Wall clock time and date at job start Tue Mar 31 2020 10:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47298 * 2 1 4 4 O 1.42902 * 109.47166 * 119.99670 * 2 1 3 5 5 C 1.35989 * 117.00020 * 150.00036 * 4 2 1 6 6 C 1.38898 * 120.06407 * 90.00069 * 5 4 2 7 7 F 1.35096 * 120.04553 * 0.02562 * 6 5 4 8 8 C 1.38322 * 119.91698 * 179.97438 * 6 5 4 9 9 C 1.38292 * 120.04661 * 359.97438 * 8 6 5 10 10 C 1.50699 * 119.93134 * 179.97438 * 9 8 6 11 11 N 1.46906 * 109.47140 * 90.00074 * 10 9 8 12 12 C 1.46897 * 110.99771 * 293.95489 * 11 10 9 13 13 C 1.46898 * 110.99890 * 170.00136 * 11 10 9 14 14 C 1.50700 * 109.47068 * 190.00323 * 13 11 10 15 15 H 1.08005 * 120.00161 * 359.97438 * 14 13 11 16 16 C 1.37881 * 120.00285 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00213 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47089 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47476 * 119.99553 * 18 16 14 21 21 H 1.48498 * 109.47129 * 239.99832 * 18 16 14 22 22 C 1.38216 * 120.13831 * 0.25806 * 9 8 6 23 23 C 1.38324 * 120.07612 * 359.48763 * 22 9 8 24 24 Cl 1.73606 * 120.02457 * 180.25558 * 23 22 9 25 25 H 1.09004 * 109.47058 * 299.99917 * 1 2 3 26 26 H 1.08996 * 109.46985 * 60.00438 * 1 2 3 27 27 H 1.09001 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47266 * 239.99629 * 2 1 3 29 29 H 1.08998 * 109.46966 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46747 * 299.99644 * 3 2 1 31 31 H 1.08999 * 109.47265 * 59.99628 * 3 2 1 32 32 H 1.07997 * 119.97863 * 180.02562 * 8 6 5 33 33 H 1.09004 * 109.47103 * 330.00175 * 10 9 8 34 34 H 1.09000 * 109.47247 * 210.00053 * 10 9 8 35 35 H 1.08997 * 109.47293 * 60.00221 * 12 11 10 36 36 H 1.09000 * 109.46769 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.47106 * 299.99134 * 12 11 10 38 38 H 1.09004 * 109.47244 * 310.00126 * 13 11 10 39 39 H 1.08994 * 109.47665 * 70.00225 * 13 11 10 40 40 H 0.96995 * 120.00203 * 180.02562 * 17 16 14 41 41 H 1.07995 * 119.96603 * 179.74262 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2015 -1.3144 1.0651 6 6 4.3797 -0.6405 1.3600 7 9 4.3401 0.6527 1.7490 8 6 5.5936 -1.2954 1.2561 9 6 5.6342 -2.6196 0.8595 10 6 6.9582 -3.3305 0.7465 11 7 7.2870 -3.9606 2.0322 12 6 7.5214 -2.9478 3.0701 13 6 8.4441 -4.8557 1.8991 14 6 8.6009 -5.6650 3.1607 15 1 7.9102 -5.5278 3.9796 16 6 9.6266 -6.5799 3.2699 17 7 10.4680 -6.7466 2.2729 18 14 9.8213 -7.5825 4.8339 19 1 8.7548 -7.2089 5.7974 20 1 9.7138 -9.0282 4.5118 21 1 11.1505 -7.3071 5.4361 22 6 4.4634 -3.2908 0.5609 23 6 3.2461 -2.6427 0.6681 24 17 1.7760 -3.4891 0.2990 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 6.5102 -0.7725 1.4855 33 1 7.7351 -2.6121 0.4848 34 1 6.8951 -4.0954 -0.0274 35 1 6.6236 -2.3429 3.1969 36 1 7.7623 -3.4415 4.0116 37 1 8.3519 -2.3078 2.7722 38 1 8.2893 -5.5265 1.0540 39 1 9.3441 -4.2638 1.7330 40 1 11.1893 -7.3905 2.3496 41 1 4.4987 -4.3237 0.2474 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250281578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:47 Heat of formation + Delta-G solvation = -67.181857 kcal Electronic energy + Delta-G solvation = -24026.457360 eV Core-core repulsion = 20268.042740 eV Total energy + Delta-G solvation = -3758.414620 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.01663 -40.13494 -38.42660 -36.78405 -36.03516 -33.45146 -32.57580 -30.63469 -30.42847 -27.53731 -27.19728 -26.59183 -24.04841 -23.09697 -22.16884 -21.30693 -20.31951 -18.40886 -17.16586 -17.08971 -16.31990 -16.24798 -15.25626 -15.01707 -14.93350 -14.80037 -14.57233 -14.41568 -13.95848 -13.69118 -13.42759 -13.16098 -12.83401 -12.61010 -12.52323 -12.25848 -12.01969 -11.96675 -11.60106 -11.43138 -11.40366 -11.15468 -11.07016 -10.96081 -10.91393 -10.64724 -10.49752 -10.17161 -9.93063 -9.27745 -8.82379 -8.65916 -8.47535 -7.37581 -6.07462 -4.08763 0.76706 0.91358 1.91715 3.03375 3.29027 3.36785 3.41641 3.45801 4.06718 4.39672 4.59094 4.61822 4.67633 4.87571 4.89170 4.98157 5.05956 5.11839 5.29216 5.29893 5.36961 5.50053 5.55457 5.63839 5.69231 5.80428 5.86284 5.90675 5.95875 5.99072 6.10063 6.22333 6.40601 6.48839 6.69409 7.17866 7.23100 7.24452 7.72977 7.97966 8.09124 8.45004 8.98985 9.55830 11.03446 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.002996 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.288406 B = 9343.165891 C = 9946.809870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.084 3.916 3 C -0.178 4.178 4 O -0.313 6.313 5 C 0.062 3.938 6 C 0.093 3.907 7 F -0.127 7.127 8 C -0.134 4.134 9 C -0.023 4.023 10 C 0.087 3.913 11 N -0.534 5.534 12 C 0.032 3.968 13 C 0.192 3.808 14 C -0.507 4.507 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.088 4.088 23 C -0.029 4.029 24 Cl -0.050 7.050 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.143 0.857 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.013 0.987 38 H 0.032 0.968 39 H -0.007 1.007 40 H 0.261 0.739 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.668 14.065 -7.421 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 C -0.235 4.235 4 O -0.230 6.230 5 C 0.016 3.984 6 C 0.073 3.927 7 F -0.106 7.106 8 C -0.153 4.153 9 C -0.024 4.024 10 C -0.041 4.041 11 N -0.258 5.258 12 C -0.117 4.117 13 C 0.068 3.932 14 C -0.546 4.546 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.107 4.107 23 C -0.056 4.056 24 Cl -0.021 7.021 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.011 0.989 40 H 0.071 0.929 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.158 13.657 -7.193 23.079 hybrid contribution 0.927 0.073 0.490 1.051 sum -16.232 13.730 -6.703 22.291 Atomic orbital electron populations 1.21854 0.92781 1.03122 1.02710 1.22432 0.95259 0.92351 0.87057 1.22389 1.02248 0.96169 1.02722 1.86182 1.32338 1.68407 1.36118 1.18194 0.85358 0.90196 1.04694 1.17743 0.93169 0.79420 1.02415 1.91492 1.97171 1.33562 1.88367 1.21165 0.96687 0.95440 1.02021 1.19831 0.96094 0.92071 0.94435 1.21104 0.90744 0.97238 0.95010 1.62186 1.42496 1.17967 1.03146 1.22323 0.97843 0.94097 0.97397 1.19782 0.84739 0.90396 0.98304 1.21180 1.12123 1.20511 1.00765 0.91715 1.24984 0.95726 0.97156 0.96730 1.69959 1.16767 1.35809 1.31292 0.86439 0.77889 0.79918 0.83186 1.19607 1.20966 1.21116 1.21011 0.89065 1.00935 0.99722 1.21060 0.88877 0.92189 1.03503 1.98369 1.34414 1.76613 1.92741 0.91540 0.90855 0.91621 0.91793 0.91954 0.91389 0.91467 0.83895 0.94147 0.89590 0.93429 0.90420 0.96865 0.94992 0.98887 0.92927 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.56 37.16 0.36 -0.81 16 2 C 0.08 0.84 3.40 -26.73 -0.09 0.75 16 3 C -0.18 -1.60 9.22 37.16 0.34 -1.25 16 4 O -0.31 -4.06 9.03 -19.71 -0.18 -4.23 16 5 C 0.06 0.83 5.56 -39.16 -0.22 0.61 16 6 C 0.09 1.25 7.10 -39.31 -0.28 0.97 16 7 F -0.13 -1.72 15.33 2.25 0.03 -1.68 16 8 C -0.13 -1.77 7.94 -39.53 -0.31 -2.09 16 9 C -0.02 -0.33 4.88 -104.61 -0.51 -0.84 16 10 C 0.09 1.41 5.12 -4.97 -0.03 1.39 16 11 N -0.53 -10.87 4.74 -245.83 -1.17 -12.03 16 12 C 0.03 0.60 8.95 60.06 0.54 1.14 16 13 C 0.19 4.79 4.72 -4.98 -0.02 4.76 16 14 C -0.51 -13.87 8.46 -34.44 -0.29 -14.16 16 15 H 0.06 1.77 7.12 -52.48 -0.37 1.40 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.09 -1.19 9.48 -39.56 -0.37 -1.57 16 23 C -0.03 -0.38 6.33 -39.37 -0.25 -0.63 16 24 Cl -0.05 -0.61 28.50 -51.86 -1.48 -2.09 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 29 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.14 1.73 8.03 -52.49 -0.42 1.31 16 33 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 34 H 0.09 1.35 7.87 -51.93 -0.41 0.94 16 35 H 0.05 0.79 6.16 -51.93 -0.32 0.47 16 36 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 37 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 39 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -29.21 357.52 -8.89 -38.10 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.97 Total: -4.08 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.24 Total: -10.30 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.43 Total: -37.42 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.18 Total: -4.23 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.03 Total: -1.68 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.21 -8.89 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250281578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.080 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds