Wall clock time and date at job start Tue Mar 31 2020 11:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00178 * 2 1 4 4 C 1.34776 * 119.99854 * 180.02562 * 2 1 3 5 5 O 1.21563 * 120.00237 * 357.03333 * 4 2 1 6 6 C 1.47731 * 120.00031 * 177.03371 * 4 2 1 7 7 C 1.39317 * 120.08955 * 332.04259 * 6 4 2 8 8 C 1.39399 * 119.72034 * 180.20283 * 7 6 4 9 9 C 1.47755 * 120.04645 * 179.82171 * 8 7 6 10 10 N 1.32875 * 120.25491 * 44.28981 * 9 8 7 11 11 C 1.31997 * 120.07823 * 179.97438 * 10 9 8 12 12 C 1.39202 * 120.59470 * 0.02562 * 11 10 9 13 13 N 1.31609 * 120.50231 * 359.97438 * 12 11 10 14 14 C 1.33968 * 119.90295 * 0.02562 * 13 12 11 15 15 C 1.40785 * 120.28839 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00260 * 189.01508 * 15 14 13 17 17 C 1.40169 * 119.99613 * 9.01936 * 15 14 13 18 18 N 1.30689 * 119.99996 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99793 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47057 * 60.00149 * 19 17 15 21 21 H 1.48498 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47491 * 299.99914 * 19 17 15 23 23 C 1.39907 * 119.90403 * 359.54194 * 8 7 6 24 24 C 1.37832 * 120.18826 * 0.27802 * 23 8 7 25 25 C 1.38531 * 120.27960 * 359.94927 * 24 23 8 26 26 F 1.35103 * 119.95496 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46605 * 299.99291 * 1 2 3 29 29 H 1.08992 * 109.47752 * 59.99526 * 1 2 3 30 30 H 1.08994 * 109.46812 * 276.15953 * 3 2 1 31 31 H 1.08996 * 109.46624 * 36.15452 * 3 2 1 32 32 H 1.08999 * 109.46793 * 156.15459 * 3 2 1 33 33 H 1.08003 * 120.14632 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.70450 * 179.97438 * 11 10 9 35 35 H 1.07991 * 119.74857 * 179.72481 * 12 11 10 36 36 H 0.96999 * 119.99863 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.90907 * 180.25248 * 23 8 7 38 38 H 1.07996 * 119.85767 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5323 -2.2193 0.0535 6 6 3.6147 -1.1681 -0.0667 7 6 4.2865 -0.1185 -0.6895 8 6 5.6791 -0.1292 -0.7513 9 6 6.3988 0.9783 -1.4135 10 7 6.0422 2.2383 -1.1876 11 6 6.6879 3.2250 -1.7807 12 6 7.7453 2.9604 -2.6466 13 7 8.1179 1.7213 -2.8869 14 6 7.4765 0.7044 -2.2958 15 6 7.8686 -0.6242 -2.5466 16 1 7.2630 -1.4430 -2.1872 17 6 9.0452 -0.8843 -3.2627 18 7 9.7778 0.1065 -3.6979 19 14 9.5659 -2.6472 -3.5949 20 1 8.5092 -3.3362 -4.3786 21 1 10.8358 -2.6516 -4.3646 22 1 9.7669 -3.3555 -2.3053 23 6 6.3945 -1.1873 -0.1802 24 6 5.7260 -2.2219 0.4383 25 6 4.3421 -2.2214 0.5000 26 9 3.6936 -3.2386 1.1083 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8898 30 1 2.2837 1.6385 -1.0217 31 1 1.6606 1.9982 0.6063 32 1 3.1932 1.1133 0.4155 33 1 3.7308 0.6988 -1.1251 34 1 6.3927 4.2468 -1.5931 35 1 8.2612 3.7780 -3.1279 36 1 10.5922 -0.0735 -4.1931 37 1 7.4735 -1.1936 -0.2245 38 1 6.2836 -3.0362 0.8769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243285910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:43 Heat of formation + Delta-G solvation = -8.449781 kcal Electronic energy + Delta-G solvation = -25812.662060 eV Core-core repulsion = 21955.686760 eV Total energy + Delta-G solvation = -3856.975300 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.91506 -41.51447 -40.80467 -39.11091 -36.75106 -36.00336 -34.21524 -33.20369 -32.61043 -30.29265 -28.92141 -28.00856 -27.45420 -25.06287 -24.37804 -23.65089 -22.71259 -20.72810 -19.58986 -18.50371 -18.43301 -17.99153 -17.59417 -17.14364 -16.84063 -16.71751 -16.45365 -16.27115 -15.88505 -15.30043 -14.95052 -14.77521 -14.60646 -14.26976 -14.13778 -14.00719 -13.64965 -13.39167 -13.25023 -13.23557 -13.07369 -12.97999 -12.75883 -12.28202 -12.07719 -12.00735 -11.67633 -11.47927 -11.09870 -11.00228 -10.11322 -10.07202 -9.76967 -9.42216 -9.15019 -8.42404 -6.63332 -0.32616 0.03154 0.71562 1.12665 1.41834 1.52392 1.54776 1.65579 1.92338 2.16787 2.60488 2.77075 3.16315 3.30491 3.61987 3.72207 3.81470 4.11617 4.18456 4.20546 4.27754 4.44262 4.45242 4.48789 4.57323 4.68702 4.76780 4.84295 4.87392 4.89503 4.93438 5.05675 5.09416 5.17378 5.26112 5.41251 5.59252 5.78175 5.81759 6.11229 6.12734 6.46965 6.70430 6.94610 7.30369 7.90435 8.25234 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.004930 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.311907 B = 5678.170247 C = 7211.952952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.063 3.937 4 C 0.557 3.443 5 O -0.571 6.571 6 C -0.186 4.186 7 C -0.054 4.054 8 C -0.009 4.009 9 C -0.045 4.045 10 N -0.416 5.416 11 C -0.112 4.112 12 C 0.078 3.922 13 N -0.488 5.488 14 C 0.194 3.806 15 C -0.426 4.426 16 H 0.107 0.893 17 C 0.029 3.971 18 N -0.739 5.739 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.247 1.247 23 C -0.051 4.051 24 C -0.150 4.150 25 C 0.123 3.877 26 F -0.135 7.135 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.287 0.713 37 H 0.146 0.854 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 1.166 4.990 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C -0.079 4.079 4 C 0.346 3.654 5 O -0.452 6.452 6 C -0.189 4.189 7 C -0.074 4.074 8 C -0.010 4.010 9 C -0.191 4.191 10 N -0.128 5.128 11 C -0.273 4.273 12 C -0.092 4.092 13 N -0.205 5.205 14 C 0.070 3.930 15 C -0.456 4.456 16 H 0.125 0.875 17 C -0.196 4.196 18 N -0.359 5.359 19 Si 0.795 3.205 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.170 1.170 23 C -0.070 4.070 24 C -0.169 4.169 25 C 0.102 3.898 26 F -0.114 7.114 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.098 0.902 37 H 0.164 0.836 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.542 0.683 4.904 9.022 hybrid contribution 0.383 -0.420 -0.350 0.668 sum -7.159 0.263 4.554 8.489 Atomic orbital electron populations 1.21887 0.77172 1.03810 1.03570 1.47709 1.08361 1.06039 1.72218 1.22521 0.98139 0.84192 1.03035 1.18296 0.86971 0.84005 0.76099 1.90740 1.70185 1.32193 1.52076 1.19792 0.93264 0.97870 1.08018 1.21895 0.93466 0.96103 0.95890 1.18366 0.92167 0.93728 0.96785 1.20215 1.02396 0.90884 1.05583 1.67736 1.26171 0.99464 1.19466 1.23135 1.00803 0.98531 1.04876 1.24073 0.94418 0.95940 0.94813 1.69492 1.28209 0.98785 1.24057 1.19592 0.89251 0.94402 0.89772 1.20146 1.05620 0.92038 1.27792 0.87489 1.27010 0.95816 1.03345 0.93401 1.70091 1.10024 1.35166 1.20663 0.85330 0.78439 0.76515 0.80259 1.18645 1.19221 1.17014 1.21562 1.01479 0.91535 0.92399 1.21170 0.91019 1.01512 1.03181 1.17905 0.90687 0.85071 0.96092 1.91497 1.82023 1.57406 1.80451 0.91242 0.89644 0.89952 0.91160 0.88168 0.90192 0.82625 0.81703 0.82456 0.90202 0.83621 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 10.71 127.77 1.37 2.91 16 2 N -0.61 -16.18 3.27 -875.50 -2.87 -19.04 16 3 C 0.06 1.37 8.78 127.77 1.12 2.49 16 4 C 0.56 19.26 7.41 86.75 0.64 19.90 16 5 O -0.57 -23.16 15.15 -3.91 -0.06 -23.22 16 6 C -0.19 -6.47 5.45 -20.08 -0.11 -6.58 16 7 C -0.05 -1.89 7.10 22.81 0.16 -1.73 16 8 C -0.01 -0.34 5.27 -20.08 -0.11 -0.45 16 9 C -0.05 -2.03 6.41 42.42 0.27 -1.76 16 10 N -0.42 -17.59 10.30 -182.31 -1.88 -19.47 16 11 C -0.11 -4.40 11.22 84.90 0.95 -3.45 16 12 C 0.08 3.32 11.22 84.96 0.95 4.27 16 13 N -0.49 -24.57 8.10 -187.84 -1.52 -26.09 16 14 C 0.19 9.61 6.51 40.36 0.26 9.87 16 15 C -0.43 -20.12 7.50 23.36 0.18 -19.95 16 16 H 0.11 4.69 5.33 -2.91 -0.02 4.67 16 17 C 0.03 1.32 5.49 85.33 0.47 1.79 16 18 N -0.74 -35.66 11.53 21.86 0.25 -35.41 16 19 Si 0.97 33.84 29.56 68.60 2.03 35.87 16 20 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 21 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 22 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 23 C -0.05 -1.78 7.52 22.58 0.17 -1.61 16 24 C -0.15 -4.67 10.00 22.24 0.22 -4.45 16 25 C 0.12 4.27 7.25 22.76 0.17 4.43 16 26 F -0.14 -4.93 15.91 44.97 0.72 -4.21 16 27 H 0.07 1.66 6.90 -2.39 -0.02 1.65 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.48 7.22 -2.39 -0.02 1.46 16 31 H 0.10 1.56 8.12 -2.39 -0.02 1.54 16 32 H 0.08 2.06 5.05 -2.39 -0.01 2.04 16 33 H 0.16 5.05 4.69 -2.91 -0.01 5.04 16 34 H 0.17 5.19 8.06 -2.91 -0.02 5.17 16 35 H 0.16 5.59 8.06 -2.92 -0.02 5.57 16 36 H 0.29 12.51 8.29 -92.71 -0.77 11.74 16 37 H 0.15 5.20 6.75 -2.91 -0.02 5.18 16 38 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -63.71 325.78 4.52 -59.19 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 1.13 Total: 26.69 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 6.72 Total: 5.69 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -6.01 Total: -100.01 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.06 Total: -23.22 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.72 Total: -4.21 kcal Atomic # 14 Polarization: 33.84 SS G_CDS: 2.03 Total: 35.87 kcal Total: -63.71 4.52 -59.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243285910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.742 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds