Wall clock time and date at job start Tue Mar 31 2020 10:57:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53005 * 109.47298 * 2 1
4 4 O 1.42902 * 109.47166 * 119.99670 * 2 1 3
5 5 C 1.35989 * 117.00020 * 150.00036 * 4 2 1
6 6 C 1.38898 * 120.06407 * 90.00069 * 5 4 2
7 7 F 1.35096 * 120.04553 * 0.02562 * 6 5 4
8 8 C 1.38322 * 119.91698 * 179.97438 * 6 5 4
9 9 C 1.38292 * 120.04661 * 359.97438 * 8 6 5
10 10 C 1.50699 * 119.93134 * 179.97438 * 9 8 6
11 11 N 1.46906 * 109.47140 * 90.00074 * 10 9 8
12 12 C 1.46897 * 110.99771 * 293.95489 * 11 10 9
13 13 C 1.46898 * 110.99890 * 170.00136 * 11 10 9
14 14 C 1.50700 * 109.47068 * 190.00323 * 13 11 10
15 15 H 1.08005 * 120.00161 * 359.97438 * 14 13 11
16 16 C 1.37881 * 120.00285 * 180.02562 * 14 13 11
17 17 N 1.31516 * 120.00008 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 120.00213 * 179.97438 * 16 14 13
19 19 H 1.48503 * 109.47089 * 359.97438 * 18 16 14
20 20 H 1.48503 * 109.47476 * 119.99553 * 18 16 14
21 21 H 1.48498 * 109.47129 * 239.99832 * 18 16 14
22 22 C 1.38216 * 120.13831 * 0.25806 * 9 8 6
23 23 C 1.38324 * 120.07612 * 359.48763 * 22 9 8
24 24 Cl 1.73606 * 120.02457 * 180.25558 * 23 22 9
25 25 H 1.09004 * 109.47058 * 299.99917 * 1 2 3
26 26 H 1.08996 * 109.46985 * 60.00438 * 1 2 3
27 27 H 1.09001 * 109.46855 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47266 * 239.99629 * 2 1 3
29 29 H 1.08998 * 109.46966 * 180.02562 * 3 2 1
30 30 H 1.09006 * 109.46747 * 299.99644 * 3 2 1
31 31 H 1.08999 * 109.47265 * 59.99628 * 3 2 1
32 32 H 1.07997 * 119.97863 * 180.02562 * 8 6 5
33 33 H 1.09004 * 109.47103 * 330.00175 * 10 9 8
34 34 H 1.09000 * 109.47247 * 210.00053 * 10 9 8
35 35 H 1.08997 * 109.47293 * 60.00221 * 12 11 10
36 36 H 1.09000 * 109.46769 * 179.97438 * 12 11 10
37 37 H 1.08999 * 109.47106 * 299.99134 * 12 11 10
38 38 H 1.09004 * 109.47244 * 310.00126 * 13 11 10
39 39 H 1.08994 * 109.47665 * 70.00225 * 13 11 10
40 40 H 0.96995 * 120.00203 * 180.02562 * 17 16 14
41 41 H 1.07995 * 119.96603 * 179.74262 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 8 2.0063 -0.6736 1.1668
5 6 3.2015 -1.3144 1.0651
6 6 4.3797 -0.6405 1.3600
7 9 4.3401 0.6527 1.7490
8 6 5.5936 -1.2954 1.2561
9 6 5.6342 -2.6196 0.8595
10 6 6.9582 -3.3305 0.7465
11 7 7.2870 -3.9606 2.0322
12 6 7.5214 -2.9478 3.0701
13 6 8.4441 -4.8557 1.8991
14 6 8.6009 -5.6650 3.1607
15 1 7.9102 -5.5278 3.9796
16 6 9.6266 -6.5799 3.2699
17 7 10.4680 -6.7466 2.2729
18 14 9.8213 -7.5825 4.8339
19 1 8.7548 -7.2089 5.7974
20 1 9.7138 -9.0282 4.5118
21 1 11.1505 -7.3071 5.4361
22 6 4.4634 -3.2908 0.5609
23 6 3.2461 -2.6427 0.6681
24 17 1.7760 -3.4891 0.2990
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5137 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 1.8934 -0.5139 -0.8899
29 1 3.1300 1.4425 -0.0005
30 1 1.6767 1.9563 -0.8901
31 1 1.6767 1.9564 0.8899
32 1 6.5102 -0.7725 1.4855
33 1 7.7351 -2.6121 0.4848
34 1 6.8951 -4.0954 -0.0274
35 1 6.6236 -2.3429 3.1969
36 1 7.7623 -3.4415 4.0116
37 1 8.3519 -2.3078 2.7722
38 1 8.2893 -5.5265 1.0540
39 1 9.3441 -4.2638 1.7330
40 1 11.1893 -7.3905 2.3496
41 1 4.4987 -4.3237 0.2474
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001250281578.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:57:47
Heat of formation + Delta-G solvation = -67.181857 kcal
Electronic energy + Delta-G solvation = -24026.457360 eV
Core-core repulsion = 20268.042740 eV
Total energy + Delta-G solvation = -3758.414620 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.114 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-49.01663 -40.13494 -38.42660 -36.78405 -36.03516 -33.45146 -32.57580 -30.63469
-30.42847 -27.53731 -27.19728 -26.59183 -24.04841 -23.09697 -22.16884 -21.30693
-20.31951 -18.40886 -17.16586 -17.08971 -16.31990 -16.24798 -15.25626 -15.01707
-14.93350 -14.80037 -14.57233 -14.41568 -13.95848 -13.69118 -13.42759 -13.16098
-12.83401 -12.61010 -12.52323 -12.25848 -12.01969 -11.96675 -11.60106 -11.43138
-11.40366 -11.15468 -11.07016 -10.96081 -10.91393 -10.64724 -10.49752 -10.17161
-9.93063 -9.27745 -8.82379 -8.65916 -8.47535 -7.37581 -6.07462 -4.08763
0.76706 0.91358 1.91715 3.03375 3.29027 3.36785 3.41641 3.45801
4.06718 4.39672 4.59094 4.61822 4.67633 4.87571 4.89170 4.98157
5.05956 5.11839 5.29216 5.29893 5.36961 5.50053 5.55457 5.63839
5.69231 5.80428 5.86284 5.90675 5.95875 5.99072 6.10063 6.22333
6.40601 6.48839 6.69409 7.17866 7.23100 7.24452 7.72977 7.97966
8.09124 8.45004 8.98985 9.55830 11.03446
Molecular weight = 315.11amu
Principal moments of inertia in cm(-1)
A = 0.023149 B = 0.002996 C = 0.002814
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1209.288406 B = 9343.165891 C = 9946.809870
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.084 3.916
3 C -0.178 4.178
4 O -0.313 6.313
5 C 0.062 3.938
6 C 0.093 3.907
7 F -0.127 7.127
8 C -0.134 4.134
9 C -0.023 4.023
10 C 0.087 3.913
11 N -0.534 5.534
12 C 0.032 3.968
13 C 0.192 3.808
14 C -0.507 4.507
15 H 0.065 0.935
16 C 0.055 3.945
17 N -0.899 5.899
18 Si 0.898 3.102
19 H -0.272 1.272
20 H -0.284 1.284
21 H -0.285 1.285
22 C -0.088 4.088
23 C -0.029 4.029
24 Cl -0.050 7.050
25 H 0.066 0.934
26 H 0.073 0.927
27 H 0.065 0.935
28 H 0.064 0.936
29 H 0.061 0.939
30 H 0.067 0.933
31 H 0.066 0.934
32 H 0.143 0.857
33 H 0.040 0.960
34 H 0.086 0.914
35 H 0.047 0.953
36 H 0.077 0.923
37 H 0.013 0.987
38 H 0.032 0.968
39 H -0.007 1.007
40 H 0.261 0.739
41 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.668 14.065 -7.421 23.037
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.029 3.971
3 C -0.235 4.235
4 O -0.230 6.230
5 C 0.016 3.984
6 C 0.073 3.927
7 F -0.106 7.106
8 C -0.153 4.153
9 C -0.024 4.024
10 C -0.041 4.041
11 N -0.258 5.258
12 C -0.117 4.117
13 C 0.068 3.932
14 C -0.546 4.546
15 H 0.083 0.917
16 C -0.146 4.146
17 N -0.538 5.538
18 Si 0.726 3.274
19 H -0.196 1.196
20 H -0.210 1.210
21 H -0.211 1.211
22 C -0.107 4.107
23 C -0.056 4.056
24 Cl -0.021 7.021
25 H 0.085 0.915
26 H 0.091 0.909
27 H 0.084 0.916
28 H 0.082 0.918
29 H 0.080 0.920
30 H 0.086 0.914
31 H 0.085 0.915
32 H 0.161 0.839
33 H 0.059 0.941
34 H 0.104 0.896
35 H 0.066 0.934
36 H 0.096 0.904
37 H 0.031 0.969
38 H 0.050 0.950
39 H 0.011 0.989
40 H 0.071 0.929
41 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -17.158 13.657 -7.193 23.079
hybrid contribution 0.927 0.073 0.490 1.051
sum -16.232 13.730 -6.703 22.291
Atomic orbital electron populations
1.21854 0.92781 1.03122 1.02710 1.22432 0.95259 0.92351 0.87057
1.22389 1.02248 0.96169 1.02722 1.86182 1.32338 1.68407 1.36118
1.18194 0.85358 0.90196 1.04694 1.17743 0.93169 0.79420 1.02415
1.91492 1.97171 1.33562 1.88367 1.21165 0.96687 0.95440 1.02021
1.19831 0.96094 0.92071 0.94435 1.21104 0.90744 0.97238 0.95010
1.62186 1.42496 1.17967 1.03146 1.22323 0.97843 0.94097 0.97397
1.19782 0.84739 0.90396 0.98304 1.21180 1.12123 1.20511 1.00765
0.91715 1.24984 0.95726 0.97156 0.96730 1.69959 1.16767 1.35809
1.31292 0.86439 0.77889 0.79918 0.83186 1.19607 1.20966 1.21116
1.21011 0.89065 1.00935 0.99722 1.21060 0.88877 0.92189 1.03503
1.98369 1.34414 1.76613 1.92741 0.91540 0.90855 0.91621 0.91793
0.91954 0.91389 0.91467 0.83895 0.94147 0.89590 0.93429 0.90420
0.96865 0.94992 0.98887 0.92927 0.83451
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.17 9.56 37.16 0.36 -0.81 16
2 C 0.08 0.84 3.40 -26.73 -0.09 0.75 16
3 C -0.18 -1.60 9.22 37.16 0.34 -1.25 16
4 O -0.31 -4.06 9.03 -19.71 -0.18 -4.23 16
5 C 0.06 0.83 5.56 -39.16 -0.22 0.61 16
6 C 0.09 1.25 7.10 -39.31 -0.28 0.97 16
7 F -0.13 -1.72 15.33 2.25 0.03 -1.68 16
8 C -0.13 -1.77 7.94 -39.53 -0.31 -2.09 16
9 C -0.02 -0.33 4.88 -104.61 -0.51 -0.84 16
10 C 0.09 1.41 5.12 -4.97 -0.03 1.39 16
11 N -0.53 -10.87 4.74 -245.83 -1.17 -12.03 16
12 C 0.03 0.60 8.95 60.06 0.54 1.14 16
13 C 0.19 4.79 4.72 -4.98 -0.02 4.76 16
14 C -0.51 -13.87 8.46 -34.44 -0.29 -14.16 16
15 H 0.06 1.77 7.12 -52.48 -0.37 1.40 16
16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16
17 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16
18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16
19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16
20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
22 C -0.09 -1.19 9.48 -39.56 -0.37 -1.57 16
23 C -0.03 -0.38 6.33 -39.37 -0.25 -0.63 16
24 Cl -0.05 -0.61 28.50 -51.86 -1.48 -2.09 16
25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
28 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16
29 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16
30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.14 1.73 8.03 -52.49 -0.42 1.31 16
33 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16
34 H 0.09 1.35 7.87 -51.93 -0.41 0.94 16
35 H 0.05 0.79 6.16 -51.93 -0.32 0.47 16
36 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16
37 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16
38 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16
39 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16
40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
41 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16
LS Contribution 357.52 15.07 5.39 5.39
Total: -1.00 -29.21 357.52 -8.89 -38.10
By element:
Atomic # 1 Polarization: 1.89 SS G_CDS: -5.97 Total: -4.08 kcal
Atomic # 6 Polarization: -9.06 SS G_CDS: -1.24 Total: -10.30 kcal
Atomic # 7 Polarization: -36.99 SS G_CDS: -0.43 Total: -37.42 kcal
Atomic # 8 Polarization: -4.06 SS G_CDS: -0.18 Total: -4.23 kcal
Atomic # 9 Polarization: -1.72 SS G_CDS: 0.03 Total: -1.68 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal
Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -29.21 -8.89 -38.10 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001250281578.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.080 kcal
(2) G-P(sol) polarization free energy of solvation -29.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.294 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds