Wall clock time and date at job start Tue Mar 31 2020 11:28:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46504 * 120.00178 * 2 1
4 4 C 1.34776 * 119.99854 * 180.02562 * 2 1 3
5 5 O 1.21563 * 120.00237 * 357.03333 * 4 2 1
6 6 C 1.47731 * 120.00031 * 177.03371 * 4 2 1
7 7 C 1.39317 * 120.08955 * 332.04259 * 6 4 2
8 8 C 1.39399 * 119.72034 * 180.20283 * 7 6 4
9 9 C 1.47755 * 120.04645 * 179.82171 * 8 7 6
10 10 N 1.32875 * 120.25491 * 44.28981 * 9 8 7
11 11 C 1.31997 * 120.07823 * 179.97438 * 10 9 8
12 12 C 1.39202 * 120.59470 * 0.02562 * 11 10 9
13 13 N 1.31609 * 120.50231 * 359.97438 * 12 11 10
14 14 C 1.33968 * 119.90295 * 0.02562 * 13 12 11
15 15 C 1.40785 * 120.28839 * 180.02562 * 14 13 12
16 16 H 1.07994 * 120.00260 * 189.01508 * 15 14 13
17 17 C 1.40169 * 119.99613 * 9.01936 * 15 14 13
18 18 N 1.30689 * 119.99996 * 359.97438 * 17 15 14
19 19 Si 1.86796 * 119.99793 * 179.97438 * 17 15 14
20 20 H 1.48504 * 109.47057 * 60.00149 * 19 17 15
21 21 H 1.48498 * 109.47055 * 180.02562 * 19 17 15
22 22 H 1.48497 * 109.47491 * 299.99914 * 19 17 15
23 23 C 1.39907 * 119.90403 * 359.54194 * 8 7 6
24 24 C 1.37832 * 120.18826 * 0.27802 * 23 8 7
25 25 C 1.38531 * 120.27960 * 359.94927 * 24 23 8
26 26 F 1.35103 * 119.95496 * 180.02562 * 25 24 23
27 27 H 1.09003 * 109.47200 * 180.02562 * 1 2 3
28 28 H 1.09006 * 109.46605 * 299.99291 * 1 2 3
29 29 H 1.08992 * 109.47752 * 59.99526 * 1 2 3
30 30 H 1.08994 * 109.46812 * 276.15953 * 3 2 1
31 31 H 1.08996 * 109.46624 * 36.15452 * 3 2 1
32 32 H 1.08999 * 109.46793 * 156.15459 * 3 2 1
33 33 H 1.08003 * 120.14632 * 0.02562 * 7 6 4
34 34 H 1.08001 * 119.70450 * 179.97438 * 11 10 9
35 35 H 1.07991 * 119.74857 * 179.72481 * 12 11 10
36 36 H 0.96999 * 119.99863 * 179.97438 * 18 17 15
37 37 H 1.07998 * 119.90907 * 180.25248 * 23 8 7
38 38 H 1.07996 * 119.85767 * 179.97438 * 24 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1388 -1.1672 -0.0005
5 8 1.5323 -2.2193 0.0535
6 6 3.6147 -1.1681 -0.0667
7 6 4.2865 -0.1185 -0.6895
8 6 5.6791 -0.1292 -0.7513
9 6 6.3988 0.9783 -1.4135
10 7 6.0422 2.2383 -1.1876
11 6 6.6879 3.2250 -1.7807
12 6 7.7453 2.9604 -2.6466
13 7 8.1179 1.7213 -2.8869
14 6 7.4765 0.7044 -2.2958
15 6 7.8686 -0.6242 -2.5466
16 1 7.2630 -1.4430 -2.1872
17 6 9.0452 -0.8843 -3.2627
18 7 9.7778 0.1065 -3.6979
19 14 9.5659 -2.6472 -3.5949
20 1 8.5092 -3.3362 -4.3786
21 1 10.8358 -2.6516 -4.3646
22 1 9.7669 -3.3555 -2.3053
23 6 6.3945 -1.1873 -0.1802
24 6 5.7260 -2.2219 0.4383
25 6 4.3421 -2.2214 0.5000
26 9 3.6936 -3.2386 1.1083
27 1 -0.3634 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8901
29 1 -0.3634 0.5138 -0.8898
30 1 2.2837 1.6385 -1.0217
31 1 1.6606 1.9982 0.6063
32 1 3.1932 1.1133 0.4155
33 1 3.7308 0.6988 -1.1251
34 1 6.3927 4.2468 -1.5931
35 1 8.2612 3.7780 -3.1279
36 1 10.5922 -0.0735 -4.1931
37 1 7.4735 -1.1936 -0.2245
38 1 6.2836 -3.0362 0.8769
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001243285910.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:43
Heat of formation + Delta-G solvation = -8.449781 kcal
Electronic energy + Delta-G solvation = -25812.662060 eV
Core-core repulsion = 21955.686760 eV
Total energy + Delta-G solvation = -3856.975300 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.112 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-49.91506 -41.51447 -40.80467 -39.11091 -36.75106 -36.00336 -34.21524 -33.20369
-32.61043 -30.29265 -28.92141 -28.00856 -27.45420 -25.06287 -24.37804 -23.65089
-22.71259 -20.72810 -19.58986 -18.50371 -18.43301 -17.99153 -17.59417 -17.14364
-16.84063 -16.71751 -16.45365 -16.27115 -15.88505 -15.30043 -14.95052 -14.77521
-14.60646 -14.26976 -14.13778 -14.00719 -13.64965 -13.39167 -13.25023 -13.23557
-13.07369 -12.97999 -12.75883 -12.28202 -12.07719 -12.00735 -11.67633 -11.47927
-11.09870 -11.00228 -10.11322 -10.07202 -9.76967 -9.42216 -9.15019 -8.42404
-6.63332 -0.32616 0.03154 0.71562 1.12665 1.41834 1.52392 1.54776
1.65579 1.92338 2.16787 2.60488 2.77075 3.16315 3.30491 3.61987
3.72207 3.81470 4.11617 4.18456 4.20546 4.27754 4.44262 4.45242
4.48789 4.57323 4.68702 4.76780 4.84295 4.87392 4.89503 4.93438
5.05675 5.09416 5.17378 5.26112 5.41251 5.59252 5.78175 5.81759
6.11229 6.12734 6.46965 6.70430 6.94610 7.30369 7.90435 8.25234
Molecular weight = 315.11amu
Principal moments of inertia in cm(-1)
A = 0.013815 B = 0.004930 C = 0.003882
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2026.311907 B = 5678.170247 C = 7211.952952
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.611 5.611
3 C 0.063 3.937
4 C 0.557 3.443
5 O -0.571 6.571
6 C -0.186 4.186
7 C -0.054 4.054
8 C -0.009 4.009
9 C -0.045 4.045
10 N -0.416 5.416
11 C -0.112 4.112
12 C 0.078 3.922
13 N -0.488 5.488
14 C 0.194 3.806
15 C -0.426 4.426
16 H 0.107 0.893
17 C 0.029 3.971
18 N -0.739 5.739
19 Si 0.975 3.025
20 H -0.262 1.262
21 H -0.268 1.268
22 H -0.247 1.247
23 C -0.051 4.051
24 C -0.150 4.150
25 C 0.123 3.877
26 F -0.135 7.135
27 H 0.069 0.931
28 H 0.085 0.915
29 H 0.082 0.918
30 H 0.070 0.930
31 H 0.100 0.900
32 H 0.080 0.920
33 H 0.157 0.843
34 H 0.166 0.834
35 H 0.158 0.842
36 H 0.287 0.713
37 H 0.146 0.854
38 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.390 1.166 4.990 8.993
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.343 5.343
3 C -0.079 4.079
4 C 0.346 3.654
5 O -0.452 6.452
6 C -0.189 4.189
7 C -0.074 4.074
8 C -0.010 4.010
9 C -0.191 4.191
10 N -0.128 5.128
11 C -0.273 4.273
12 C -0.092 4.092
13 N -0.205 5.205
14 C 0.070 3.930
15 C -0.456 4.456
16 H 0.125 0.875
17 C -0.196 4.196
18 N -0.359 5.359
19 Si 0.795 3.205
20 H -0.186 1.186
21 H -0.192 1.192
22 H -0.170 1.170
23 C -0.070 4.070
24 C -0.169 4.169
25 C 0.102 3.898
26 F -0.114 7.114
27 H 0.088 0.912
28 H 0.104 0.896
29 H 0.100 0.900
30 H 0.088 0.912
31 H 0.118 0.882
32 H 0.098 0.902
33 H 0.174 0.826
34 H 0.183 0.817
35 H 0.175 0.825
36 H 0.098 0.902
37 H 0.164 0.836
38 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges -7.542 0.683 4.904 9.022
hybrid contribution 0.383 -0.420 -0.350 0.668
sum -7.159 0.263 4.554 8.489
Atomic orbital electron populations
1.21887 0.77172 1.03810 1.03570 1.47709 1.08361 1.06039 1.72218
1.22521 0.98139 0.84192 1.03035 1.18296 0.86971 0.84005 0.76099
1.90740 1.70185 1.32193 1.52076 1.19792 0.93264 0.97870 1.08018
1.21895 0.93466 0.96103 0.95890 1.18366 0.92167 0.93728 0.96785
1.20215 1.02396 0.90884 1.05583 1.67736 1.26171 0.99464 1.19466
1.23135 1.00803 0.98531 1.04876 1.24073 0.94418 0.95940 0.94813
1.69492 1.28209 0.98785 1.24057 1.19592 0.89251 0.94402 0.89772
1.20146 1.05620 0.92038 1.27792 0.87489 1.27010 0.95816 1.03345
0.93401 1.70091 1.10024 1.35166 1.20663 0.85330 0.78439 0.76515
0.80259 1.18645 1.19221 1.17014 1.21562 1.01479 0.91535 0.92399
1.21170 0.91019 1.01512 1.03181 1.17905 0.90687 0.85071 0.96092
1.91497 1.82023 1.57406 1.80451 0.91242 0.89644 0.89952 0.91160
0.88168 0.90192 0.82625 0.81703 0.82456 0.90202 0.83621 0.81393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.54 10.71 127.77 1.37 2.91 16
2 N -0.61 -16.18 3.27 -875.50 -2.87 -19.04 16
3 C 0.06 1.37 8.78 127.77 1.12 2.49 16
4 C 0.56 19.26 7.41 86.75 0.64 19.90 16
5 O -0.57 -23.16 15.15 -3.91 -0.06 -23.22 16
6 C -0.19 -6.47 5.45 -20.08 -0.11 -6.58 16
7 C -0.05 -1.89 7.10 22.81 0.16 -1.73 16
8 C -0.01 -0.34 5.27 -20.08 -0.11 -0.45 16
9 C -0.05 -2.03 6.41 42.42 0.27 -1.76 16
10 N -0.42 -17.59 10.30 -182.31 -1.88 -19.47 16
11 C -0.11 -4.40 11.22 84.90 0.95 -3.45 16
12 C 0.08 3.32 11.22 84.96 0.95 4.27 16
13 N -0.49 -24.57 8.10 -187.84 -1.52 -26.09 16
14 C 0.19 9.61 6.51 40.36 0.26 9.87 16
15 C -0.43 -20.12 7.50 23.36 0.18 -19.95 16
16 H 0.11 4.69 5.33 -2.91 -0.02 4.67 16
17 C 0.03 1.32 5.49 85.33 0.47 1.79 16
18 N -0.74 -35.66 11.53 21.86 0.25 -35.41 16
19 Si 0.97 33.84 29.56 68.60 2.03 35.87 16
20 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16
21 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16
22 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16
23 C -0.05 -1.78 7.52 22.58 0.17 -1.61 16
24 C -0.15 -4.67 10.00 22.24 0.22 -4.45 16
25 C 0.12 4.27 7.25 22.76 0.17 4.43 16
26 F -0.14 -4.93 15.91 44.97 0.72 -4.21 16
27 H 0.07 1.66 6.90 -2.39 -0.02 1.65 16
28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16
29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
30 H 0.07 1.48 7.22 -2.39 -0.02 1.46 16
31 H 0.10 1.56 8.12 -2.39 -0.02 1.54 16
32 H 0.08 2.06 5.05 -2.39 -0.01 2.04 16
33 H 0.16 5.05 4.69 -2.91 -0.01 5.04 16
34 H 0.17 5.19 8.06 -2.91 -0.02 5.17 16
35 H 0.16 5.59 8.06 -2.92 -0.02 5.57 16
36 H 0.29 12.51 8.29 -92.71 -0.77 11.74 16
37 H 0.15 5.20 6.75 -2.91 -0.02 5.18 16
38 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16
Total: -1.00 -63.71 325.78 4.52 -59.19
By element:
Atomic # 1 Polarization: 25.56 SS G_CDS: 1.13 Total: 26.69 kcal
Atomic # 6 Polarization: -1.04 SS G_CDS: 6.72 Total: 5.69 kcal
Atomic # 7 Polarization: -94.00 SS G_CDS: -6.01 Total: -100.01 kcal
Atomic # 8 Polarization: -23.16 SS G_CDS: -0.06 Total: -23.22 kcal
Atomic # 9 Polarization: -4.93 SS G_CDS: 0.72 Total: -4.21 kcal
Atomic # 14 Polarization: 33.84 SS G_CDS: 2.03 Total: 35.87 kcal
Total: -63.71 4.52 -59.19 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243285910.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.742 kcal
(2) G-P(sol) polarization free energy of solvation -63.712 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.969 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.192 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.450 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds