.268 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.069 4.069 24 C -0.185 4.185 25 C 0.112 3.888 26 F -0.109 7.109 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.166 0.834 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.766 0.413 4.322 8.039 hybrid contribution 0.254 -0.517 -0.226 0.619 sum -6.511 -0.104 4.096 7.693 Atomic orbital electron populations 1.21656 0.79119 1.04119 1.01145 1.47560 1.07027 1.06435 1.74156 1.22436 0.98605 0.84597 1.02114 1.18231 0.87034 0.83388 0.75857 1.90763 1.69724 1.30832 1.49923 1.19663 0.92753 0.97892 1.08160 1.21914 0.94202 0.95984 0.96425 1.18320 0.91432 0.93613 0.95541 1.19931 1.02691 0.89908 1.05976 1.67638 1.25848 0.99451 1.19218 1.22561 1.01784 0.97163 1.06196 1.23573 0.93885 0.96086 0.94468 1.69546 1.26933 0.97557 1.22707 1.19184 0.88241 0.93803 0.88919 1.19872 1.04737 0.91950 1.26746 0.88241 1.26213 0.96259 0.99654 0.94165 1.70014 1.09322 1.33090 1.19574 0.86309 0.78978 0.81417 0.80102 1.18349 1.19792 1.18231 1.21571 1.01574 0.91503 0.92225 1.20977 0.91564 1.01478 1.04436 1.17658 0.90054 0.85122 0.95979 1.91510 1.81819 1.57198 1.80337 0.89548 0.92300 0.92238 0.91791 0.91424 0.88559 0.83460 0.85224 0.85080 0.90649 0.83379 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.71 59.85 0.64 1.56 16 2 N -0.62 -8.74 3.27 -190.69 -0.62 -9.36 16 3 C 0.06 0.78 8.78 59.85 0.53 1.31 16 4 C 0.57 9.97 7.41 -12.38 -0.09 9.88 16 5 O -0.53 -10.87 15.15 5.31 0.08 -10.79 16 6 C -0.18 -3.21 5.45 -104.96 -0.57 -3.78 16 7 C -0.07 -1.17 7.10 -38.75 -0.28 -1.44 16 8 C 0.01 0.25 5.27 -104.95 -0.55 -0.30 16 9 C -0.04 -0.87 6.41 -82.11 -0.53 -1.40 16 10 N -0.41 -8.82 10.30 -8.97 -0.09 -8.91 16 11 C -0.11 -2.34 11.22 -17.12 -0.19 -2.54 16 12 C 0.09 1.97 11.22 -17.29 -0.19 1.78 16 13 N -0.45 -11.19 8.10 -10.72 -0.09 -11.28 16 14 C 0.22 5.43 6.51 -84.55 -0.55 4.88 16 15 C -0.40 -9.40 7.50 -37.90 -0.28 -9.69 16 16 H 0.10 2.16 5.33 -52.49 -0.28 1.88 16 17 C 0.07 1.47 5.49 -17.31 -0.10 1.38 16 18 N -0.70 -16.61 11.53 55.56 0.64 -15.97 16 19 Si 0.91 16.63 29.56 -169.99 -5.03 11.61 16 20 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 21 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 22 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 23 C -0.05 -0.89 7.52 -39.11 -0.29 -1.18 16 24 C -0.17 -2.69 10.00 -39.62 -0.40 -3.09 16 25 C 0.13 2.36 7.25 -38.82 -0.28 2.08 16 26 F -0.13 -2.42 15.91 2.25 0.04 -2.38 16 27 H 0.09 1.08 6.90 -51.93 -0.36 0.72 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 31 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 32 H 0.10 1.31 5.05 -51.93 -0.26 1.05 16 33 H 0.15 2.46 4.69 -52.48 -0.25 2.21 16 34 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.28 6.04 8.29 -40.82 -0.34 5.70 16 37 H 0.15 2.65 6.75 -52.49 -0.35 2.29 16 38 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -29.05 325.78 -6.85 -35.90 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.55 Total: 6.84 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -3.14 Total: -0.57 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.16 Total: -45.52 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.05 -6.85 -35.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243285910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.476 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds